View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11436_high_31 (Length: 369)
Name: NF11436_high_31
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11436_high_31 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold1445 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 9 - 369
Target Start/End: Complemental strand, 26372282 - 26371919
Alignment:
| Q |
9 |
accaaacaactcttatcatctttgcacgactagtctcgtacatcttgacaagcttaccaatggaagtttcaacatgatcggtgtggtaaaaataaacaga |
108 |
Q |
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| T |
26372282 |
accaaacaactcttatcatctttgcacgactagtctcgtacatcttgacaagcttaccaatggaagtttcaacatgatcggtgtggtaaaaataaacaga |
26372183 |
T |
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| Q |
109 |
atcatacagaaaatactcaacaccatcataaacaaaagaatcataaaactgtgtatctttgtttttcaaaccaattcctcttttgttcccccacttaaaa |
208 |
Q |
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| T |
26372182 |
atcatacagaaaatactcaacaccatcataaacaaaagaatcataaaactgtgtatgtttgtttttcacaccaattcctcttttgttcccccacttaaaa |
26372083 |
T |
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| Q |
209 |
tctccagcaacaattt---cttcctcacaataacgttgtgtttgttgtgaaggtggcattttagtaacaaaacttgagacttcgcagttgtgtgtgtgag |
305 |
Q |
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| T |
26372082 |
tctccaccaacaatttcttcttcctcacaataacgttgtgtttgttgtgaaggaggcattttagtaacaaaacttgagacctcgcagttgtgtgtgtgag |
26371983 |
T |
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| Q |
306 |
tatcagttagaagcggtgttcaccacttcgtctgcaacaaaagaagagggagaataatggagga |
369 |
Q |
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| T |
26371982 |
tatcagttagaagtggtgttcaccacttcgtctgcaacaaaagaagagggagaataatggagga |
26371919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1445 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: scaffold1445
Description:
Target: scaffold1445; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 9 - 214
Target Start/End: Complemental strand, 1233 - 1028
Alignment:
| Q |
9 |
accaaacaactcttatcatctttgcacgactagtctcgtacatcttgacaagcttaccaatggaagtttcaacatgatcggtgtggtaaaaataaacaga |
108 |
Q |
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||||||||||||| ||||||||| ||||| | |||| |||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||| | |
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| T |
1233 |
accaaacaactctgatcatctttctacgaccattctcaaacatcttgacaagcataccaatagaagtttcaacatgatcagtgtggtaaaaataaacaca |
1134 |
T |
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| Q |
109 |
atcatacagaaaatactcaacaccatcataaacaaaagaatcataaaactgtgtatctttgtttttcaaaccaattcctcttttgttcccccacttaaaa |
208 |
Q |
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||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| || |||| |||||||||||||||||||||||| |||||| |
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| T |
1133 |
atcatgtagaaaatactcaacaccttcataaacaaaagaatcatagaactgtgtatctttattcttcacaccaattcctcttttgttcccccatttaaaa |
1034 |
T |
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| Q |
209 |
tctcca |
214 |
Q |
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|||||| |
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| T |
1033 |
tctcca |
1028 |
T |
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