View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11434_low_9 (Length: 395)
Name: NF11434_low_9
Description: NF11434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11434_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 381
Target Start/End: Complemental strand, 41977608 - 41977245
Alignment:
| Q |
18 |
aaaactttcacttaactttagattttcaaagcaatagagaaatattgatgatggatatattttttctgctatgctgaaacttgaaaatttctaagcaatt |
117 |
Q |
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| T |
41977608 |
aaaactttcacttaactttagattttcaaagcaatagagaaatattgatgatggatatattttttctgctatgctgaaacttgaaaatttctaagcaatt |
41977509 |
T |
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| Q |
118 |
tatagggtgaaataaacaaataagtatagaacaaggaacataattcatgataacgtataaatcaagttcaaaataaaacacgcatagataaattgaacgg |
217 |
Q |
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| T |
41977508 |
tatagggtgaaataaacaaataagtatataacaaggaacataattcatgataacgtataaatcaagttcaaaataaaacacgcatagataaattgatcgg |
41977409 |
T |
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| Q |
218 |
aaaggaagacggttacagatttttcagggttatcatgatcaacgcgcactcaattagttgttcgtaagacagaatatttgcataaagataaaaacgactc |
317 |
Q |
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| T |
41977408 |
aaaggaagacggttacagatttttcagggttatcatgataaacgcgcactcaattagttgttcgtaagacagaatatttgcataaagataaaaacgactc |
41977309 |
T |
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| Q |
318 |
gcattttgcgtaactgtttaaacttagattcacgcaattaaaaatatgattcctttgaattcat |
381 |
Q |
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| T |
41977308 |
gtattttgcgtaactgtttaaacttagattcacgcaattaaaaatatgattcctttgaattcat |
41977245 |
T |
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