View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11436_high_18 (Length: 472)
Name: NF11436_high_18
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11436_high_18 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 19 - 459
Target Start/End: Complemental strand, 439257 - 438817
Alignment:
| Q |
19 |
gttaagcactgcaatatttatattcatttccatctttgtggtgcatcctgtcattgtaaaggtcattgatcgcaagacagaaagagatgaatggaatgct |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
439257 |
gttaagcactgcaatatttatattcatttccatctttgtggtgcatcctatcattgtaaaggtcattgatcgcaagacagaaagagatgaatgggatgct |
439158 |
T |
|
| Q |
119 |
aaccaactagtgtttgtctttatgggccttatggttttctcgttcatagccgatactcttggcacacatgatgttgttggggcttttttatacgggttga |
218 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
439157 |
aaccaactagtttttgtctttatgggccttatggttttctcattcatagccgatactcttggcacacatgatgttgttggggcttttttatacgggttga |
439058 |
T |
|
| Q |
219 |
ttttacctcacggtaaatttgctgacatggtcgtgtcgatgactaatgattttggtattgggtttcttgcaccgatctacttttgtggcaatggatcaaa |
318 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
439057 |
ttttacctcacggtaaatttgctgacatggtcgtgtcaatgactaatgattttggtattggctttcttgcaccgatctacttttgtggcaatggatcaaa |
438958 |
T |
|
| Q |
319 |
actcatggtgaaaaccattttctttcagccaaattgtgcctatacacttatcattatactcttgttgtgtgttccaaagattttaagcactttgtttgcc |
418 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
438957 |
actcatggtgaaaaccattttctttcagccaaattgtgcctatacacttatcattatactcttgttgtgtgttccaaagattttaagcactttgtttgcc |
438858 |
T |
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| Q |
419 |
actttcttctttggcatgcgtgctcaagatgggtttgctct |
459 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |
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| T |
438857 |
actttcttctttggcatgcgtgctcaagatggttttgctct |
438817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 19 - 457
Target Start/End: Original strand, 28607646 - 28608084
Alignment:
| Q |
19 |
gttaagcactgcaatatttatattcatttccatctttgtggtgcatcctgtcattgtaaaggtcattgatcgcaagacagaaagagatgaatggaatgct |
118 |
Q |
| |
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||||||||||| ||||||| | ||||||| ||||||||||||||||||| | || | ||| |||||| |||||||||||||||||||||||||| ||| | |
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| T |
28607646 |
gttaagcactgtaatatttgttttcatttgcatctttgtggtgcatcctataatcgcaaaagtcattaatcgcaagacagaaagagatgaatgggatggt |
28607745 |
T |
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| Q |
119 |
aaccaactagtgtttgtctttatgggccttatggttttctcgttcatagccgatactcttggcacacatgatgttgttggggcttttttatacgggttga |
218 |
Q |
| |
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|||||| |||| ||||| | ||||| ||| | |||||||| | |||| | |||| |||||| |||||||| |||||||| || ||| |||||||||||| |
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| T |
28607746 |
aaccaattagtctttgtggtgatgggactttttgttttctcatacataactgatattcttggtacacatgacgttgttggtgcatttgtatacgggttga |
28607845 |
T |
|
| Q |
219 |
ttttacctcacggtaaatttgctgacatggtcgtgtcgatgactaatgattttggtattgggtttcttgcaccgatctacttttgtggcaatggatcaaa |
318 |
Q |
| |
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|||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||| ||||| || |||||| ||||| ||||| || |
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| T |
28607846 |
ttttacctcacggtaaatttgctgacatggtcacatcaatgactaatgattttggtggtgggtttctagcaccaatttactttattggcagtggattgaa |
28607945 |
T |
|
| Q |
319 |
actcatggtgaaaaccattttctttcagccaaattgtgcctatacacttatcattatactcttgttgtgtgttccaaagattttaagcactttgtttgcc |
418 |
Q |
| |
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||||||| | || |||||| ||| |||| ||| ||| |||||||||||||||||||||| ||||||||| ||||||| |||||||||||||| || |
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| T |
28607946 |
actcatgttcgtgcccgttttctatcaaccaagttggccctttacacttatcattatactcttgatgtgtgttctaaagattctaagcactttgttttcc |
28608045 |
T |
|
| Q |
419 |
actttcttctttggcatgcgtgctcaagatgggtttgct |
457 |
Q |
| |
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|||||||| |||||||||||| ||| |||||| |||||| |
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| T |
28608046 |
actttcttgtttggcatgcgtactcgagatggttttgct |
28608084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 32 - 124
Target Start/End: Complemental strand, 7589922 - 7589830
Alignment:
| Q |
32 |
atatttatattcatttccatctttgtggtgcatcctgtcattgtaaaggtcattgatcgcaagacagaaagagatgaatggaatgctaaccaa |
124 |
Q |
| |
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|||||||| || |||| |||||||||||| || | ||||||| |||| |||||||||||||||| |||||||| ||||||||| ||||||| |
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| T |
7589922 |
atatttattttaatttgcatctttgtggtatattgtatcattgtcaaggccattgatcgcaagacaaaaagagattaatggaatgataaccaa |
