View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11436_high_41 (Length: 311)

Name: NF11436_high_41
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11436_high_41
NF11436_high_41
[»] chr6 (17 HSPs)
chr6 (18-167)||(34993490-34993646)
chr6 (20-143)||(35044283-35044406)
chr6 (245-302)||(1128458-1128515)
chr6 (245-302)||(24794934-24794991)
chr6 (182-291)||(29321952-29322061)
chr6 (182-302)||(6228236-6228356)
chr6 (245-300)||(31637345-31637400)
chr6 (245-302)||(15717052-15717109)
chr6 (245-298)||(19748102-19748155)
chr6 (182-302)||(17216957-17217077)
chr6 (259-299)||(21874274-21874314)
chr6 (193-292)||(9357165-9357264)
chr6 (257-300)||(25069864-25069907)
chr6 (256-302)||(7929124-7929170)
chr6 (264-302)||(30422166-30422204)
chr6 (258-301)||(7954974-7955018)
chr6 (258-302)||(25045739-25045783)
[»] chr1 (33 HSPs)
chr1 (182-302)||(14262697-14262817)
chr1 (183-293)||(30325020-30325129)
chr1 (200-302)||(47651871-47651972)
chr1 (200-302)||(50011506-50011608)
chr1 (245-302)||(2017723-2017780)
chr1 (205-302)||(8893859-8893956)
chr1 (199-300)||(52164364-52164465)
chr1 (182-302)||(10123029-10123148)
chr1 (182-302)||(15417793-15417913)
chr1 (246-302)||(49619971-49620027)
chr1 (255-302)||(4126898-4126945)
chr1 (245-300)||(22386275-22386330)
chr1 (200-302)||(24134618-24134720)
chr1 (185-299)||(50065012-50065126)
chr1 (245-302)||(27054689-27054746)
chr1 (266-303)||(30735826-30735863)
chr1 (245-302)||(34702352-34702409)
chr1 (258-302)||(12973330-12973374)
chr1 (245-297)||(19424050-19424102)
chr1 (182-302)||(40061442-40061562)
chr1 (245-300)||(4684216-4684271)
chr1 (182-229)||(39304199-39304246)
chr1 (264-302)||(15550885-15550923)
chr1 (268-302)||(23368794-23368828)
chr1 (245-302)||(7438620-7438677)
chr1 (273-302)||(22853828-22853857)
chr1 (245-302)||(24253682-24253739)
chr1 (245-302)||(43109277-43109334)
chr1 (273-302)||(44583587-44583616)
chr1 (245-301)||(5315562-5315618)
chr1 (266-302)||(25421853-25421889)
chr1 (258-302)||(39304255-39304299)
chr1 (258-302)||(48497265-48497309)
[»] chr3 (24 HSPs)
chr3 (200-302)||(50381713-50381815)
chr3 (182-302)||(32421347-32421467)
chr3 (182-302)||(9320935-9321055)
chr3 (182-299)||(47864638-47864755)
chr3 (182-302)||(33528181-33528301)
chr3 (245-302)||(39739273-39739330)
chr3 (245-292)||(33780312-33780359)
chr3 (182-291)||(16141329-16141438)
chr3 (245-302)||(46247259-46247316)
chr3 (258-302)||(2259156-2259200)
chr3 (258-302)||(25165439-25165483)
chr3 (258-302)||(34225194-34225238)
chr3 (258-302)||(46798581-46798625)
chr3 (262-301)||(23651126-23651165)
chr3 (259-302)||(30162656-30162699)
chr3 (200-302)||(11483612-11483714)
chr3 (251-301)||(30745214-30745264)
chr3 (245-302)||(8258151-8258208)
chr3 (245-293)||(27471512-27471560)
chr3 (266-302)||(27817127-27817163)
chr3 (245-301)||(31419583-31419639)
chr3 (245-297)||(38869230-38869282)
chr3 (270-302)||(49429460-49429492)
chr3 (182-302)||(50676843-50676963)
[»] chr4 (27 HSPs)
chr4 (183-302)||(35909005-35909125)
chr4 (182-302)||(16556450-16556570)
chr4 (182-302)||(46283121-46283241)
chr4 (247-302)||(36993040-36993095)
chr4 (245-302)||(27862870-27862927)
chr4 (245-302)||(42154565-42154622)
chr4 (245-302)||(43362207-43362264)
chr4 (245-305)||(19687633-19687693)
chr4 (205-301)||(24570210-24570306)
chr4 (200-302)||(43084446-43084548)
chr4 (252-302)||(52366206-52366256)
chr4 (257-302)||(8716441-8716486)
chr4 (245-302)||(23448972-23449029)
chr4 (183-292)||(25234835-25234944)
chr4 (245-302)||(51974746-51974803)
chr4 (206-302)||(2832071-2832167)
chr4 (258-306)||(22096443-22096491)
chr4 (266-302)||(31261764-31261800)
chr4 (258-302)||(40407013-40407057)
chr4 (259-302)||(49635431-49635474)
chr4 (258-299)||(8716556-8716597)
chr4 (245-302)||(13210203-13210260)
chr4 (245-302)||(38690665-38690722)
chr4 (245-302)||(45847965-45848022)
chr4 (245-302)||(50815706-50815763)
chr4 (182-302)||(22341838-22341958)
chr4 (200-300)||(23233943-23234043)
[»] chr2 (12 HSPs)
chr2 (182-302)||(25553122-25553241)
chr2 (182-303)||(33065233-33065354)
chr2 (182-298)||(3330177-3330293)
chr2 (258-299)||(6866510-6866551)
chr2 (245-302)||(11069384-11069441)
chr2 (245-302)||(18949723-18949780)
chr2 (258-302)||(16403524-16403568)
chr2 (258-302)||(27463578-27463622)
chr2 (194-302)||(31149090-31149197)
chr2 (258-302)||(34107494-34107538)
chr2 (266-302)||(43027154-43027190)
chr2 (200-302)||(19843357-19843459)
[»] chr8 (27 HSPs)
chr8 (182-299)||(19733045-19733162)
chr8 (182-299)||(38289211-38289328)
chr8 (200-302)||(1032569-1032671)
chr8 (182-302)||(34037924-34038044)
chr8 (182-306)||(38544901-38545024)
chr8 (182-299)||(8349459-8349576)
chr8 (245-302)||(10161963-10162020)
chr8 (213-302)||(36103929-36104018)
chr8 (205-302)||(41845428-41845525)
chr8 (182-283)||(43413862-43413963)
chr8 (258-302)||(4259858-4259902)
chr8 (245-301)||(40103522-40103578)
chr8 (245-302)||(13906665-13906722)
chr8 (245-302)||(30466678-30466735)
chr8 (245-302)||(41454866-41454923)
chr8 (261-300)||(43456707-43456746)
chr8 (200-302)||(3311439-3311541)
chr8 (268-302)||(11052646-11052680)
chr8 (245-295)||(16973028-16973078)
chr8 (258-299)||(8350438-8350479)
chr8 (245-302)||(44828472-44828529)
chr8 (270-302)||(22652682-22652714)
chr8 (266-302)||(23139073-23139109)
chr8 (266-302)||(29114101-29114137)
chr8 (270-302)||(32822115-32822147)
chr8 (266-302)||(38063976-38064012)
chr8 (245-301)||(39104607-39104663)
[»] chr7 (27 HSPs)
chr7 (205-302)||(33248801-33248898)
chr7 (200-289)||(43440701-43440790)
chr7 (245-302)||(42554633-42554690)
chr7 (245-302)||(1575693-1575750)
chr7 (245-302)||(31793467-31793524)
chr7 (182-302)||(12166081-12166201)
chr7 (182-288)||(4956068-4956174)
chr7 (264-302)||(36528277-36528315)
chr7 (200-302)||(40273820-40273922)
chr7 (258-302)||(3889853-3889897)
chr7 (266-302)||(46266667-46266703)
chr7 (258-302)||(48433762-48433806)
chr7 (259-302)||(23824644-23824687)
chr7 (267-302)||(37918679-37918714)
chr7 (264-302)||(24029984-24030022)
chr7 (258-292)||(34322076-34322110)
chr7 (184-302)||(48619796-48619913)
chr7 (245-302)||(8249704-8249761)
chr7 (245-302)||(14707292-14707348)
chr7 (245-302)||(27454010-27454067)
chr7 (245-302)||(42338286-42338343)
chr7 (245-301)||(9992610-9992666)
chr7 (270-302)||(15025155-15025187)
chr7 (258-302)||(26456057-26456101)
chr7 (258-302)||(28712367-28712411)
chr7 (266-302)||(44986593-44986629)
chr7 (245-281)||(45421341-45421377)
[»] chr5 (16 HSPs)
chr5 (183-299)||(15106864-15106980)
chr5 (259-302)||(87790-87833)
chr5 (200-302)||(31250146-31250248)
chr5 (200-302)||(38503251-38503353)
chr5 (200-302)||(43227865-43227967)
chr5 (265-302)||(13576322-13576359)
chr5 (182-302)||(930914-931034)
chr5 (266-302)||(1984249-1984285)
chr5 (182-302)||(15470597-15470717)
chr5 (261-300)||(7608118-7608157)
chr5 (258-301)||(9628117-9628160)
chr5 (245-304)||(17077358-17077417)
chr5 (264-302)||(15696206-15696244)
chr5 (245-302)||(12375451-12375508)
chr5 (261-302)||(15254210-15254251)
chr5 (245-301)||(31991800-31991856)
[»] scaffold0204 (1 HSPs)
scaffold0204 (265-301)||(10576-10612)
[»] scaffold0001 (1 HSPs)
scaffold0001 (182-302)||(419711-419831)
[»] scaffold0018 (1 HSPs)
scaffold0018 (258-302)||(121851-121895)


Alignment Details
Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 34993490 - 34993646
Alignment:
Q  18 attcaagacgttgaagttaaggggatcctctttcaagctttgtctctcagtgatgcaaatgagaataatgaaaataaccaaataagatagctgagagaat 117  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34993490 attcaagacgttgaagttaaagggatcctctttcaagctttgtctctcagtgatgcaaatgagaataatgaaaataaccaaataagatagctgagagaat 34993589  T
Q  118 -------acaagacactccactaagcttttttgctctgatctcttcacaacattaac 167  Q
           |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34993590 acaagtaacaagacactccactaagcttttttgctctgatctcttcacatcattaac 34993646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 35044283 - 35044406
Alignment:
Q  20 tcaagacgttgaagttaaggggatcctctttcaagctttgtctctcagtgatgcaaatgagaataatgaaaataaccaaataagatagctgagagaatac 119  Q
    |||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  35044283 tcaagacgttgaagttgaggggatcatcttttaagctttgtctctcagtgatgcaaatgagaataatgaaaataaccaaataagatagctgagagaatat 35044382  T
Q  120 aagacactccactaagcttttttg 143  Q
    || ||  ||||||| ||| |||||    
T  35044383 aatacgatccactaggctattttg 35044406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 1128458 - 1128515
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    |||||||||||| ||||| ||||| |||||||||||||||||||||||||||| ||||    
T  1128458 cgaaccccaacccctgcacatattatgcattatcccttatcaaatgagttaaggtcat 1128515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 24794934 - 24794991
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    |||| ||||||| ||||| |||||||||||||||||||| |||||||| |||||||||    
