View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11436_high_19 (Length: 469)
Name: NF11436_high_19
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11436_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Original strand, 48823598 - 48824054
Alignment:
| Q |
1 |
cctatctaccttcatctgatcccaaacacaaagagagattggttacccacgagtgaggtaacaagtagagagaagaagaataacgaaggaggaacatcaa |
100 |
Q |
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||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48823598 |
cctatctaccttcatctaatcccaaacaca--gagagattggttacccacgagtgaggtaacaagtagagagaagaagaataacgaaggaggaacatcaa |
48823695 |
T |
|
| Q |
101 |
aaagcttgaatccaagctctaataaactccaacagtgatacacaacttctcacactctatgcctctctatccctctaaaatgagacttagctatcaaaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
48823696 |
aaagcttgaatccaagctctaataaactccaacagtgatacacaacttctcacactctatgcctccctatccctctaaaatgagacttagctatcaaaaa |
48823795 |
T |
|
| Q |
201 |
tatatctaaaattctaattacaatcttatttatataagtacaaaaagtgcaggtttgctcttgaggttttttcaagtgggggaaaaagcatagctgatct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48823796 |
tatatctaaaattctaattacaatcttatttatataagtacaaaaagtgcaggttcgctcttgaggttttttcaagtgggggaaaaagcatagctgatct |
48823895 |
T |
|
| Q |
301 |
ccaaaagttattaaaccgccttactttgcggaacgaagtgttgcttgctcaacgagtgtgttgtagcctttctccctataactctttggaattgctcgcc |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48823896 |
ccaaaagttattaaaccgccttactttgcggaacgaagtgttgcttgctcaacgagtgtgttgtagcctttctccctataactctttggaattgctcgcc |
48823995 |
T |
|
| Q |
401 |
tagcaaaggtcctcgcccataaatccttaaaactctctctatcttgactcgtcttcatctc |
461 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
48823996 |
tagcaaaggtcctcgcccataaatccttaaaa--ctctctatcttgactcgtcttcatctc |
48824054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 9253070 - 9252834
Alignment:
| Q |
1 |
cctatctaccttcatctgatcccaaacacaaagagagattggttacccacgagtgaggtaacaagtagagagaagaagaataacgaaggaggaacatcaa |
100 |
Q |
| |
|
|||| |||||| ||||| |||||||||| |||||||| |||| ||| || ||||||||| || | | |||| ||||| | |||||||||||||||| |
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| T |
9253070 |
cctagctacctacatctaatcccaaacat---gagagattagttagccatgattgaggtaactagcaaatagaattagaatgatgaaggaggaacatcaa |
9252974 |
T |
|
| Q |
101 |
aaagcttgaatccaagctctaataaactccaacagtgatacacaacttctcacactctatgcctctctatccctctaaaatgagacttagctatcaaaag |
200 |
Q |
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||||||||||| ||||| |||| ||||| |||| |||||||||||||||||| ||| | |||||||| ||||||||| |||||||| |
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| T |
9252973 |
caagcttgaatctaagcttcaatagcttccaatggtga-acacaacttctcacactc----cctat------ctctaaaacgagacttaggtatcaaaaa |
9252885 |
T |
|
| Q |
201 |
tatatctaaaattctaattacaatcttatttatataagtacaaaaagtgca |
251 |
Q |
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||||| | ||| ||| || |||||| |||||||| |||||||||| ||||| |
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| T |
9252884 |
tatattttaaaatctgatcacaatcctatttatacaagtacaaaatgtgca |
9252834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 9499383 - 9499428
Alignment:
| Q |
74 |
agaagaataacgaaggaggaacatcaaaaagcttgaatccaagctc |
119 |
Q |
| |
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|||||||| | || ||||||||||||| |||||||||||||||||| |
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|
| T |
9499383 |
agaagaatgatgatggaggaacatcaacaagcttgaatccaagctc |
9499428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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