View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11435_high_4 (Length: 370)

Name: NF11435_high_4
Description: NF11435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11435_high_4
NF11435_high_4
[»] chr3 (3 HSPs)
chr3 (224-312)||(13362647-13362735)
chr3 (216-312)||(13292465-13292561)
chr3 (222-278)||(10878728-10878784)
[»] chr4 (5 HSPs)
chr4 (216-312)||(11449872-11449968)
chr4 (299-343)||(8686585-8686629)
chr4 (19-53)||(19556113-19556147)
chr4 (263-312)||(11544765-11544814)
chr4 (217-301)||(21810779-21810863)
[»] scaffold0711 (1 HSPs)
scaffold0711 (216-306)||(2690-2780)
[»] chr8 (1 HSPs)
chr8 (233-302)||(24277972-24278041)
[»] chr2 (1 HSPs)
chr2 (222-307)||(27766444-27766529)
[»] chr5 (2 HSPs)
chr5 (216-309)||(24886579-24886672)
chr5 (19-47)||(24495224-24495252)
[»] chr6 (1 HSPs)
chr6 (21-53)||(19490296-19490328)
[»] chr7 (3 HSPs)
chr7 (216-307)||(11609802-11609892)
chr7 (222-280)||(20052498-20052556)
chr7 (18-50)||(19843196-19843228)
[»] chr1 (1 HSPs)
chr1 (17-53)||(22637631-22637667)


Alignment Details
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 224 - 312
Target Start/End: Complemental strand, 13362735 - 13362647
Alignment:
Q  224 ctcaccttgagtttgtatcagagcatggtatgtgctctaccacttaaccgtgccacaattaaagatccagagagaaaaacatgtctact 312  Q
    |||||||| |||| |||||| || | ||| ||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||    
T  13362735 ctcaccttcagttggtatcaaagtacggtttgtgctcaaccacttaaccgtgccacaattaaagattcatagagaaaaacatgtctact 13362647  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 216 - 312
Target Start/End: Original strand, 13292465 - 13292561
Alignment:
Q  216 gtgttattctcaccttgagtttgtatcagagcatggtatgtgctctaccacttaaccgtgccacaattaaagatccagagagaaaaacatgtctact 312  Q
    ||||| ||||||||||  ||| |||||| || | ||| ||||||| ||||||||||||||||||| |||||||| || |||||||||||||||||||    
T  13292465 gtgtttttctcaccttcggttggtatcaaagtacggtttgtgctcaaccacttaaccgtgccacagttaaagattcatagagaaaaacatgtctact 13292561  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 10878728 - 10878784
Alignment:
Q  222 ttctcaccttgagtttgtatcagagcatggtatgtgctctaccacttaaccgtgcca 278  Q
    |||||||||| |||| ||||||||||| ||| ||||  || ||||||||||||||||    
T  10878728 ttctcaccttcagttggtatcagagcacggtctgtgtgctgccacttaaccgtgcca 10878784  T

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Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 216 - 312
Target Start/End: Original strand, 11449872 - 11449968
Alignment:
Q  216 gtgttattctcaccttgagtttgtatcagagcatggtatgtgctctaccacttaaccgtgccacaattaaagatccagagagaaaaacatgtctact 312  Q
    |||||||| ||||||| | || |||||||||||| || || ||||  ||||||||  |||||||||||||||||||| |||||||||||||||||||    
T  11449872 gtgttattgtcacctttacttggtatcagagcatagtctgcgctcagccacttaattgtgccacaattaaagatccaaagagaaaaacatgtctact 11449968  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 299 - 343
Target Start/End: Original strand, 8686585 - 8686629
Alignment:
Q  299 aaaacatgtctactcctgagagggatacttcagcctctaaaacat 343  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  8686585 aaaacatgtctactcctgagaaggatacttcagcctctaaaacat 8686629  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 19556113 - 19556147
Alignment:
Q  19 tgtgttgtgggaggaaccagtataaattgtttgtg 53  Q
    |||||||||||||||||||||||||||||||||||    
T  19556113 tgtgttgtgggaggaaccagtataaattgtttgtg 19556147  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 11544814 - 11544765
Alignment:
Q  263 ccacttaaccgtgccacaattaaagatccagagagaaaaacatgtctact 312  Q
    |||||||| ||||||||||| ||||||||| |||||||||||||| ||||    
T  11544814 ccacttaatcgtgccacaatcaaagatccaaagagaaaaacatgtatact 11544765  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 301
Target Start/End: Original strand, 21810779 - 21810863
Alignment:
Q  217 tgttattctcaccttgagtttgtatcagagcatggtatgtgctctaccacttaaccgtgccacaattaaagatccagagagaaaa 301  Q
    |||| |||||||||| |||| ||||  ||||| ||| |||| || || |||||||| ||||| ||||||||||| ||||||||||    
T  21810779 tgtttttctcaccttcagttggtatttgagcacggtttgtgatcaactacttaaccatgccataattaaagatctagagagaaaa 21810863  T

