View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11435_high_7 (Length: 349)
Name: NF11435_high_7
Description: NF11435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11435_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 4761648 - 4761328
Alignment:
| Q |
1 |
aatgtttcttgtacctcaatttaattttaataggactgaaaagaaccattgtgttatgaatgatgttgtcttgtcttgtggtaacgatttcaattgcgtg |
100 |
Q |
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| T |
4761648 |
aatgtttcttgtacctcaatttaattttaataggactgaaaagaaccattgtgttatgaatgatgttgtcttgtcttgtggtaacgatttcaattgcgtg |
4761549 |
T |
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| Q |
101 |
tatgaatatgtccttttcatagaacaattgggtataaacgcaaccttaattataatgtaattattaattattatggtttaccaacaaaccccgcctattg |
200 |
Q |
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| T |
4761548 |
tatgaat--gtccttttcattgaacaattgggtataaacgcaaccttaattataatgtaattattaattattatggtttaccaataaaccctgcctattg |
4761451 |
T |
|
| Q |
201 |
atattttctgttacgtaaatggtgagattaacatattgtaacaaacattaacaaaaattgttaacaaatctatgcatggtaagatataataagaaaaatg |
300 |
Q |
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| T |
4761450 |
atattttctgttacgtaaatggtgagattaacatattgtaacaaacattaacaaaaattgttaacaaatctatgcatggtaagatataataagaaaaatg |
4761351 |
T |
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| Q |
301 |
gttctggttccacttagtcatga |
323 |
Q |
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| T |
4761350 |
attctggttccacttagtcatga |
4761328 |
T |
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