T  24794934 cgaatcccaacccctgcacatattgtgcattatcccttaccaaatgagctaagctcat 24794991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 291
Target Start/End: Original strand, 29321952 - 29322061
Alignment:
Q  182 gtcaagtaggttagtgattagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatccct 281  Q
    |||||||||  |||||  |||| ||||||| ||||||||||||||||| ||  || | |  | ||||||||| || ||||| ||||||||||||||||||    
T  29321952 gtcaagtagtctagtggctagagaaattcaccttaaagataaataagtgggatgtctggggttcgaaccccagcccctgcacatattgtgcattatccct 29322051  T
Q  282 tatcaaatga 291  Q
    || |||||||    
T  29322052 taccaaatga 29322061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 302
Target Start/End: Original strand, 6228236 - 6228356
Alignment:
Q  182 gtcaagtaggttagtgattagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatccct 281  Q
    |||||||||  |||||  |||| ||||||| ||||||||| ||||||| ||| ||   |  | ||||||||  || ||||| ||||||||||||||||||    
T  6228236 gtcaagtagcctagtggctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggcccctgcacatattgtgcattatccct 6228335  T
Q  282 tatcaaatgagttaagctcat 302  Q
    || |||||||| |||||||||    
T  6228336 taccaaatgagctaagctcat 6228356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 300
Target Start/End: Complemental strand, 31637400 - 31637345
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctc 300  Q
    |||||||| ||| ||||| ||||||||||||||||| || ||||||||||||||||    
T  31637400 cgaaccccgacccctgcaaatattgtgcattatcccataccaaatgagttaagctc 31637345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 15717052 - 15717109
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||||||  || ||||| |||||||||||||||||||| |||||||| |||||||||    
T  15717052 cgaaccccggcccctgcacatattgtgcattatcccttaccaaatgagctaagctcat 15717109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 19748155 - 19748102
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagc 298  Q
    |||||||||| | ||||| |||||||||||||||||||| |||||||| |||||    
T  19748155 cgaaccccaatccctgcacatattgtgcattatcccttaccaaatgagctaagc 19748102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 302
Target Start/End: Complemental strand, 17217077 - 17216957
Alignment:
Q  182 gtcaagtaggttagtgattagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatccct 281  Q
    |||||||||  |||||  |||| ||||||| ||||||||| ||||||| ||| ||   || | ||||| || ||| || || ||||| ||||||||||||    
T  17217077 gtcaagtagcctagtggctagagaaattcaccttaaagatgaataagtggggtgtccggagttcgaactccgacccctacacatattatgcattatccct 17216978  T
Q  282 tatcaaatgagttaagctcat 302  Q
    || |||||||| |||||||||    
T  17216977 taccaaatgagctaagctcat 17216957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 21874274 - 21874314
Alignment:
Q  259 tgcatatattgtgcattatcccttatcaaatgagttaagct 299  Q
    |||| |||||||||||||||||||| |||||||||||||||    
T  21874274 tgcacatattgtgcattatcccttaccaaatgagttaagct 21874314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 292
Target Start/End: Complemental strand, 9357264 - 9357165
Alignment:
Q  193 tagtgattagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatcccttatcaaatgag 292  Q
    ||||||||||| ||||||| ||||||| | ||||| |  || || | || | ||||||||| || ||||| | ||||| |||||||||||||||||||||    
T  9357264 tagtgattagagaaattcaccttaaaggtgaataaattaggtgtctggagttcgaaccccagcccctgcacaaattgtacattatcccttatcaaatgag 9357165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 300
Target Start/End: Complemental strand, 25069907 - 25069864
Alignment:
Q  257 tctgcatatattgtgcattatcccttatcaaatgagttaagctc 300  Q
    |||||||||| | |||||||||| ||||||||||||||||||||    
T  25069907 tctgcatataatatgcattatcctttatcaaatgagttaagctc 25069864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 7929124 - 7929170
Alignment:
Q  256 ctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||||||||||| || ||||||||||||||| |||||||| |||||    
T  7929124 ctctgcatatattatgtattatcccttatcaagtgagttaaactcat 7929170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 302
Target Start/End: Original strand, 30422166 - 30422204
Alignment:
Q  264 atattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||||| |||||||||||| ||||||||||||||||||    
T  30422166 atattgtacattatcccttaccaaatgagttaagctcat 30422204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 301
Target Start/End: Original strand, 7954974 - 7955018
Alignment:
Q  258 ctgcatatattgtgcattatcccttatc-aaatgagttaagctca 301  Q
    ||||| |||||||||||||||||||| | ||||||||||||||||    
T  7954974 ctgcacatattgtgcattatcccttaccaaaatgagttaagctca 7955018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 25045783 - 25045739
Alignment:
Q  258 ctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||| |||||||| ||||||||||| |||||||| |||||||||    
T  25045783 ctgcacatattgtgaattatcccttaccaaatgagctaagctcat 25045739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 302
Target Start/End: Original strand, 14262697 - 14262817
Alignment:
Q  182 gtcaagtaggttagtgattagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatccct 281  Q
    ||||| ||| ||||||  |||| ||||||| ||||||||| ||||||||||| ||   |  | |||||||| ||| ||||||||||||||||||||||||    
T  14262697 gtcaaatagcttagtggctagagaaattcaccttaaagatgaataagtagggtgtccggggttcgaaccccgacccctgcatatattgtgcattatccct 14262796  T
Q  282 tatcaaatgagttaagctcat 302  Q
    ||||||||||||||| |||||    
T  14262797 tatcaaatgagttaatctcat 14262817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 183 - 293
Target Start/End: Original strand, 30325020 - 30325129
Alignment:
Q  183 tcaagtaggttagtgattagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatccctt 282  Q
    |||||||| ||||||  |||| ||||||||||||||||| ||||| ||||| | || || | ||| || ||||| || || ||||| |||||||||||||    
T  30325020 tcaagtagtttagtggctagagaaattcatcttaaagatgaataaatagggtg-ttcgagttcgagcctcaacccctacacatattatgcattatccctt 30325118  T
Q  283 atcaaatgagt 293  Q
    |||||||||||    
T  30325119 atcaaatgagt 30325129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 200 - 302
Target Start/End: Complemental strand, 47651972 - 47651871
Alignment:
Q  200 tagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagct 299  Q
    |||| ||||||| |||||| || ||||||| ||  || ||| || ||||||||| || ||||| |||||||||||||||||||| |||||||| ||||||    
T  47651972 tagagaaattcaccttaaa-atgaataagtgggatgtctaggattcgaaccccagcccctgcacatattgtgcattatcccttaccaaatgagctaagct 47651874  T
Q  300 cat 302  Q
    |||    
T  47651873 cat 47651871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 200 - 302
Target Start/End: Complemental strand, 50011608 - 50011506
Alignment:
Q  200 tagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagct 299  Q
    |||| ||||||| ||||||||| ||||||| ||  || | |  | ||||||||| || ||||| |||||||||||||||||||| |||||||| ||||||    
T  50011608 tagagaaattcaccttaaagatgaataagtgggatgtctggggttcgaaccccagcccctgcacatattgtgcattatcccttaccaaatgagctaagct 50011509  T
Q  300 cat 302  Q
    |||    
T  50011508 cat 50011506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 2017723 - 2017780
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||||||| ||| |||| |||||||||||||||||||| |||||||| |||||||||    
T  2017723 cgaaccccagcctatgcacatattgtgcattatcccttaccaaatgagctaagctcat 2017780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 302
Target Start/End: Complemental strand, 8893956 - 8893859
Alignment:
Q  205 aaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||||| ||||||||| ||||||| ||| |||| |  | |||||||| ||| ||| | |||||||||||||||||||| |||||||  |||||||||    
T  8893956 aaattcaccttaaagatgaataagtggggtgtttggggttcgaaccccgacccctgtacatattgtgcattatcccttaccaaatgaactaagctcat 8893859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 300
Target Start/End: Original strand, 52164364 - 52164465
Alignment:
Q  199 ttagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagc 298  Q
    ||||| ||||||| |||||| || ||||||| ||| ||   |||| |||||||| | | ||||| ||||||||||||||| |||| ||||||||||||||    
T  52164364 ttagagaaattcaccttaaaaattaataagtggggtgtccggaattcgaaccccgatccctgcacatattgtgcattatctcttaccaaatgagttaagc 52164463  T
Q  299 tc 300  Q
    ||    
T  52164464 tc 52164465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 302
Target Start/End: Original strand, 10123029 - 10123148
Alignment:
Q  182 gtcaagtaggttagtgattagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatccct 281  Q
    |||||||||  |||||  |||| ||||||| ||||||||| ||||||| ||| |||| |  | |||||||| ||| || || |||||||  |||||||||    
T  10123029 gtcaagtagcctagtggctagagaaattcaccttaaagatgaataagtggggtgtttggggttcgaaccccgacccctacacatattgta-attatccct 10123127  T
Q  282 tatcaaatgagttaagctcat 302  Q
    || ||||||||||||||||||    
T  10123128 taccaaatgagttaagctcat 10123148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 302
Target Start/End: Original strand, 15417793 - 15417913
Alignment:
Q  182 gtcaagtaggttagtgattagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatccct 281  Q
    |||||||||  |||||| |||| ||||||||||||||||| ||||||| ||| ||      | ||||||||| || || || |||||||||||||||| |    
T  15417793 gtcaagtagcctagtgactagagaaattcatcttaaagatgaataagtggggtgtccgagcttcgaaccccagcccctacacatattgtgcattatcctt 15417892  T
Q  282 tatcaaatgagttaagctcat 302  Q
    || |||||||| |||||||||    
T  15417893 taccaaatgagctaagctcat 15417913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 246 - 302
Target Start/End: Complemental strand, 49620027 - 49619971
Alignment:
Q  246 gaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||||| ||| ||||| |||||||||||||||||||| |||||||| |||||||||    
T  49620027 gaaccccgacccctgcacatattgtgcattatcccttaccaaatgagctaagctcat 49619971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 302
Target Start/End: Complemental strand, 4126945 - 4126898
Alignment:
Q  255 cctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||||||||||||||||||||||||||| |||||||| ||| |||||    
T  4126945 cctctgcatatattgtgcattatcccttaccaaatgagctaaactcat 4126898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 300
Target Start/End: Original strand, 22386275 - 22386330
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctc 300  Q
    |||||||||||| ||||| ||||||||||| |||||||| |||||||| |||||||    
T  22386275 cgaaccccaacccctgcacatattgtgcataatcccttaccaaatgagctaagctc 22386330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 302
Target Start/End: Original strand, 24134618 - 24134720
Alignment:
Q  200 tagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagct 299  Q
    |||| ||||||| ||||||||| ||||||| ||| ||   |  | ||||||||  || ||||| |||||||||||||||||||| |||||||| ||||||    
T  24134618 tagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggcccctgcacatattgtgcattatcccttaccaaatgagctaagct 24134717  T
Q  300 cat 302  Q
    |||    
T  24134718 cat 24134720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 299
Target Start/End: Complemental strand, 50065126 - 50065012
Alignment:
Q  185 aagtaggttagtgattagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatcccttat 284  Q
    |||||| ||||||  |||| ||||||| ||||||||| ||||||| ||| ||     || ||||||||   | ||||| |||||||||||||||||||||    
T  50065126 aagtagcttagtggctagagaaattcaccttaaagatgaataagtggggtgtccgagattcgaaccccggtccctgcacatattgtgcattatcccttat 50065027  T
Q  285 caaatgagttaagct 299  Q
    |||||||| ||||||    
T  50065026 caaatgagctaagct 50065012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 27054746 - 27054689
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||||||  || ||||| |||||||||||||||||||| |||||||| |||||||||    
T  27054746 cgaaccccggcccctgcagatattgtgcattatcccttaccaaatgagctaagctcat 27054689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 266 - 303
Target Start/End: Complemental strand, 30735863 - 30735826
Alignment:
Q  266 attgtgcattatcccttatcaaatgagttaagctcatt 303  Q
    |||||||||||||||||| |||||||||||||||||||    
T  30735863 attgtgcattatcccttaccaaatgagttaagctcatt 30735826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 34702352 - 34702409
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||||||  || ||||| |||||||||||||||||||| |||||||| |||||||||    
T  34702352 cgaaccccggcccctgcacatattgtgcattatcccttaccaaatgagctaagctcat 34702409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 302
Target Start/End: Original strand, 12973330 - 12973374
Alignment:
Q  258 ctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    |||||||||||||||||||||||||| |||||||| ||| |||||    
T  12973330 ctgcatatattgtgcattatcccttaccaaatgagctaaactcat 12973374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 19424102 - 19424050
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaag 297  Q
    |||||||| ||| ||||||||| | ||||||||||||||||||||||| ||||    
T  19424102 cgaaccccgacccctgcatataatatgcattatcccttatcaaatgagctaag 19424050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 302
Target Start/End: Complemental strand, 40061562 - 40061442
Alignment:
Q  182 gtcaagtaggttagtgattagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatccct 281  Q
    |||||||||  |||||  |||| |||| || ||||||||| ||||||| ||| ||   || | ||||||||| || ||  | |||||||||| |||||||    
T  40061562 gtcaagtagcctagtggctagagaaatccaccttaaagatgaataagtggggtgtccggagttcgaaccccagcccctatacatattgtgcactatccct 40061463  T
Q  282 tatcaaatgagttaagctcat 302  Q
    || ||||||||||||||||||    
T  40061462 taccaaatgagttaagctcat 40061442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 300
Target Start/End: Original strand, 4684216 - 4684271
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctc 300  Q
    |||||||| ||| || |||||||||| |||||||||||| |||||||| |||||||    
T  4684216 cgaaccccgacccctacatatattgtacattatcccttaccaaatgaggtaagctc 4684271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 39304199 - 39304246
Alignment:
Q  182 gtcaagtaggttagtgattagaaaaattcatcttaaagataaataagt 229  Q
    |||| |||| |||||||| ||| |||||||||||||||||||||||||    
T  39304199 gtcatgtagtttagtgatcagagaaattcatcttaaagataaataagt 39304246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 302
Target Start/End: Complemental strand, 15550923 - 15550885
Alignment:
Q  264 atattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    |||||||||||||||||||| |||||||| |||||||||    
T  15550923 atattgtgcattatcccttaccaaatgagataagctcat 15550885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 302
Target Start/End: Original strand, 23368794 - 23368828
Alignment:
Q  268 tgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||||||||||||||||||||||| |||||||||    
T  23368794 tgtgcattatcccttatcaaatgagctaagctcat 23368828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 7438677 - 7438620
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    |||||||| ||| || || | |||||||||||||||||| |||||||| |||||||||    
T  7438677 cgaaccccgacccctacacaaattgtgcattatcccttaccaaatgagctaagctcat 7438620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 302
Target Start/End: Original strand, 22853828 - 22853857
Alignment:
Q  273 attatcccttatcaaatgagttaagctcat 302  Q
    ||||||||||||||||||||||||||||||    
T  22853828 attatcccttatcaaatgagttaagctcat 22853857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 24253682 - 24253739
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    |||| ||| ||| ||||||| ||| |||||||||||||||||| |||| |||||||||    
T  24253682 cgaatcccgacccctgcataaattatgcattatcccttatcaagtgagctaagctcat 24253739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 43109277 - 43109334
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||||||  || ||||| ||||| |||||||||||||| |||||||| |||||||||    
T  43109277 cgaaccccggcccctgcacatattttgcattatcccttaccaaatgagctaagctcat 43109334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 302
Target Start/End: Complemental strand, 44583616 - 44583587
Alignment:
Q  273 attatcccttatcaaatgagttaagctcat 302  Q
    ||||||||||||||||||||||||||||||    
T  44583616 attatcccttatcaaatgagttaagctcat 44583587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 5315618 - 5315562
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctca 301  Q
    |||||||||||||||||||||| | ||||||||    ||||||||||| ||||||||    
T  5315618 cgaaccccaacctctgcatataatatgcattatgttctatcaaatgagctaagctca 5315562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 302
Target Start/End: Complemental strand, 25421889 - 25421853
Alignment:
Q  266 attgtgcattatcccttatcaaatgagttaagctcat 302  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  25421889 attgtgcattgtcccttaccaaatgagttaagctcat 25421853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 302
Target Start/End: Original strand, 39304255 - 39304299
Alignment:
Q  258 ctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||| ||||| |||||||||||||| |||||||| |||||||||    
T  39304255 ctgcacatattatgcattatcccttaccaaatgagctaagctcat 39304299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 302
Target Start/End: Original strand, 48497265 - 48497309
Alignment:
Q  258 ctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||| |||||||||||||||||||| |||||||| ||| |||||    
T  48497265 ctgcacatattgtgcattatcccttaccaaatgagctaaactcat 48497309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 200 - 302
Target Start/End: Complemental strand, 50381815 - 50381713
Alignment:
Q  200 tagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagct 299  Q
    |||| ||||||| ||||||||| ||||||| ||| ||   | || |||||||| ||| |||||||||||||||||||||||||| |||||||||||||||    
T  50381815 tagagaaattcaccttaaagatgaataagtggggtgtccgggattcgaaccccgacccctgcatatattgtgcattatcccttaccaaatgagttaagct 50381716  T
Q  300 cat 302  Q
    |||    
T  50381715 cat 50381713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 182 - 302
