View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11436_high_22 (Length: 450)
Name: NF11436_high_22
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11436_high_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Complemental strand, 23408764 - 23408333
Alignment:
| Q |
1 |
tggtatctcaagcaaagccatgggaataatgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaag |
100 |
Q |
| |
|
|||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23408764 |
tggtatctcaagcaaagcgatgggtatcatgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaag |
23408665 |
T |
|
| Q |
101 |
aagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23408664 |
aagccaacaatcacttcaagggaaattcagaccgcggtcagacttgttcttcctggagaattggccaagcatgctgtttctgaaggcaccaaggctgtga |
23408565 |
T |
|
| Q |
201 |
ctaagtttacaagctcttagacatttcgtttatgtttattggtttcttagtgttttaattttctgagttgtaatgaactaatgggatctgttgatgtctt |
300 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23408564 |
ctaagtttactagctcttagacatttcgattatgtttattggtttcttagtgttttaattttctgagttgtaatgaactaatgggatctgttgatgtctt |
23408465 |
T |
|
| Q |
301 |
ttgtgtaagaaatggagttaatgatatttgacttgaaaattgcttgtagaattgggtttctctctgttttgaatgattgatctaggggtatcaaagactg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
23408464 |
ttgtgtaagaaatggagttaatgatatttgacatgaaaattgcttgtagaattgggtttctctctgttttgaatgattgatctaggggtatcaaagacgg |
23408365 |
T |
|
| Q |
401 |
aatacattttctcataaaatatagttggattc |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
23408364 |
aatacattttctcataaaatatagttggattc |
23408333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 23415933 - 23415712
Alignment:
| Q |
1 |
tggtatctcaagcaaagccatgggaataatgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaag |
100 |
Q |
| |
|
||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23415933 |
tggtatctcaagcaaggccatgggtatcatgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaag |
23415834 |
T |
|
| Q |
101 |
aagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
23415833 |
aagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtga |
23415734 |
T |
|
| Q |
201 |
ctaagtttacaagctcttagac |
222 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
23415733 |
ctaagtttactagctcttagac |
23415712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 23453596 - 23453376
Alignment:
| Q |
1 |
tggtatctcaagcaaagccatgggaataatgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaag |
100 |
Q |
| |
|
||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23453596 |
tggtatctcaagcaaggccatgggtatcatgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaag |
23453497 |
T |
|
| Q |
101 |
aagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23453496 |
aagccaacaatcacttcaagggaaattcagactgcagtcagtcttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtga |
23453397 |
T |
|
| Q |
201 |
ctaagtttacaagctcttaga |
221 |
Q |
| |
|
| |||||||| || ||||||| |
|
|
| T |
23453396 |
ccaagtttactagttcttaga |
23453376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 23868786 - 23869006
Alignment:
| Q |
1 |
tggtatctcaagcaaagccatgggaataatgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23868786 |
tggtatctcaagcaaagccatgggaataatgaacagtttcatcaatgatatcttcgagaaacttgctcaagaatcatccagacttgctcgttacaacaag |
23868885 |
T |
|
| Q |
101 |
aagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| || || ||||||| |
|
|
| T |
23868886 |
aagccaacaatcacttcaagggaaattcagactgctgtcagacttgttcttcctggtgaattggccaaacatgctgtttctgaaggaacaaaagctgtga |
23868985 |
T |
|
| Q |
201 |
ctaagtttacaagctcttaga |
221 |
Q |
| |
|
||||||| || || ||||||| |
|
|
| T |
23868986 |
ctaagttcactagttcttaga |
23869006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 24307277 - 24307497
Alignment:
| Q |
1 |
tggtatctcaagcaaagccatgggaataatgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
24307277 |
