View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11436_high_15 (Length: 483)
Name: NF11436_high_15
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11436_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 19 - 465
Target Start/End: Complemental strand, 7555211 - 7554767
Alignment:
| Q |
19 |
cacagaagaatgaattcacatatttattctatgaagcaccgatgcttgcatcatatcaaatacattcctcgtatctaatgccgatactttggatgcttcc |
118 |
Q |
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| T |
7555211 |
cacagaagaatgaattcacat--ttattctatgaagcaccgatgcttgaatcatatcaaatacattcctcgtatctaatgccgatactttggatgcttcc |
7555114 |
T |
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| Q |
119 |
ctgatacttaatataggtatccaattcagcttttaacnnnnnnngttgcccagtcctgatgttgttgaacagtttcaagatacaacaaaatggtttcaat |
218 |
Q |
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|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7555113 |
ctgatacttattataggtatccaattcagcttttaacaaaaaaagttgcccagtcctgatgttgttgaacagtttcaagatacaacaaaatggtttcaat |
7555014 |
T |
|
| Q |
219 |
gtgccttgcctaggacctttaaattacccaaaagatctaaacacgctactcttttaaatcatttggcatgagagtcacaagttaaactcacaaatcatca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7555013 |
gtgccttgcctaggacctttaaattacccaaaagatctaaacacgctactcttttaaatcatttggcatgagagtcacaagttaaactcacaaatcatca |
7554914 |
T |
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| Q |
319 |
tcttttatactctactcaagtgtcaatgtgaacacaacattttcatttcaatcgatcacatttatcatctttaggttgtttacatattcatggctttaaa |
418 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7554913 |
tcttttgtactctactcaagtgtcaatgtgaacacaacattttcatttcaatcaatcacatttatcatctttaggttgtttacatattcatggctttaaa |
7554814 |
T |
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| Q |
419 |
gtttgctgcatattttcctaaccaaaatcacatactagctaatatgt |
465 |
Q |
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| T |
7554813 |
gtttgctgcatattttcctaaccaaaatcacatactagctaatatgt |
7554767 |
T |
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