View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11435_high_6 (Length: 353)
Name: NF11435_high_6
Description: NF11435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11435_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 15 - 322
Target Start/End: Original strand, 40893971 - 40894279
Alignment:
| Q |
15 |
catcatcatttttaaattgaatttcatattggaggatttctggttgtttgtttcagggagcttggactattttaggagttgtttgtctgtttcnnnnnnn |
114 |
Q |
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| T |
40893971 |
catcttcatttttaaattgaatttcatattggaggatttctggttgtttgtttcagggagcttgaactatttcaggagttgtttgtctgtttcttttttt |
40894070 |
T |
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| Q |
115 |
nctctctcgccatttcagcttcaaatttgcgtttgatttttcatttagggagtgagtgagatcatttgtagtggatgtatgtgtagcttcttgtggtgtg |
214 |
Q |
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| T |
40894071 |
tttctctcgccatttcagcttcaaatttgcgtttgatttttcatttaggaagtgagtgagatcatttgtagtggatgtatgtgtagcttcttgtggtgtg |
40894170 |
T |
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| Q |
215 |
tctcagaattatgtggtttctgtacatatggagctac-aaaaccatgaatgttgtaatgtttgtggtgtgttaaagttggaattgttttacaattaggac |
313 |
Q |
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| T |
40894171 |
tctcagaattatgtggtttgtgtacatatggagctacaaaaatcatgaatgttgtaatgtttgtggtgtgttaaagttggaattgttttacaattaggac |
40894270 |
T |
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| Q |
314 |
ccaaaagtt |
322 |
Q |
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||||||||| |
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| T |
40894271 |
ccaaaagtt |
40894279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 31621364 - 31621396
Alignment:
| Q |
125 |
catttcagcttcaaatttgcgtttgatttttca |
157 |
Q |
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| T |
31621364 |
catttcagcttcaaatttgcgtttgctttttca |
31621396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 157
Target Start/End: Complemental strand, 36574766 - 36574734
Alignment:
| Q |
125 |
catttcagcttcaaatttgcgtttgatttttca |
157 |
Q |
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| T |
36574766 |
catttcagcttcaaatttgcgtttgctttttca |
36574734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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