View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11436_high_30 (Length: 372)
Name: NF11436_high_30
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11436_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 5e-72; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 33879938 - 33880087
Alignment:
| Q |
1 |
aattgtatttagcatcttttacattgtcaaaacaattacaatatagcaagaggcaatggaggttgactttttggttttgaatgaaaacaaagactttata |
100 |
Q |
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| T |
33879938 |
aattgtatttagcatcttttacattgtcaaaacaattacaatatagcaagaggcaatggaggttgactttttggttttgaatgaaaacaaagactttata |
33880037 |
T |
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| Q |
101 |
ccgagagattatcattgaccttcactaaattattcaactaaggttgttta |
150 |
Q |
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| T |
33880038 |
ccgagagattatcattgactttcactaaattattgaactaagtttgttta |
33880087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 234 - 351
Target Start/End: Original strand, 33880400 - 33880516
Alignment:
| Q |
234 |
agtgtggaaaatacatgtttttcttttgaagttcat---agttacatacattcgaacttaaatgtgaagtgatattatttagttgtcgaaatatttaaaa |
330 |
Q |
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| T |
33880400 |
agtgtggaaaatacatgtttttcttttgaagttcatcatattaacatacattcgaacttaaatgtgaagtgatatta----gttgttgaaatatttaaaa |
33880495 |
T |
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| Q |
331 |
taaaaaatagctaacttggat |
351 |
Q |
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| T |
33880496 |
taaaaaatagctaacttggat |
33880516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 33875678 - 33875787
Alignment:
| Q |
12 |
gcatcttttacattgtcaaaacaattacaatatagcaagaggcaatggaggttgactttttggttttgaatgaaaacaaagactttataccgagagatta |
111 |
Q |
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| T |
33875678 |
gcatcttttacattgtcaaaacaattacaagatagcaagagataatgaaagttgacttagtggtttagaatggagacaaagaattcat---gagagatta |
33875774 |
T |
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| Q |
112 |
tcattgaccttca |
124 |
Q |
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| T |
33875775 |
ttattgactttca |
33875787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 33880316 - 33880364
Alignment:
| Q |
148 |
ttacaaaaaataacatgaaattatgagaaaatt---tagggttaacatt |
193 |
Q |
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| T |
33880316 |
ttacgaaaaataacatgaaattatgagaaaattaagtagggttaacatt |
33880364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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