View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11436_high_4 (Length: 733)
Name: NF11436_high_4
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11436_high_4 |
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| [»] scaffold0455 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 96; Significance: 1e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 348 - 498
Target Start/End: Complemental strand, 5968968 - 5968818
Alignment:
| Q |
348 |
agtattaatatagattatgccaaattattccta-tagtacaattcagatatttataaattcaattatacaaaaatagtaccgaacatatcagtaaaacta |
446 |
Q |
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| T |
5968968 |
agtattaatatagattatgccaaattattcctaatagtaccattcagttatttataaattcaactagacaaaaatagtacata-catatcagtaaaacat |
5968870 |
T |
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| Q |
447 |
taactggacttggttgcaggtcgtggatgcaaaccaagttataacgacttct |
498 |
Q |
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| T |
5968869 |
tagctggacttggttgcaggtcgtggatgcaaaccaagttataatgacttct |
5968818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 176 - 285
Target Start/End: Complemental strand, 5969333 - 5969224
Alignment:
| Q |
176 |
ctgtttggactgaagtactgnnnnnnncattttcatccactagattacaatttctctaatgacaaaagtgtatggtcaacaagtgcactattcaacaaca |
275 |
Q |
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| T |
5969333 |
ctgtttggactgaagttctgttttgttcattttctttcactaaattataatttatctattgacaaaagtttatggtcaacaagtgcactattcaacaaca |
5969234 |
T |
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| Q |
276 |
attgcagttg |
285 |
Q |
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| T |
5969233 |
attgccgttg |
5969224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 203 - 286
Target Start/End: Original strand, 19852228 - 19852311
Alignment:
| Q |
203 |
cattttcatccactagattacaatttctctaatgacaaaagtgtatggtcaacaagtgcactattcaacaacaattgcagttga |
286 |
Q |
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| T |
19852228 |
cattttcttccactagattataatttatctattgacaaaagcttatggtctacaagtgtactattaaacaacaattgccgttga |
19852311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0455 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0455
Description:
Target: scaffold0455; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 203 - 277
Target Start/End: Original strand, 9424 - 9498
Alignment:
| Q |
203 |
cattttcatccactagattacaatttctctaatgacaaaagtgtatggtcaacaagtgcactattcaacaacaat |
277 |
Q |
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| T |
9424 |
cattttcttccactagattataatttatctattgacaaaagcttatggtctacaagtgtactattcaacaacaat |
9498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 203 - 277
Target Start/End: Original strand, 28131519 - 28131593
Alignment:
| Q |
203 |
cattttcatccactagattacaatttctctaatgacaaaagtgtatggtcaacaagtgcactattcaacaacaat |
277 |
Q |
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| T |
28131519 |
cattttcttccactagattataatttatctattgacaaaagcttatggtctacaagtgtactattcaacaacaat |
28131593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 17231808 - 17231875
Alignment:
| Q |
203 |
cattttcatccactagattacaatttctctaatgacaaaagtgtatggtcaacaagtgcactattcaa |
270 |
Q |
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| T |
17231808 |
cattttcttccactagattataatttatctattgacaaaagcttatggtctacaagtgtactattcaa |
17231875 |
T |
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