tggtatctcaagcaaagccatgggaataatgaacagtttcatcaatgatatcttcgagaaactagctcaagaatcatccagacttgctcgttacaacaag |
24307376 |
T |
|
| Q |
101 |
aagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||| |
|
|
| T |
24307377 |
aagccaacaatcacttcaagggaaattcagactgctgtcagacttgttcttcctggtgaattggccaagcatgctgtttctgagggtaccaaagctgtga |
24307476 |
T |
|
| Q |
201 |
ctaagtttacaagctcttaga |
221 |
Q |
| |
|
| ||||| || || ||||||| |
|
|
| T |
24307477 |
ccaagttcactagttcttaga |
24307497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 23885881 - 23886101
Alignment:
| Q |
1 |
tggtatctcaagcaaagccatgggaataatgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaag |
100 |
Q |
| |
|
||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23885881 |
tggtatctcaagcaaggccatgggtatcatgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaag |
23885980 |
T |
|
| Q |
101 |
aagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||| |
|
|
| T |
23885981 |
aagccaacaatcacttcaagggaaattcagactgcagtcaggcttgttcttcctggtgaattggccaagcatgctgtctctgagggaaccaaagctgtga |
23886080 |
T |
|
| Q |
201 |
ctaagtttacaagctcttaga |
221 |
Q |
| |
|
| |||||||| || ||||||| |
|
|
| T |
23886081 |
ccaagtttactagttcttaga |
23886101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 23402128 - 23402348
Alignment:
| Q |
1 |
tggtatctcaagcaaagccatgggaataatgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaag |
100 |
Q |
| |
|
||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23402128 |
tggtatctcaagcaaggccatgggtatcatgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaag |
23402227 |
T |
|
| Q |
101 |
aagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || || || ||||| ||||||| |
|
|
| T |
23402228 |
aagccaacaatcacttcaagggaaattcagactgcagtcaggcttgttcttcctggtgaattggccaagcatgctgtctcagagggaaccaaagctgtga |
23402327 |
T |
|
| Q |
201 |
ctaagtttacaagctcttaga |
221 |
Q |
| |
|
| |||||||| || ||||||| |
|
|
| T |
23402328 |
ccaagtttactagttcttaga |
23402348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 26434078 - 26434298
Alignment:
| Q |
1 |
tggtatctcaagcaaagccatgggaataatgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaag |
100 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26434078 |
tggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatgatatcttcgagaaactcgctcaagaatcatccagacttgctcgttacaacaag |
26434177 |
T |
|
| Q |
101 |
aagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||| |||||||| || ||||||||||||||||||||||||||||| || ||||||||||| | |
|
|
| T |
26434178 |
aagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtca |
26434277 |
T |
|
| Q |
201 |
ctaagtttacaagctcttaga |
221 |
Q |
| |
|
|||||||||| || ||||||| |
|
|
| T |
26434278 |
ctaagtttactagttcttaga |
26434298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 26832789 - 26833009
Alignment:
| Q |
1 |
tggtatctcaagcaaagccatgggaataatgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaag |
100 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26832789 |
tggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatgatatcttcgagaaactcgctcaagaatcatccagacttgctcgttacaacaag |
26832888 |
T |
|
| Q |
101 |
aagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||| |||||||| || ||||||||||||||||||||||||||||| || ||||||||||| | |
|
|
| T |
26832889 |
aagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtca |
26832988 |
T |
|
| Q |
201 |
ctaagtttacaagctcttaga |
221 |
Q |
| |
|
|||||||||| || ||||||| |
|
|
| T |
26832989 |
ctaagtttactagttcttaga |
26833009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 26435858 - 26436078
Alignment:
| Q |
1 |
tggtatctcaagcaaagccatgggaataatgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaag |
100 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||| |
|
|
| T |
26435858 |
tggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatgatatcttcgagaaactcactcaagaatcttccagacttgctcgttacaacaag |
26435957 |
T |
|
| Q |
101 |
aagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||| |||||||| || ||||||||||||||||||| ||||||||| || ||||||||||| | |
|
|
| T |
26435958 |
aagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgttctgcccggtgaattggccaagcatgatgtttctgagggtaccaaggctgtca |
26436057 |
T |
|
| Q |
201 |
ctaagtttacaagctcttaga |
221 |
Q |
| |
|
|||||||||| || ||||||| |
|
|
| T |
26436058 |
ctaagtttaccagttcttaga |
26436078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 34662265 - 34662045
Alignment:
| Q |
1 |
tggtatctcaagcaaagccatgggaataatgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaag |
100 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| | || |||||| |
|
|
| T |
34662265 |
tggtatctcaagcaaagccatgggtattatgaacagtttcatcaatgatatcttcgagaagctcgctcaagaatcttccagacttgcaaggtataacaag |
34662166 |
T |
|
| Q |
101 |
aagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtga |
200 |
Q |
| |
|
||||| || || ||||| ||||||||||||||||| || || |||||||||||||| |||||||| ||||||||||| ||||| || ||||| ||||| | |
|
|
| T |
34662165 |
aagccgacgataacttcgagggaaattcagactgctgttaggcttgttcttcctggagaattggctaagcatgctgtgtctgagggtaccaaagctgtaa |
34662066 |
T |
|
| Q |
201 |
ctaagtttacaagctcttaga |
221 |
Q |
| |
|
| ||||||||||| ||||||| |
|
|
| T |
34662065 |
cgaagtttacaagttcttaga |
34662045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 37 - 169
Target Start/End: Complemental strand, 23451920 - 23451788
Alignment:
| Q |
37 |
tttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgca |
136 |
Q |
| |
|
||||||||| |||||||| |||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
23451920 |
tttcatcaacgatatctttgagaagctcgctcaagaatactccagacttgctcgctacaacaagaagccaacaatcacttcaagggaaattcagaccgca |
23451821 |
T |
|
| Q |
137 |
gtcagacttgttcttcctggtgaattggccaag |
169 |
Q |
| |
|
||||| |||||||| || ||||||||||||||| |
|
|
| T |
23451820 |
gtcaggcttgttctgcccggtgaattggccaag |
23451788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 4e-39; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 96 - 210
Target Start/End: Original strand, 33216594 - 33216708
Alignment:
| Q |
96 |
acaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggc |
195 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||| ||||||||||||||| |||||||||||||| || |||||||| |
|
|
| T |
33216594 |
acaagaagccaacaatcacttcaaggaaaattcaaactgctgtcagacttgttcttcttggtgaattggccaaacatgctgtttctgagggtaccaaggc |
33216693 |
T |
|
| Q |
196 |
tgtgactaagtttac |
210 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
33216694 |
tgtgaccaagtttac |
33216708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 41670454 - 41670651
Alignment:
| Q |
1 |
tggtatctcaagcaaagccatgggaataatgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaag |
100 |
Q |
| |
|
||||||||||||||| || ||||| || |||||||| ||||||||||||||||| |||||||| ||||| ||||| ||||||||||| | ||||||||| |
|
|
| T |
41670454 |
tggtatctcaagcaaggctatggggatcatgaacagcttcatcaatgatatctttgagaagctcgctcaggaatcttccagacttgcgaggtacaacaag |
41670553 |
T |
|
| Q |
101 |
aagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgt |
198 |
Q |
| |
|
||||| ||||||||||| |||| || |||||||| || | |||||||| || |||||| | || ||||||||||| ||||| || ||||||||||| |
|
|
| T |
41670554 |
aagcctacaatcacttctcgggagatacagactgctgttcgtcttgttctccccggtgaacttgctaagcatgctgtctctgagggaaccaaggctgt |
41670651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 5 - 218
Target Start/End: Original strand, 40795827 - 40796040
Alignment:
| Q |
5 |
atctcaagcaaagccatgggaataatgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagc |
104 |
Q |
| |
|
||||| ||||| || ||||| || |||||||||||||||||||| ||||| |||||||| ||||| |||||||||||||| ||||| ||||||||||| | |
|
|
| T |
40795827 |
atctccagcaaggctatggggatcatgaacagtttcatcaatgacatctttgagaagctcgctcaggaatcatccagactcgctcgctacaacaagaaac |
40795926 |
T |
|
| Q |
105 |
caacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaa |
204 |