Target Start/End: Complemental strand, 32421467 - 32421347
Alignment:
Q  182 gtcaagtaggttagtgattagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatccct 281  Q
    ||||||||| ||||||  |||||||||||||||||||||| ||||||| ||| |||     | |||||||| ||| ||||||||||| ||||||||||||    
T  32421467 gtcaagtagtttagtggctagaaaaattcatcttaaagatgaataagtggggagttcgaggttcgaaccccgacccctgcatatattatgcattatccct 32421368  T
Q  282 tatcaaatgagttaagctcat 302  Q
    || || ||||| |||||||||    
T  32421367 taccagatgagctaagctcat 32421347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 302
Target Start/End: Original strand, 9320935 - 9321055
Alignment:
Q  182 gtcaagtaggttagtgattagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatccct 281  Q
    |||||||||  ||||| ||||| ||||||||||| ||||| ||||||| ||| |||  |  | |||||||||||| ||||| | ||||| ||||||||||    
T  9320935 gtcaagtagcctagtggttagagaaattcatctttaagatgaataagtggggtgttcgggtttcgaaccccaacccctgcacaaattgtacattatccct 9321034  T
Q  282 tatcaaatgagttaagctcat 302  Q
    ||||||||||| ||| |||||    
T  9321035 tatcaaatgagctaaactcat 9321055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 182 - 299
Target Start/End: Complemental strand, 47864755 - 47864638
Alignment:
Q  182 gtcaagtaggttagtgattagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatccct 281  Q
    |||||||||  |||||  |||| ||||||| ||||||||| ||||||| ||| ||   |  | |||||||||||| ||||| ||||||||||||||||||    
T  47864755 gtcaagtagcctagtggctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccaacccctgcacatattgtgcattatccct 47864656  T
Q  282 tatcaaatgagttaagct 299  Q
    || |||||||| ||||||    
T  47864655 taccaaatgagctaagct 47864638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 302
Target Start/End: Original strand, 33528181 - 33528301
Alignment:
Q  182 gtcaagtaggttagtgattagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatccct 281  Q
    |||||||||  |||||  |||| ||||||| ||||||||| ||||||| ||| || | |  | ||||||||| || ||||| | ||||||||||||||||    
T  33528181 gtcaagtagcctagtggctagagaaattcaccttaaagatgaataagtggggtgtctggggttcgaaccccagcccctgcacaaattgtgcattatccct 33528280  T
Q  282 tatcaaatgagttaagctcat 302  Q
    || |||||||| |||||||||    
T  33528281 taccaaatgagctaagctcat 33528301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 39739330 - 39739273
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    |||||||||| | ||||| |||||||||||||||||||| |||||||| |||||||||    
T  39739330 cgaaccccaatccctgcacatattgtgcattatcccttaccaaatgagctaagctcat 39739273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 292
Target Start/End: Complemental strand, 33780359 - 33780312
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgag 292  Q
    |||||||||||| ||| |||||||||||||||||||||| ||||||||    
T  33780359 cgaaccccaacccctgtatatattgtgcattatcccttaccaaatgag 33780312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 291
Target Start/End: Original strand, 16141329 - 16141438
Alignment:
Q  182 gtcaagtaggttagtgattagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatccct 281  Q
    |||||||||  ||||| ||||| ||||| | ||| ||||| ||||||| ||| || | || | ||||||||| ||  || | ||||||||||||||||||    
T  16141329 gtcaagtagcctagtggttagataaatttacctttaagatgaataagtggggtgtctggagttcgaaccccagcccttgtacatattgtgcattatccct 16141428  T
Q  282 tatcaaatga 291  Q
    ||||||||||    
T  16141429 tatcaaatga 16141438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 46247316 - 46247259
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||||||| || ||||| | |||||||||||||||||| |||||||| |||||||||    
T  46247316 cgaaccccagcccctgcacaaattgtgcattatcccttaccaaatgagctaagctcat 46247259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 2259200 - 2259156
Alignment:
Q  258 ctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||| |||||||||||||||||||| |||||||| |||||||||    
T  2259200 ctgcacatattgtgcattatcccttaccaaatgagctaagctcat 2259156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 25165483 - 25165439
Alignment:
Q  258 ctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||| |||||||||||||||||||| |||||||| |||||||||    
T  25165483 ctgcacatattgtgcattatcccttaccaaatgagctaagctcat 25165439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 34225238 - 34225194
Alignment:
Q  258 ctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||| |||||||||||||||||||| |||||||| |||||||||    
T  34225238 ctgcacatattgtgcattatcccttaccaaatgagctaagctcat 34225194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 46798625 - 46798581
Alignment:
Q  258 ctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||| |||||||||||||||||| | ||||||||||||||||||    
T  46798625 ctgcacatattgtgcattatccctcaccaaatgagttaagctcat 46798581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 301
Target Start/End: Original strand, 23651126 - 23651165
Alignment:
Q  262 atatattgtgcattatcccttatcaaatgagttaagctca 301  Q
    ||||||| ||||||||| ||||||||||||||||||||||    
T  23651126 atatattatgcattatctcttatcaaatgagttaagctca 23651165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 302
Target Start/End: Complemental strand, 30162699 - 30162656
Alignment:
Q  259 tgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    |||| |||||||||||||||||||| |||||||| |||||||||    
T  30162699 tgcacatattgtgcattatcccttaccaaatgagctaagctcat 30162656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 302
Target Start/End: Complemental strand, 11483714 - 11483612
Alignment:
Q  200 tagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagct 299  Q
    |||| ||||||| ||||||||| ||||||| ||| ||   || | |||||||   || ||||| ||||| |||||||||||||| |||||||| ||||||    
T  11483714 tagagaaattcaccttaaagatgaataagtggggtgtccggagttcgaaccctggcccctgcacatattttgcattatcccttaccaaatgagctaagct 11483615  T
Q  300 cat 302  Q
    |||    
T  11483614 cat 11483612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 301
Target Start/End: Original strand, 30745214 - 30745264
Alignment:
Q  251 ccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctca 301  Q
    |||||| ||| ||||||| ||||||||||||||||||||||| ||| ||||    
T  30745214 ccaacccctgtatatattatgcattatcccttatcaaatgagctaaactca 30745264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 8258208 - 8258151
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||| || ||| ||||| ||||||||||||| || ||| ||||||||||||||||||    
T  8258208 cgaactccgacccctgcacatattgtgcattaaccattaccaaatgagttaagctcat 8258151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 27471560 - 27471512
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagt 293  Q
    |||||||||||| ||| | ||||| |||||||||||||| |||||||||    
T  27471560 cgaaccccaacccctgtacatattatgcattatcccttaccaaatgagt 27471512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 302
Target Start/End: Original strand, 27817127 - 27817163
Alignment:
Q  266 attgtgcattatcccttatcaaatgagttaagctcat 302  Q
    |||||||||||||||||| |||||||| |||||||||    
T  27817127 attgtgcattatcccttaccaaatgaggtaagctcat 27817163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 31419639 - 31419583
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctca 301  Q
    ||||||||| || || || ||||||||| || ||||||| |||||||||||||||||    
T  31419639 cgaaccccagcccctacacatattgtgcgttgtcccttaccaaatgagttaagctca 31419583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 38869230 - 38869282
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaag 297  Q
    |||||||| ||| |||||| |||| |||||||||||||| ||| |||||||||    
T  38869230 cgaaccccgacccctgcatgtattatgcattatcccttaccaagtgagttaag 38869282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 270 - 302
Target Start/End: Complemental strand, 49429492 - 49429460
Alignment:
Q  270 tgcattatcccttatcaaatgagttaagctcat 302  Q
    |||||||||||||| ||||||||||||||||||    
T  49429492 tgcattatcccttaccaaatgagttaagctcat 49429460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 302
Target Start/End: Original strand, 50676843 - 50676963
Alignment:
Q  182 gtcaagtaggttagtgattagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatccct 281  Q
    |||||||||  ||||| ||||| ||||||| ||||||| | ||||||| ||| |||  |  | |||||||||||| || |||||| | || ||| |||||    
T  50676843 gtcaagtagtctagtggttagagaaattcaccttaaaggtgaataagtggggtgttcggggttcgaaccccaacccctacatataatatgtattgtccct 50676942  T
Q  282 tatcaaatgagttaagctcat 302  Q
    || ||| |||||||| |||||    
T  50676943 taccaagtgagttaaactcat 50676963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 183 - 302
Target Start/End: Original strand, 35909005 - 35909125
Alignment:
Q  183 tcaagtaggttagtgattagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaacc-ccaacctctgcatatattgtgcattatccct 281  Q
    |||||||  |||||| || |||||||||| ||||||||||||||||| ||| || | | || |||||| || ||| ||||||||||||||||||||||||    
T  35909005 tcaagtaacttagtggttggaaaaattcaccttaaagataaataagtggggtgtctgggattcgaacctccgacccctgcatatattgtgcattatccct 35909104  T
