View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11436_high_12 (Length: 516)
Name: NF11436_high_12
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11436_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 418; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 14 - 504
Target Start/End: Complemental strand, 18948884 - 18948392
Alignment:
| Q |
14 |
agacagtagtttgaatgctacatatgatgaaactaaggtatttgtaacatctgcgacacatttctgtgagctatgcaacatcaacacttcagattgatgc |
113 |
Q |
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| T |
18948884 |
agacagtagtttgaatgctaaatatgatgaaactaaggtatttgtaacatctgcaacacatttctgtgagctatgcaacatcaacacttcagatcgatgc |
18948785 |
T |
|
| Q |
114 |
catgtccggtatgcatcagtgtctgaaaccagcacgacactatcacatttacattcaattattaatattttccaaaactattgcgtgtatctcgtgttag |
213 |
Q |
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||||||||||||||||||||||||||||||| || |||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
18948784 |
catgtccggtatgcatcagtgtctgaaaccaacatgacattatcacatttacgttcaattattaatattttctaaaactattgcgtgtatctcgtgttag |
18948685 |
T |
|
| Q |
214 |
tatatgtgttgtgtcaattatcaatatctatgttagtgcttaactgcttcgtagtccaca--agtaggacactatatattttcgaaaaatcaatagaaga |
311 |
Q |
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| T |
18948684 |
tatatgtgctgtgtcaattatcaatatctatattagtgcttaactgcttcgtagtccacaagagtaggacactatatattttagaaaaatcaatagaaga |
18948585 |
T |
|
| Q |
312 |
cacaattactataattttaggtgcataaaacacacatttcttaaacttgcaacgaaattcgactttatacttcaaaaatcttaataactaagtttcttca |
411 |
Q |
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| T |
18948584 |
cgcaattactataaatttagttgcataaaacacacatttcttaaacttgcaacgaaattcgactttatacttcaaaaatcttaataactaagtttcttca |
18948485 |
T |
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| Q |
412 |
tttctgtttataaatagtcatgaaccctactgcacttccacccttttccttctcacatggaactaatgatataatgtattgctctttctgatg |
504 |
Q |
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| T |
18948484 |
tttctgtttataaatagtcatcaaccctactccacttccacccttttccttctcacatggaactaatgatataatgtattgctctttctgatg |
18948392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 14 - 225
Target Start/End: Original strand, 19005075 - 19005285
Alignment:
| Q |
14 |
agacagtagtttgaatgctacatatgatgaaactaaggtatttgtaacatctgcgacacatttctgtgagctatgcaacatcaacacttcagattgatgc |
113 |
Q |
| |
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|||||||| |||||| |||| | ||||||||| ||||||||||||||| | | |||||| || |||||||||||||| ||||||| ||||||| |||| |
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| T |
19005075 |
agacagtaatttgaaagctaaagatgatgaaaa-aaggtatttgtaacagccgtgacacacttatgtgagctatgcaatatcaacaattcagatcgatgg |
19005173 |
T |
|
| Q |
114 |
catgtccggtatgcatcagtgtctgaaaccagcacgacactatcacatttacattcaattattaatattttccaaaactattgcgtgtatctcgtgttag |
213 |
Q |
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| T |
19005174 |
catgtccggcatgtatgactgtctgaaatcaacacgacaccatcacatttacactcaattactattattttctaaaattatccctagtgtctcttgttag |
19005273 |
T |
|
| Q |
214 |
tatatgtgttgt |
225 |
Q |
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|||||||||||| |
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| T |
19005274 |
tatatgtgttgt |
19005285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 48 - 195
Target Start/End: Original strand, 18992362 - 18992504
Alignment:
| Q |
48 |
aaggtatttgtaacatctgcgacacatttctgtgagctatgcaacatcaacacttcagattgatgccatgtccggtatgcatcagtgtctgaaaccagca |
147 |
Q |
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||||||||||||||| ||| |||||| ||||||||||||||||| ||||||| ||||||| |||| ||||||||| ||| || |||||||||||||| || |
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| T |
18992362 |
aaggtatttgtaacagctgtgacacacttctgtgagctatgcaatatcaacaattcagatcgatggcatgtccggcatgtattagtgtctgaaaccaaca |
18992461 |
T |
|
| Q |
148 |
cgacactatcacatttacattcaattattaatattttccaaaactatt |
195 |
Q |
| |
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||||| | ||||||||||||||| || ||||||| |||| |||| |
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| T |
18992462 |
cgacatt-----atttacattcaattactattattttctaaaattatt |
18992504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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