View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11436_high_36 (Length: 336)
Name: NF11436_high_36
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11436_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 19 - 325
Target Start/End: Complemental strand, 54393514 - 54393208
Alignment:
| Q |
19 |
gaaagtgtgtaaaccaacgccatggctggcattacctccaccaccgttgttcccgttaaactcaaagcctcgcacttcttctctaataaactctctattc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54393514 |
gaaagtgtgtaaaccaacgccatggctggcattacctccaccaccgttgttcccgttaaactcaaagcctcgcacttcttctctaataaactctctattc |
54393415 |
T |
|
| Q |
119 |
ctcattccctcaatttacaatcttctccctctttcactcttccttcccacgcaaccgttcgttacggtgttaacctccgtccttccgcctacggtggcgg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
54393414 |
ctcattccctcaatttacaatcttctccctctttcactcttccttcccacgcaaccgttcgttatggtgttaacctccgtccttccgcctacggtggcgg |
54393315 |
T |
|
| Q |
219 |
tggcaacttcagaagacctcctcctgacaaagacgccgacaatgaacaagctctcgacctctccacacttaggtacgtattctaactcatacttgattcc |
318 |
Q |
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|||||||||||||||| |||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54393314 |
tggcaacttcagaagagctcctcctgagaaagacgccgacgatggacaagctctcgacctctccacacttaggtacgtattctaactcatacttgattcc |
54393215 |
T |
|
| Q |
319 |
atttcat |
325 |
Q |
| |
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||||||| |
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| T |
54393214 |
atttcat |
54393208 |
T |
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