Q  282 tatcaaatgagttaagctcat 302  Q
    ||  ||||||| |||||||||    
T  35909105 tacaaaatgagctaagctcat 35909125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 302
Target Start/End: Complemental strand, 16556570 - 16556450
Alignment:
Q  182 gtcaagtaggttagtgattagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatccct 281  Q
    |||||||||  |||||  |||| ||||||| ||||||||| ||||||| ||| |||  |  | |||||||| ||| ||||| ||||||||||||||||||    
T  16556570 gtcaagtagcctagtggctagagaaattcaccttaaagatgaataagtggggtgttcggggttcgaaccccgacccctgcacatattgtgcattatccct 16556471  T
Q  282 tatcaaatgagttaagctcat 302  Q
    || |||||||| |||||||||    
T  16556470 taccaaatgagctaagctcat 16556450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 302
Target Start/End: Complemental strand, 46283241 - 46283121
Alignment:
Q  182 gtcaagtaggttagtgattagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatccct 281  Q
    |||||||||  |||||| |||| ||||||| ||||||||| ||||||| ||| ||   |  | ||||||||  || ||||| ||||||||||||||||||    
T  46283241 gtcaagtagtctagtgactagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggccgctgcacatattgtgcattatccct 46283142  T
Q  282 tatcaaatgagttaagctcat 302  Q
    || |||||||| |||||||||    
T  46283141 taccaaatgaggtaagctcat 46283121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 302
Target Start/End: Complemental strand, 36993095 - 36993040
Alignment:
Q  247 aaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    |||||||||| || || ||||||||||||||||||||||||||||| |||||||||    
T  36993095 aaccccaaccccttcacatattgtgcattatcccttatcaaatgagctaagctcat 36993040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 27862870 - 27862927
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||||||| || ||||| | ||||||||||||||||||||||||||| |||||||||    
T  27862870 cgaaccccagcccctgcacaaattgtgcattatcccttatcaaatgagctaagctcat 27862927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 42154622 - 42154565
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    |||||||| ||||||||| |||||||| ||||||||||| ||||| ||||||||||||    
T  42154622 cgaaccccgacctctgcacatattgtgaattatcccttaccaaataagttaagctcat 42154565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 43362207 - 43362264
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    |||||||| ||| ||| |||||||||||||||||||||| |||||||| |||||||||    
T  43362207 cgaaccccgacccctgaatatattgtgcattatcccttagcaaatgagctaagctcat 43362264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 19687633 - 19687693
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcattga 305  Q
    |||||| || |||| ||| ||||||| ||||||||||||||||||||||||| ||||||||    
T  19687633 cgaacctcagcctcagcacatattgtacattatcccttatcaaatgagttaatctcattga 19687693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 301
Target Start/End: Complemental strand, 24570306 - 24570210
Alignment:
Q  205 aaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctca 301  Q
    ||||||| ||||||| | ||||||||||| |||  |  | |||||||||||| || ||||||||||||||||||||||| ||||   ||||||||||    
T  24570306 aaattcaccttaaagttgaataagtagggtgttcggggttcgaaccccaacccctacatatattgtgcattatcccttaccaaaaatgttaagctca 24570210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 302
Target Start/End: Complemental strand, 43084548 - 43084446
Alignment:
Q  200 tagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagct 299  Q
    |||| ||||||| ||||||||| ||||||| |||     || || |||||||| ||| ||  |||||||||||||||| ||||| |||||||||||||||    
T  43084548 tagagaaattcaccttaaagatgaataagtggggtaaccaggattcgaaccccgacccctatatatattgtgcattattccttaccaaatgagttaagct 43084449  T
Q  300 cat 302  Q
    |||    
T  43084448 cat 43084446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 52366256 - 52366206
Alignment:
Q  252 caacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||| ||||| |||||||||||||||||||| |||||||||||| |||||    
T  52366256 caacccctgcacatattgtgcattatcccttaccaaatgagttaaactcat 52366206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 8716441 - 8716486
Alignment:
Q  257 tctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    |||||| ||||||||||||||||||||||||||||| |||| ||||    
T  8716441 tctgcacatattgtgcattatcccttatcaaatgagctaagttcat 8716486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 23449029 - 23448972
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    |||||||||||| ||||| |||||||||||||||||||| ||||| || |||| ||||    
T  23449029 cgaaccccaacccctgcacatattgtgcattatcccttaccaaataagctaagttcat 23448972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 292
Target Start/End: Original strand, 25234835 - 25234944
Alignment:
Q  183 tcaagtaggttagtgattagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatccctt 282  Q
    ||||||||  ||||| ||||| ||||||| ||||||||| ||||| | ||| || | |  | |||||| ||||| || ||  ||||||||||||||||||    
T  25234835 tcaagtagtctagtggttagagaaattcaccttaaagatgaataactggggtgtctggggttcgaacctcaacccctacacttattgtgcattatccctt 25234934  T
Q  283 atcaaatgag 292  Q
    ||||||||||    
T  25234935 atcaaatgag 25234944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 51974803 - 51974746
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    |||| ||| ||| ||||| |||||||||||||||||||| |||||||| |||||||||    
T  51974803 cgaatcccgacccctgcacatattgtgcattatcccttaccaaatgagctaagctcat 51974746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 302
Target Start/End: Original strand, 2832071 - 2832167
Alignment:
Q  206 aattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    |||||| ||||||||| ||||||| ||| |||| |  | |||||||| ||| ||||| ||||||||||| | |||||| || ||||| |||||||||    
T  2832071 aattcaccttaaagatgaataagtggggtgtttggggttcgaaccccgacccctgcacatattgtgcatcaccccttaccagatgagctaagctcat 2832167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 22096443 - 22096491
Alignment:
Q  258 ctgcatatattgtgcattatcccttatcaaatgagttaagctcattgag 306  Q
    ||||| |||||||||||||||||||| ||||||| |||| |||||||||    
T  22096443 ctgcacatattgtgcattatcccttaccaaatgaattaaactcattgag 22096491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 302
Target Start/End: Original strand, 31261764 - 31261800
Alignment:
Q  266 attgtgcattatcccttatcaaatgagttaagctcat 302  Q
    |||||||||||||||||||||||||| ||||||||||    
T  31261764 attgtgcattatcccttatcaaatgaattaagctcat 31261800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 302
Target Start/End: Original strand, 40407013 - 40407057
Alignment:
Q  258 ctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||| |||||||||||||||||||| |||||||| |||||||||    
T  40407013 ctgcacatattgtgcattatcccttaccaaatgagctaagctcat 40407057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 302
Target Start/End: Complemental strand, 49635474 - 49635431
Alignment:
Q  259 tgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||||||||||||||||||||||| |||||||| ||| |||||    
T  49635474 tgcatatattgtgcattatcccttaccaaatgagctaaactcat 49635431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 299
Target Start/End: Complemental strand, 8716597 - 8716556
Alignment:
Q  258 ctgcatatattgtgcattatcccttatcaaatgagttaagct 299  Q
    ||||| |||||||||||||||||||| |||||||| ||||||    
T  8716597 ctgcacatattgtgcattatcccttaccaaatgagataagct 8716556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 13210203 - 13210260
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||||||  || ||||| |||||||||||||||||| | |||||||| |||||||||    
T  13210203 cgaaccccggcccctgcacatattgtgcattatccctgaccaaatgagctaagctcat 13210260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 38690722 - 38690665
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    |||||||| ||| ||||||||| | |||||||||||||| ||| |||| |||||||||    
T  38690722 cgaaccccgacccctgcatataatatgcattatcccttaccaagtgagctaagctcat 38690665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 45847965 - 45848022
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    |||||||| | | ||||| ||||| ||||||||||||||||||||||| |||| ||||    
T  45847965 cgaaccccgatccctgcacatattatgcattatcccttatcaaatgagataagttcat 45848022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 50815763 - 50815706
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||||||  || ||||| | |||||||||||||| |||||||||||| |||||||||    
T  50815763 cgaaccccggcccctgcacaaattgtgcattatcctttatcaaatgagctaagctcat 50815706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 302
Target Start/End: Original strand, 22341838 - 22341958
Alignment:
Q  182 gtcaagtaggttagtgattagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatccct 281  Q
    |||||||||  ||| | ||||| ||||||| ||| ||||| || |||| ||| |||| | ||  ||||||||||| || || |||||||||||||||  |    
T  22341838 gtcaagtagcctagcggttagagaaattcacctttaagatgaacaagtggggtgtttgggatttgaaccccaacccctacacatattgtgcattatcttt 22341937  T