7589830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 433
Target Start/End: Complemental strand, 7589594 - 7589522
Alignment:
| Q |
361 |
tacacttatcattatactcttgttgtgtgttccaaagattttaagcactttgtttgccactttcttctttggc |
433 |
Q |
| |
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|||| |||| |||||| |||| ||| ||||| ||||||| ||| |||||||||||||| |||||| |||||| |
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| T |
7589594 |
tacatttattattatagtcttattgcatgttcaaaagattctaaacactttgtttgccagtttcttttttggc |
7589522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 41 - 447
Target Start/End: Original strand, 13651557 - 13651963
Alignment:
| Q |
41 |
ttcatttccatctttgtggtgcatcctgtcattgtaaaggtcattgatcgcaagacagaaagagatgaatggaatgctaaccaactagtgtttgtcttta |
140 |
Q |
| |
|
||||||| ||| |||||||||| |||| |||| ||||||||||||||||||||| ||||||||||||||| ||| ||| ||| || | ||| | | | |
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| T |
13651557 |
ttcatttgcatttttgtggtgcgtcctatcatcgtaaaggtcattgatcgcaagcttgaaagagatgaatgggatgataaacaattactctttcttctga |
13651656 |
T |
|
| Q |
141 |
tgggccttatggttttctcgttcatagccgatactcttggcacacatgatgttgttggggcttttttatacgggttgattttacctcacggtaaatttgc |
240 |
Q |
| |
|
|||| | | |||| ||| | ||| | | || |||||||||||| ||| |||| || |||||| | |||||||||||||| ||||| ||||||||||| |
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| T |
13651657 |
tggggatgtttgtttgctcatatataacaggtattcttggcacacaagatattgtcggagcttttgtgtacgggttgattttgcctcatggtaaatttgc |
13651756 |
T |
|
| Q |
241 |
tgacatggtcgtgtcgatgactaatgattttggtattgggtttcttgcaccgatctacttttgtggcaatggatcaaaactcatggtgaaaaccattttc |
340 |
Q |
| |
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||| |||||| ||| |||||| |||| |||||| | |||||| || ||| ||| |||| || |||||||| |||| |||||| |||| ||| |
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| T |
13651757 |
tgatatggtcacgtcaatgactgatgactttggtggcgagtttctggccccgctcttctttagtcgcaatggaatgcgcttcattgtgaaagccatattc |
13651856 |
T |
|
| Q |
341 |
tttcagccaaattgtgcctatacacttatcattatactcttgttgtgtgttccaaagattttaagcactttgtttgccactttcttctttggcatgcgtg |
440 |
Q |
| |
|
| || | ||| || ||| |||||| | ||||| ||||||| |||||||||||||||||||||||||||||| ||||||| || |||||||||||| |
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| T |
13651857 |
gtccatcgaaactggcccttaacacttgtgcttataatcttgttatgtgttccaaagattttaagcactttgtttaccactttattttttggcatgcgta |
13651956 |
T |
|
| Q |
441 |
ctcaaga |
447 |
Q |
| |
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||||||| |
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| T |
13651957 |
ctcaaga |
13651963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 447
Target Start/End: Original strand, 13659021 - 13659449
Alignment:
| Q |
19 |
gttaagcactgcaatatttatattcatttccatctttgtggtgcatcctgtcattgtaaaggtcattgatcgcaagacagaaagagatgaatggaatgct |
118 |
Q |
| |
|
||||||||| | |||||| | ||||||| ||| ||| |||||| ||| ||||||||||| |||||||||||||||| ||||||||||||||||| | | |
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|
| T |
13659021 |
gttaagcaccgtcatatttgttttcatttgcatttttctggtgcgtccgatcattgtaaagttcattgatcgcaagactgaaagagatgaatggaacgat |
13659120 |
T |
|
| Q |
119 |
aaccaactagtgtttgtctttatgggccttatggttttctcgttcatagccgatactcttggcacacatgatgttgttggggcttttttatacgggttga |
218 |
Q |
| |
|
|| || || | ||| | | ||||| || | |||| ||| | |||| | |||| |||||| ||||| || |||||||||||||| | |||||||||| |
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|
| T |
13659121 |
aaagaattactctttcttgtgatggggatttttgtttgctcatgcataacagatattcttggaacacaagacattgttggggcttttgtgtacgggttga |
13659220 |
T |
|
| Q |
219 |
ttttacctcacggtaaatttgctgacatggtcgtgtcgatgactaatgattttggtattgggtttcttgcaccgatctacttttgtggcaatggatcaaa |
318 |
Q |
| |
|
||||||||||||||||||||||||| || ||| | ||||| |||||||| | |||||||| |||||| ||| |||| || | || ||| |
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|
| T |
13659221 |
ttttacctcacggtaaatttgctgatatcgtcactacactgactgatgatttttgcggcgggtttctagcaccgctcttctttagtcgtaacggaatgcg |
13659320 |
T |
|
| Q |
319 |
actcatggtgaaaaccattttctttcagccaaattgtgcctatacacttatcattatactcttgttgtgtgttccaaagattttaagcactttgtttgcc |
418 |
Q |
| |
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| || | ||||| |||| || | | |||| ||| ||| |||||| | |||||| ||||||| |||||||| ||||||||||||||||||||||| |
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| T |
13659321 |
attctttgtgaattccatatttatctatccaacttggcccttaacacttgttattataatcttgttatgtgttccgaagattttaagcactttgtttgct |
13659420 |
T |
|
| Q |
419 |
actttcttctttggcatgcgtgctcaaga |
447 |
Q |
| |
|
|||||||| ||||| |||||| ||||||| |
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|
| T |
13659421 |
actttcttttttggtatgcgtactcaaga |
13659449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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