Q |
| |
|
| || ||||| || | || ||||||||||| || | || |||||||| || ||| | |||||||| ||||| || || || ||||| || || ||||| |
|
|
| T |
40795927 |
ctaccatcacctctcgtgagattcagactgctgttcgtctcgttcttcccggcgaacttgccaagcacgctgtctccgagggaaccaaagcagtcactaa |
40796026 |
T |
|
| Q |
205 |
gtttacaagctctt |
218 |
Q |
| |
|
||||||||||||| |
|
|
| T |
40796027 |
atttacaagctctt |
40796040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 29391532 - 29391717
Alignment:
| Q |
13 |
caaagccatgggaataatgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatc |
112 |
Q |
| |
|
|||||| ||||| || |||||||||||||||||||||||||| ||||| || ||||| ||| | || ||| | ||||||||||||||||| || || || |
|
|
| T |
29391532 |
caaagctatggggattatgaacagtttcatcaatgatatctttgagaaactcgctcaggaagcttctagattggctcgttacaacaagaaaccgacgatt |
29391631 |
T |
|
| Q |
113 |
acttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgt |
198 |
Q |
| |
|
|| || ||||| ||||| || || || | | |||||||| ||||||||||| || ||||||||||| ||||| ||||||||||| |
|
|
| T |
29391632 |
acgtcgagggagattcaaacggctgtgcgtttggttcttcccggtgaattggcgaaacatgctgtttccgaaggaaccaaggctgt |
29391717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 45576399 - 45576477
Alignment:
| Q |
143 |
cttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga |
221 |
Q |
| |
|
|||||||| || | ||||||||| ||||||| ||||||||| || ||||| |||||||| || || ||||||||||||| |
|
|
| T |
45576399 |
cttgttctgcccgatgaattggctaagcatgttgtttctgagggtaccaaagctgtgaccaaattcacaagctcttaga |
45576477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 33216558 - 33216594
Alignment:
| Q |
40 |
catcaatgatatcttcgagaagcttgctcaagaatca |
76 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33216558 |
catcaatgatatcttcgtgaagcttgctcaagaatca |
33216594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 6e-35; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 96 - 219
Target Start/End: Original strand, 47317431 - 47317554
Alignment:
| Q |
96 |
acaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggc |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||| |||| ||||||||| || ||||| || |
|
|
| T |
47317431 |
acaagaagccaacaatcacttcaagggaaattcaaactgttgtcagacttattcttcctggtgaattggccaaacatgttgtttctgagggtaccaaagc |
47317530 |
T |
|
| Q |
196 |
tgtgactaagtttacaagctctta |
219 |
Q |
| |
|
|||||| |||||||| || ||||| |
|
|
| T |
47317531 |
tgtgaccaagtttactagttctta |
47317554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 8 - 198
Target Start/End: Complemental strand, 40180487 - 40180297
Alignment:
| Q |
8 |
tcaagcaaagccatgggaataatgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaa |
107 |
Q |
| |
|
|||||||| || |||||||| |||||||||||||| || |||||||| ||||| || ||||| ||||| || | | ||| | || ||||||||||| | |
|
|
| T |
40180487 |
tcaagcaaggctatgggaatcatgaacagtttcattaacgatatctttgagaaactcgctcaggaatcgtctcgtttggctaggtataacaagaagccga |
40180388 |
T |
|
| Q |
108 |
caatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgt |
198 |
Q |
| |
|
| || ||||| ||||| ||||| ||||| || ||| | ||||||||||| |||||||| || ||||||||||||||||| || |||||||| |
|
|
| T |
40180387 |
cgattacttctagggagattcaaactgctgttagattggttcttcctggagaattggctaaacatgctgtttctgaagggactaaggctgt |
40180297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 47317395 - 47317431
Alignment:
| Q |
40 |
catcaatgatatcttcgagaagcttgctcaagaatca |
76 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
47317395 |
catcaatgatatcttcgtgaagcttgctcaagaatca |
47317431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 14715433 - 14715485
Alignment:
| Q |
131 |
actgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctga |
183 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||| ||| ||||| |
|
|
| T |
14715433 |
actgcagtgagacttgttcttcctggagaattggccaagcatgttgtgtctga |
14715485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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