Q  282 tatcaaatgagttaagctcat 302  Q
    || ||||||| ||||| ||||    
T  22341938 taccaaatgatttaagttcat 22341958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 300
Target Start/End: Original strand, 23233943 - 23234043
Alignment:
Q  200 tagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagct 299  Q
    ||||||||||||  || || || ||||||| ||| |||| || |  ||||| ||||| ||||| | ||||||||||||  ||||| ||||||||||||||    
T  23233943 tagaaaaattcacttttaatatgaataagtggggtgtttggagtttgaaccacaacccctgcacaaattgtgcattatttcttataaaatgagttaagct 23234042  T
Q  300 c 300  Q
    |    
T  23234043 c 23234043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 182 - 302
Target Start/End: Original strand, 25553122 - 25553241
Alignment:
Q  182 gtcaagtaggttagtgattagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatccct 281  Q
    ||||||||  |||||| ||||| ||||||||||||||||| ||||||| | |  | | || | |||||||||| ||||||| ||||||||||||||||||    
T  25553122 gtcaagtaatttagtggttagagaaattcatcttaaagatgaataagtggagtatct-gagttcgaaccccaatctctgcacatattgtgcattatccct 25553220  T
Q  282 tatcaaatgagttaagctcat 302  Q
    || ||||||| ||||||||||    
T  25553221 taccaaatgaattaagctcat 25553241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 182 - 303
Target Start/End: Original strand, 33065233 - 33065354
Alignment:
Q  182 gtcaagtaggttagtgattagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatccct 281  Q
    |||||||||  |||||  |||| ||||||| ||||||||| ||||||||||| |||  || | |||||||| ||| || || | ||||||||||||||||    
T  33065233 gtcaagtagcctagtggctagagaaattcaccttaaagatgaataagtagggtgttcggagttcgaaccccgacccctacacacattgtgcattatccct 33065332  T
Q  282 tatcaaatgagttaagctcatt 303  Q
    |  |||||||| ||||||||||    
T  33065333 tgccaaatgagctaagctcatt 33065354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 298
Target Start/End: Original strand, 3330177 - 3330293
Alignment:
Q  182 gtcaagtaggttagtgattagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatccct 281  Q
    ||||| ||| |||||| ||||| ||||||| ||||||||| ||||||| ||| ||   |  | ||||| || ||||||||| ||||||||||||||||||    
T  3330177 gtcaaatagcttagtggttagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaactccgacctctgcacatattgtgcattatccct 3330276  T
Q  282 tatcaaatgagttaagc 298  Q
    ||  |||||||||||||    
T  3330277 tactaaatgagttaagc 3330293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 258 - 299
Target Start/End: Complemental strand, 6866551 - 6866510
Alignment:
Q  258 ctgcatatattgtgcattatcccttatcaaatgagttaagct 299  Q
    ||||| |||||||||||||||||||| |||||||||||||||    
T  6866551 ctgcacatattgtgcattatcccttaccaaatgagttaagct 6866510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 11069384 - 11069441
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    |||||||||| | ||||| |||||||||||||| ||||| |||||||| |||||||||    
T  11069384 cgaaccccaaaccctgcacatattgtgcattattccttaccaaatgagctaagctcat 11069441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 18949723 - 18949780
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    |||||||| ||| ||||| ||||  |||||||||| ||||||||||||||||||||||    
T  18949723 cgaaccccgacccctgcacatataatgcattatccgttatcaaatgagttaagctcat 18949780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 16403568 - 16403524
Alignment:
Q  258 ctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||| |||||||||||||||||||| |||||||| |||||||||    
T  16403568 ctgcacatattgtgcattatcccttaccaaatgagctaagctcat 16403524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 302
Target Start/End: Original strand, 27463578 - 27463622
Alignment:
Q  258 ctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    |||||||||||||||||||| ||||| |||||||| |||||||||    
T  27463578 ctgcatatattgtgcattattccttaccaaatgagctaagctcat 27463622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 302
Target Start/End: Original strand, 31149090 - 31149197
Alignment:
Q  194 agtgattagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagt 293  Q
    |||| ||||| ||||||| ||||||||| || |||| ||| || | |  | |||||| ||||| ||||| |||||||||||||||||||| ||||||||     
T  31149090 agtggttagagaaattcaccttaaagattaaaaagtggggtgtctggggttcgaacctcaacc-ctgcacatattgtgcattatcccttaccaaatgagc 31149188  T
Q  294 taagctcat 302  Q
    || ||||||    
T  31149189 tatgctcat 31149197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 34107538 - 34107494
Alignment:
Q  258 ctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||| |||||||||||||||||||| |||||||| |||||||||    
T  34107538 ctgcacatattgtgcattatcccttaccaaatgagctaagctcat 34107494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 302
Target Start/End: Complemental strand, 43027190 - 43027154
Alignment:
Q  266 attgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||||||||||||||||||||||||| |||||||||    
T  43027190 attgtgcattatcccttatcaaatgagctaagctcat 43027154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 302
Target Start/End: Original strand, 19843357 - 19843459
Alignment:
Q  200 tagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagct 299  Q
    |||| ||||||| ||||||||| |||||||  || || |||  | |||||||  ||| ||||| ||||||| ||| ||||||||  ||||||||||||||    
T  19843357 tagagaaattcaccttaaagatgaataagtgaggtgtctagggttcgaaccctgacccctgcacatattgtacatcatcccttacgaaatgagttaagct 19843456  T
Q  300 cat 302  Q
    |||    
T  19843457 cat 19843459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 299
Target Start/End: Original strand, 19733045 - 19733162
Alignment:
Q  182 gtcaagtaggttagtgattagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatccct 281  Q
    ||||||||| |||||| ||||| ||||||| ||||||||| ||||| |  || |||  | || |||||||| ||| ||||||||||| ||||||||||||    
T  19733045 gtcaagtagcttagtggttagagaaattcaccttaaagatgaataatttaggtgttcgggattcgaaccccgacccctgcatatattatgcattatccct 19733144  T
Q  282 tatcaaatgagttaagct 299  Q
    || |||||||| ||||||    
T  19733145 taccaaatgagctaagct 19733162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 299
Target Start/End: Original strand, 38289211 - 38289328
Alignment:
Q  182 gtcaagtaggttagtgattagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatccct 281  Q
    ||||||||| ||||||  |||| ||||||| ||||||||| ||||||| ||| ||||    | |||||||| ||| ||||| ||||||||||||||||||    
T  38289211 gtcaagtagcttagtggctagagaaattcaccttaaagatgaataagtggggtgtttgaggttcgaaccccgacccctgcacatattgtgcattatccct 38289310  T
Q  282 tatcaaatgagttaagct 299  Q
    || |||||||| ||||||    
T  38289311 taccaaatgagctaagct 38289328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 302
Target Start/End: Complemental strand, 1032671 - 1032569
Alignment:
Q  200 tagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagct 299  Q
    |||| ||||||| ||||||||| ||||||| ||| || | |  | ||||||||| || ||||| |||||||||||||||||||| |||||||| ||||||    
T  1032671 tagagaaattcaccttaaagatgaataagtggggtgtctggggttcgaaccccagcccctgcacatattgtgcattatcccttaccaaatgagctaagct 1032572  T
Q  300 cat 302  Q
    |||    
T  1032571 cat 1032569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 302
Target Start/End: Original strand, 34037924 - 34038044
Alignment:
Q  182 gtcaagtaggttagtgattagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatccct 281  Q
    |||||||||  ||||| |||||||||||||  |||||||| ||||||| ||  || | | || ||||| ||  || ||||| |||||||| |||||||||    
T  34037924 gtcaagtagtctagtggttagaaaaattcactttaaagatgaataagtgggatgtctgggattcgaactccgccccctgcacatattgtgtattatccct 34038023  T
Q  282 tatcaaatgagttaagctcat 302  Q
    |||||||| ||||||||||||    
T  34038024 tatcaaataagttaagctcat 34038044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 306
Target Start/End: Original strand, 38544901 - 38545024
Alignment:
Q  182 gtcaagtaggttagtgattagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatccct 281  Q
    ||||||||| |||||| ||||| |||| || ||||||||||||||||| ||| |||  | || |||||||  | |  |||| ||||||||||||||||||    
T  38544901 gtcaagtagtttagtggttagagaaatccaccttaaagataaataagt-gggtgttcgggattcgaaccctgatccatgcacatattgtgcattatccct 38544999  T
Q  282 tatcaaatgagttaagctcattgag 306  Q
    || |||||||| ||||||| |||||    
T  38545000 taccaaatgaggtaagctcgttgag 38545024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 299
Target Start/End: Original strand, 8349459 - 8349576
Alignment:
Q  182 gtcaagtaggttagtgattagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatccct 281  Q
    |||||||||  ||||| ||||| ||||||||||||||||| ||||||| ||| |||  || | ||||| ||  || ||||||||||| || |||||| ||    
T  8349459 gtcaagtagtctagtggttagataaattcatcttaaagatgaataagtggggtgttcggagttcgaactccggcccctgcatatattctgtattatcact 8349558  T
Q  282 tatcaaatgagttaagct 299  Q
    || |||||||| ||||||    
T  8349559 taccaaatgagctaagct 8349576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 10162020 - 10161963
