View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11436_high_21 (Length: 453)
Name: NF11436_high_21
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11436_high_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 15 - 444
Target Start/End: Complemental strand, 55201230 - 55200812
Alignment:
| Q |
15 |
tcataggaaccgacaatgaatcccaaaaaactcactatctgcacattagtagtagagtgtttctttatctatcctcacacttgcttcagagtatgaaatc |
114 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
55201230 |
tcataagaaccgataatgaatcccaaaaaactcactatctgcacattagcagtagagtgtttctttatctatcctcacacttatttcggagtatgaaatt |
55201131 |
T |
|
| Q |
115 |
cgaaaagttaaaaggtgttggacaatattttaaacgtgtttg-acgcttttctgattatataatctgaaattcgtatggaatgcaagaaaccattacact |
213 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
55201130 |
cgaaaaattaaaaggtgttggacaatattttaaacgtgtttgtacgcttttctgattatataatctgaaattcgtatggaatgcaagaagccattacact |
55201031 |
T |
|
| Q |
214 |
tttcagttaactaccgttaacaggaacatgcaaagtttaattaactatcattaaagacattttccataatttaaggtgcctatgaagtatgaacaaatat |
313 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
55201030 |
tttcagttaactac-----------acatgcaaagtttaattaactatcattaaagacattttccataatttaaggtgcctatgaagtatgatcaaatat |
55200942 |
T |
|
| Q |
314 |
taggtgctaaagagcaattttctagcagtaatgcgttcggcttagtgaaaacctcataaaaacaacccatgacccgagtccgataattcaaaagctctaa |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55200941 |
taggtgctaaagagcaattttctagcagtaacgcgttcggcttagtgaaaacctcat-aaaacaacccatgacccgagtccgataattcaaaagctctaa |
55200843 |
T |
|
| Q |
414 |
ccctcgtcttcttctcttgttttctctctgc |
444 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
55200842 |
ccctcgtcttcttctcttgttttctctctgc |
55200812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University