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Target: scaffold0711 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 306
Target Start/End: Original strand, 2690 - 2780
Alignment:
Q  216 gtgttattctcaccttgagtttgtatcagagcatggtatgtgctctaccacttaaccgtgccacaattaaagatccagagagaaaaacatg 306  Q
    ||||| |||||||||| |||| ||||||||| | ||||| |||||| ||||||||| || |||||  ||||||||||| ||||||||||||    
T  2690 gtgtttttctcaccttcagttggtatcagagtacggtatatgctctgccacttaactgtaccacagataaagatccagtgagaaaaacatg 2780  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 233 - 302
Target Start/End: Original strand, 24277972 - 24278041
Alignment:
Q  233 agtttgtatcagagcatggtatgtgctctaccacttaaccgtgccacaattaaagatccagagagaaaaa 302  Q
    |||| |||| ||||||||||||||||||  |||||||||| | |||||||||||||| ||||||||||||    
T  24277972 agttagtattagagcatggtatgtgctcatccacttaaccctaccacaattaaagattcagagagaaaaa 24278041  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 307
Target Start/End: Original strand, 27766444 - 27766529
Alignment:
Q  222 ttctcaccttgagtttgtatcagagcatggtatgtgctctaccacttaaccgtgccacaattaaagatccagagagaaaaacatgt 307  Q
    ||||| |||| |||| ||||||||||| ||| ||||||| | || ||||||||| |||| ||||||||| ||||||||||||||||    
T  27766444 ttctccccttcagttggtatcagagcaaggtttgtgctcaatcaattaaccgtgtcacagttaaagatctagagagaaaaacatgt 27766529  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 309
Target Start/End: Original strand, 24886579 - 24886672
Alignment:
Q  216 gtgttattctcaccttgagtttgtatcagagcatggtatgtgctctaccacttaaccgtgccacaattaaagatccagagagaaaaacatgtct 309  Q
    ||||| |||||||||| |||| ||||||| |||||||| |||||||  ||||||||||||||  |   |||||||||  |||||||||||||||    
T  24886579 gtgtttttctcacctttagttggtatcagtgcatggtacgtgctctgtcacttaaccgtgccttagaaaaagatccaaggagaaaaacatgtct 24886672  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 24495224 - 24495252
Alignment:
Q  19 tgtgttgtgggaggaaccagtataaattg 47  Q
    |||||||||||||||||||||||||||||    
T  24495224 tgtgttgtgggaggaaccagtataaattg 24495252  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 19490328 - 19490296
Alignment:
Q  21 tgttgtgggaggaaccagtataaattgtttgtg 53  Q
    |||||||||||||||||||||||||||||||||    
T  19490328 tgttgtgggaggaaccagtataaattgtttgtg 19490296  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 307
Target Start/End: Original strand, 11609802 - 11609892
Alignment:
Q  216 gtgttattctcaccttgagtttgtatcagagcatggtatgtgctctaccacttaaccgtgccacaattaaagatccagagagaaaaacatgt 307  Q
    ||||| |||||||||| | || |||||||||||||||||||||||  ||||||||  ||| |||||  ||| ||||| ||| ||||||||||    
T  11609802 gtgtttttctcaccttcatttggtatcagagcatggtatgtgctcagccacttaattgtgtcacaa-aaaaaatccaaagaaaaaaacatgt 11609892  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 280
Target Start/End: Complemental strand, 20052556 - 20052498
Alignment:
Q  222 ttctcaccttgagtttgtatcagagcatggtatgtgctctaccacttaaccgtgccaca 280  Q
    |||||||||| ||||||||| ||||| || ||||||||||  ||| |||||||||||||    
T  20052556 ttctcacctttagtttgtattagagcctgttatgtgctctgtcacctaaccgtgccaca 20052498  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 19843196 - 19843228
Alignment:
Q  18 ctgtgttgtgggaggaaccagtataaattgttt 50  Q
    ||||||||||| |||||||||||||||||||||    
T  19843196 ctgtgttgtggaaggaaccagtataaattgttt 19843228  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 22637667 - 22637631
Alignment:
Q  17 cctgtgttgtgggaggaaccagtataaattgtttgtg 53  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  22637667 cctgtgttgtgggagaaactagtataaattgtttgtg 22637631  T

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