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    |||||||||||| ||||| |||||||||||||||||||| || ||||| |||||||||    
T  10162020 cgaaccccaacccctgcacatattgtgcattatcccttaccagatgagctaagctcat 10161963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 302
Target Start/End: Original strand, 36103929 - 36104018
Alignment:
Q  213 cttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||||||| ||||||| ||| |||| |  | ||||||||  || ||||| |||||||||||||||| ||| ||||||||||||||||||    
T  36103929 cttaaagatgaataagtggggtgtttggggttcgaaccccggcccctgcacatattgtgcattatcctttaccaaatgagttaagctcat 36104018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 302
Target Start/End: Original strand, 41845428 - 41845525
Alignment:
Q  205 aaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||||| ||||||||| ||||| ||||| |||  |  | |||||||| | | ||||| |||||||||||||||||||| |||||||| |||||||||    
T  41845428 aaattcaccttaaagatgaataaatagggtgttcggggttcgaaccccgatccctgcacatattgtgcattatcccttaccaaatgagctaagctcat 41845525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 283
Target Start/End: Original strand, 43413862 - 43413963
Alignment:
Q  182 gtcaagtaggttagtgattagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatccct 281  Q
    |||||||||  |||||  |||| ||||||| ||||||||| ||||||| ||| |||| | || ||||||||| || ||||| | ||||||||||||||||    
T  43413862 gtcaagtagcctagtggctagagaaattcaccttaaagatgaataagtggggtgtttgggattcgaaccccagcccctgcacaaattgtgcattatccct 43413961  T
Q  282 ta 283  Q
    ||    
T  43413962 ta 43413963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 4259902 - 4259858
Alignment:
Q  258 ctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||    
T  4259902 ctgcacatattgtgcattatcccttaccaaatgagttaagctcat 4259858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 40103578 - 40103522
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctca 301  Q
    |||||| || || |||| |||||||||||||||||||||||||||||| ||||||||    
T  40103578 cgaacctcagcccctgcttatattgtgcattatcccttatcaaatgagctaagctca 40103522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 13906665 - 13906722
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||||||  || ||||| |||||||||||||||||||| |||||||| |||||||||    
T  13906665 cgaaccccggcccctgcacatattgtgcattatcccttaccaaatgagctaagctcat 13906722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 30466735 - 30466678
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||||||| || ||||| ||||||||||||| |||||| |||||||| |||||||||    
T  30466735 cgaaccccagcccctgcacatattgtgcattagcccttaccaaatgagctaagctcat 30466678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 41454866 - 41454923
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||||||  || ||||| |||||||||||||||||||| |||||||| |||||||||    
T  41454866 cgaaccccggcccctgcacatattgtgcattatcccttaccaaatgagctaagctcat 41454923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 261 - 300
Target Start/End: Original strand, 43456707 - 43456746
Alignment:
Q  261 catatattgtgcattatcccttatcaaatgagttaagctc 300  Q
    ||||||||||||||||||||||| |||||||| |||||||    
T  43456707 catatattgtgcattatcccttaccaaatgagctaagctc 43456746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 302
Target Start/End: Complemental strand, 3311541 - 3311439
Alignment:
Q  200 tagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagct 299  Q
    |||||||||||||||| ||||| ||||||| ||| ||   |  | |||||||  | | ||||||| ||||| |||||||||||  |||||||||||||||    
T  3311541 tagaaaaattcatctttaagatgaataagtggggtgtccggggttcgaaccctgatccctgcataaattgtacattatcccttgccaaatgagttaagct 3311442  T
Q  300 cat 302  Q
    |||    
T  3311441 cat 3311439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 302
Target Start/End: Original strand, 11052646 - 11052680
Alignment:
Q  268 tgtgcattatcccttatcaaatgagttaagctcat 302  Q
    |||||||||||||||| ||||||||||||||||||    
T  11052646 tgtgcattatcccttaccaaatgagttaagctcat 11052680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 295
Target Start/End: Complemental strand, 16973078 - 16973028
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagtta 295  Q
    ||||| || ||| ||||| |||||||||||||||||||| |||||||||||    
T  16973078 cgaacaccgacccctgcacatattgtgcattatcccttaacaaatgagtta 16973028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 299
Target Start/End: Complemental strand, 8350479 - 8350438
Alignment:
Q  258 ctgcatatattgtgcattatcccttatcaaatgagttaagct 299  Q
    |||||||||||||| |||||| |||| |||||||||||||||    
T  8350479 ctgcatatattgtgtattatcacttaccaaatgagttaagct 8350438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 44828472 - 44828529
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    |||||||||  | ||||| | |||||||||||||||||| |||||||| |||||||||    
T  44828472 cgaaccccagaccctgcacaaattgtgcattatcccttaccaaatgagctaagctcat 44828529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 270 - 302
Target Start/End: Complemental strand, 22652714 - 22652682
Alignment:
Q  270 tgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||||||||||||||||||||| |||||||||    
T  22652714 tgcattatcccttatcaaatgagctaagctcat 22652682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 302
Target Start/End: Complemental strand, 23139109 - 23139073
Alignment:
Q  266 attgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  23139109 attgtgcattatcccttgtcaaatgagctaagctcat 23139073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 302
Target Start/End: Complemental strand, 29114137 - 29114101
Alignment:
Q  266 attgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  29114137 attgtgcattatcccttatcaaatgagctaagttcat 29114101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 270 - 302
Target Start/End: Complemental strand, 32822147 - 32822115
Alignment:
Q  270 tgcattatcccttatcaaatgagttaagctcat 302  Q
    |||||||||||||| ||||||||||||||||||    
T  32822147 tgcattatcccttaccaaatgagttaagctcat 32822115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 302
Target Start/End: Complemental strand, 38064012 - 38063976
Alignment:
Q  266 attgtgcattatcccttatcaaatgagttaagctcat 302  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  38064012 attgtgcattatcccttaccaaatgaattaagctcat 38063976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 39104663 - 39104607
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctca 301  Q
    ||||||||  || ||||| |||||||||||||||||||| |||||||| ||| ||||    
T  39104663 cgaaccccggccgctgcacatattgtgcattatcccttaccaaatgagctaaactca 39104607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 205 - 302
Target Start/End: Original strand, 33248801 - 33248898
Alignment:
Q  205 aaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||||| ||||||||| ||||||||||| ||   |  | |||||||| ||||||||||||||||||||| |||||||| |||||||| |||||||||    
T  33248801 aaattcaccttaaagatgaataagtagggtgtccggggttcgaaccccgacctctgcatatattgtgcatcatcccttaccaaatgagctaagctcat 33248898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 289
Target Start/End: Complemental strand, 43440790 - 43440701
Alignment:
Q  200 tagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatcccttatcaaat 289  Q
    |||| ||||||| ||||||||| ||||||| ||| || | |||| |||||||| ||||||||| |||||||||||||||||||| |||||    
T  43440790 tagagaaattcaccttaaagatgaataagtggggtgtctggaattcgaaccccgacctctgcacatattgtgcattatcccttaccaaat 43440701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 42554690 - 42554633
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    |||||||||||| ||||| |||||||||||||||||||| |||||||| |||||||||    
T  42554690 cgaaccccaacccctgcacatattgtgcattatcccttaccaaatgagctaagctcat 42554633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 1575750 - 1575693
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    |||||||||||| ||| | |||||||| ||||||||||| ||||||||||||||||||    
T  1575750 cgaaccccaacccctgtacatattgtgtattatcccttaccaaatgagttaagctcat 1575693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 31793524 - 31793467
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    |||||||| ||| ||||| |||||||||||||||||||| |||||||| |||||||||    
T  31793524 cgaaccccgacccctgcacatattgtgcattatcccttaacaaatgagctaagctcat 31793467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 302
Target Start/End: Complemental strand, 12166201 - 12166081
Alignment:
Q  182 gtcaagtaggttagtgattagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatccct 281  Q
    ||||||||| |||||   |||| ||||||| ||||||||| ||||||| ||| || | |  | ||||||||| || ||||| | ||||||||||||||||    
T  12166201 gtcaagtagtttagtagctagagaaattcaccttaaagatgaataagtggggtgtctggggttcgaaccccagcccctgcacaaattgtgcattatccct 12166102  T
Q  282 tatcaaatgagttaagctcat 302  Q
    || |||||||| |||| ||||    
T  12166101 taccaaatgagctaagttcat 12166081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 288
Target Start/End: Original strand, 4956068 - 4956174
