View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11435_high_5 (Length: 369)
Name: NF11435_high_5
Description: NF11435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11435_high_5 |
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| [»] chr5 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 92 - 369
Target Start/End: Complemental strand, 3002011 - 3001733
Alignment:
| Q |
92 |
gataactctgtaaaaacaagtcaat-gtcataaagtttggacaagaaactgcagcaattaccgtttatgcaacctttaaatagtattactatcccattta |
190 |
Q |
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| T |
3002011 |
gataactatgtaaaaacaagtcaaaagtcataaagtttggacaagaaactgcagcaattaccatttatgcaacctttaaatagtattactatcccattta |
3001912 |
T |
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| Q |
191 |
gtacaatatatcattagatatcaatcattatattgtacagcagcagatgtcaaagcacattatattcatattcataaccaacgcatgctagtaaaatatt |
290 |
Q |
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| T |
3001911 |
gtataatatatcattacata-caatcattatattgtgcagcagcagatgccaaagcacattatattcatattcataaccaacacatgctagtaaaatatt |
3001813 |
T |
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| Q |
291 |
tccgtagcggc-acaatttagacattgcacaaaaaactgcagtagcttacgtattgagaatcttaaaaacagcacttcat |
369 |
Q |
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| T |
3001812 |
tccgtagtggcaacaatttagacattgcacaaaaaactgcagtagcttacgtattgagcatcttgaaagcagcacttcat |
3001733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 16895126 - 16895055
Alignment:
| Q |
7 |
tacttttccttttggggaagagaaaacattttagaccc--aatgtgtatactgcatgattcaactgggttta |
76 |
Q |
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| T |
16895126 |
tacttttccctttggggaagagaaaacattttagacccataatatgtatactgcatgattcaattgggttta |
16895055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 208 - 369
Target Start/End: Complemental strand, 32707096 - 32706935
Alignment:
| Q |
208 |
atatcaatcattatattgtacagcagcagatgtcaaagcacattatattcatattcataaccaacgcatgctagtaaaatatttccgtagcggcacaatt |
307 |
Q |
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| T |
32707096 |
atatcaatcattatattgtgcagcagcagatgtaaaagcacattatattcatattcataaccaacgcatgctagtaaaatatttccgtagcggcacaatt |
32706997 |
T |
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| Q |
308 |
tagacattgcacaaaaaactgcagtagcttacgtattgagaatcttaaaaacagcacttcat |
369 |
Q |
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| T |
32706996 |
tagacattgcacaaaaaactgcagtagcttacgtattgagaatcttaaaaacagcacttcat |
32706935 |
T |
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