View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11435_high_10 (Length: 316)
Name: NF11435_high_10
Description: NF11435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11435_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 2 - 289
Target Start/End: Original strand, 50396239 - 50396526
Alignment:
| Q |
2 |
tatcagttacctgctggaagtaaaggttacgaatttcttcagcacgcacaggatttccctcatcttcctccagtgatgcccatgtcatccatgtcacata |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
50396239 |
tatcagttacctgctggaagtaaaggttacgaatttcttcagcacgcacaggatttccttgatcttcctccagtgatgcccatgtcatccatgtcacata |
50396338 |
T |
|
| Q |
102 |
actctgagaatttatattcaacgaggatctacacaatcttcgagcagccaaaagattcccaaccctctgctccagaacaccccatgcctgcattatatga |
201 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50396339 |
actctgagaatttatattcaacgaggatctaaacaatcttcgagcagccaaaagattcccaaccctctgctccagaacaccccatgcctgcattatatga |
50396438 |
T |
|
| Q |
202 |
aaagtagtttcgagaaattgaatatcaagctaggtaaaggctcaagtcaagttgtcgcaacatttatcatatgcatgcatgtcacctg |
289 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50396439 |
aaagtaatttcgaaaaattgaatatcaagctaggtaaaggctcaagtcaagttgtcgcaacatttatcatatgcatgcatgtcacctg |
50396526 |
T |
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