View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11436_high_25 (Length: 441)
Name: NF11436_high_25
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11436_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 15 - 425
Target Start/End: Complemental strand, 2529756 - 2529346
Alignment:
| Q |
15 |
attctaacaatttcacctatgtcctcgaaattgaatcacattctggtaatgttcttctttccacaggtttacaatctccacagccttattggtctatgca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2529756 |
attctaacaatttcacctatgtcctcgaaattgaatcacattctggtaatgttcttctttccacaggtttacaatctccacagccttattggtctatgca |
2529657 |
T |
|
| Q |
115 |
aaatgatatccgaaaaatagctaatgaaaacggcgacgaggtaaattttgcaactcttgatgcaaattcatggaagttctatgacaaaaggaaatctttg |
214 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2529656 |
aaatgatatccgaaaaatacctaatgaaaacggcgacgaggtaaattttgcaactcttgatgcaaattcatggaagttctatgacaaaaggaaatcattg |
2529557 |
T |
|
| Q |
215 |
ttgtggcaatttattttttctgatgctgcaaatgcaacttggatagcagttttaggaagtgatggcttcataactttcaccaatcttaaaaataaaggct |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2529556 |
ttgtggcaatttattttttctgatgctgcaaatgcaacttggatagcagttttaggaagtgatggcttcataactttcaccaatcttaaaaataaaggct |
2529457 |
T |
|
| Q |
315 |
caagtggttcatcgacaacaagaatacctcaagattcttgtagtacaccacaaccttgtggaccttataacatatgcattggtgacaaaaaatgcagttg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2529456 |
caagtggttcatcgacaacaagaatacctcaagattcttgtagtacaccacaaccttgtggaccttataacatatgcattggtgacaaaaaatgcagttg |
2529357 |
T |
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| Q |
415 |
cccttctgttc |
425 |
Q |
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||||||||||| |
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| T |
2529356 |
cccttctgttc |
2529346 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 374
Target Start/End: Original strand, 31027917 - 31027961
Alignment:
| Q |
330 |
caacaagaatacctcaagattcttgtagtacaccacaaccttgtg |
374 |
Q |
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||||||||||||| ||||||| |||| |||||||| ||||||||| |
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| T |
31027917 |
caacaagaataccacaagattattgtggtacaccagaaccttgtg |
31027961 |
T |
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