Alignment:
Q  182 gtcaagtaggttagtgattagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatccct 281  Q
    |||||||||  |||||  |||| ||||||| ||||||||| ||||||| ||| ||  ||  | |||||||| ||| ||||| ||||||||||||||||||    
T  4956068 gtcaagtagcctagtggctagagaaattcaccttaaagatgaataagtggggtgtccagggttcgaaccccgacccctgcacatattgtgcattatccct 4956167  T
Q  282 tatcaaa 288  Q
    || ||||    
T  4956168 taccaaa 4956174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 302
Target Start/End: Original strand, 36528277 - 36528315
Alignment:
Q  264 atattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  36528277 atattgtgcattatcccttaccaaatgagttaagctcat 36528315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 302
Target Start/End: Complemental strand, 40273922 - 40273820
Alignment:
Q  200 tagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagct 299  Q
    |||| ||||||| ||||||||| ||||||| ||| ||   |  | ||||||||  || ||||| |||||||||||||||||||| |||||||| ||||||    
T  40273922 tagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggcccctgcacatattgtgcattatcccttaccaaatgagctaagct 40273823  T
Q  300 cat 302  Q
    |||    
T  40273822 cat 40273820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 302
Target Start/End: Original strand, 3889853 - 3889897
Alignment:
Q  258 ctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||||||||||| ||||||||||| ||||||||| |||||||||    
T  3889853 ctgcatatattgtacattatcccttgtcaaatgagctaagctcat 3889897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 302
Target Start/End: Complemental strand, 46266703 - 46266667
Alignment:
Q  266 attgtgcattatcccttatcaaatgagttaagctcat 302  Q
    |||||||||||||||||| ||||||||||||||||||    
T  46266703 attgtgcattatcccttaccaaatgagttaagctcat 46266667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 302
Target Start/End: Original strand, 48433762 - 48433806
Alignment:
Q  258 ctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||| |||||||||||||||||||| |||||||| |||||||||    
T  48433762 ctgcacatattgtgcattatcccttaccaaatgagctaagctcat 48433806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 302
Target Start/End: Original strand, 23824644 - 23824687
Alignment:
Q  259 tgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    |||| |||||||||||||||||||| |||||||| |||||||||    
T  23824644 tgcacatattgtgcattatcccttaccaaatgagctaagctcat 23824687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 267 - 302
Target Start/End: Complemental strand, 37918714 - 37918679
Alignment:
Q  267 ttgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||||||||||||||||||||||||||||| ||||    
T  37918714 ttgtgcattatcccttatcaaatgagttaagttcat 37918679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 302
Target Start/End: Complemental strand, 24030022 - 24029984
Alignment:
Q  264 atattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  24030022 atattgtgcattatcccttatcaaatgagctaaactcat 24029984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 292
Target Start/End: Original strand, 34322076 - 34322110
Alignment:
Q  258 ctgcatatattgtgcattatcccttatcaaatgag 292  Q
    ||||| |||||||||||||||||||||||||||||    
T  34322076 ctgcacatattgtgcattatcccttatcaaatgag 34322110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 302
Target Start/End: Complemental strand, 48619913 - 48619796
Alignment:
Q  184 caagtaggttagtgattagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatccctta 283  Q
    ||||||| ||||||  |||| ||||||| ||||||||| ||||||| | | || |  | | ||||||| |||| ||||| ||||||| |||||||| |||    
T  48619913 caagtagcttagtggctagagaaattcaccttaaagatgaataagtggagtgtctgaagttcgaaccc-aacccctgcacatattgtacattatccttta 48619815  T
Q  284 tcaaatgagttaagctcat 302  Q
     |||||||||||| |||||    
T  48619814 ccaaatgagttaaactcat 48619796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 8249761 - 8249704
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    |||||||| ||| ||||||||||| |||||||||| ||| ||| |||| |||||||||    
T  8249761 cgaaccccgacccctgcatatattatgcattatcctttaccaagtgagctaagctcat 8249704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 14707348 - 14707292
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    |||||||||||| |||||||||   |||||||||||||| |||||||| |||||||||    
T  14707348 cgaaccccaacccctgcatataaa-tgcattatcccttaccaaatgagctaagctcat 14707292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 27454067 - 27454010
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    |||||| | ||| ||||| | |||||||||||||||||| |||||||| |||||||||    
T  27454067 cgaacctcgacccctgcacaaattgtgcattatcccttaccaaatgagctaagctcat 27454010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 42338286 - 42338343
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||||||  || ||||| |||||||||||||| ||||| |||||||| |||||||||    
T  42338286 cgaaccccgtcccctgcacatattgtgcattattccttaccaaatgagctaagctcat 42338343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 9992666 - 9992610
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctca 301  Q
    |||||||| | |||| |||| ||  ||||||||||||||||||||||| ||||||||    
T  9992666 cgaaccccgatctctacatacataatgcattatcccttatcaaatgagctaagctca 9992610  T

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Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 270 - 302
Target Start/End: Complemental strand, 15025187 - 15025155
Alignment:
Q  270 tgcattatcccttatcaaatgagttaagctcat 302  Q
    |||||||||||||| ||||||||||||||||||    
T  15025187 tgcattatcccttaccaaatgagttaagctcat 15025155  T

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Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 302
Target Start/End: Original strand, 26456057 - 26456101
Alignment:
Q  258 ctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||| |||||||||||| ||||||| |||||||| |||||||||    
T  26456057 ctgcacatattgtgcattgtcccttaccaaatgagctaagctcat 26456101  T

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Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 28712411 - 28712367
Alignment:
Q  258 ctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||| ||||| | |||||||||||| ||||||||||||||||||    
T  28712411 ctgcacatattatacattatcccttaccaaatgagttaagctcat 28712367  T

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Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 302
Target Start/End: Complemental strand, 44986629 - 44986593
Alignment:
Q  266 attgtgcattatcccttatcaaatgagttaagctcat 302  Q
    |||||||||||||||||| |||||||| |||||||||    
T  44986629 attgtgcattatcccttaccaaatgagctaagctcat 44986593  T

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Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 45421377 - 45421341
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatccct 281  Q
    |||||||||||||||||||||||| |||| |||||||    
T  45421377 cgaaccccaacctctgcatatattatgcaatatccct 45421341  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 299
Target Start/End: Original strand, 15106864 - 15106980
Alignment:
Q  183 tcaagtaggttagtgattagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatccctt 282  Q
    |||||||| |||||| ||||| ||||| || |||||||| ||||||| ||| ||   |  | |||||||| ||||||||| | |||||||||||||||||    
T  15106864 tcaagtagtttagtggttagagaaatttattttaaagatgaataagtggggtgtccggggttcgaaccccgacctctgcacaaattgtgcattatccctt 15106963  T
Q  283 atcaaatgagttaagct 299  Q
    | ||||| |||||||||    
T  15106964 accaaataagttaagct 15106980  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 302
Target Start/End: Complemental strand, 87833 - 87790
Alignment:
Q  259 tgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||||||||||||||||||||||| |||||||||| |||||||    
T  87833 tgcatatattgtgcattatcccttaccaaatgagttgagctcat 87790  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 302
Target Start/End: Complemental strand, 31250248 - 31250146
Alignment:
Q  200 tagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagct 299  Q
    |||| ||||||| ||||||||| ||||||| ||| ||   |  | ||||||||  || ||||| |||||||||||||||||||| |||||||| ||||||    
T  31250248 tagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggcccctgcacatattgtgcattatcccttaccaaatgagctaagct 31250149  T
Q  300 cat 302  Q
    |||    
T  31250148 cat 31250146  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 302
Target Start/End: Original strand, 38503251 - 38503353
Alignment:
Q  200 tagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagct 299  Q
    |||| ||||||| ||||||||| ||||||| ||| ||   |  | ||||||||  || ||||| |||||||||||||||||||| |||||||| ||||||    
T  38503251 tagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggcccctgcacatattgtgcattatcccttaccaaatgagctaagct 38503350  T
Q  300 cat 302  Q
    |||    
T  38503351 cat 38503353  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 302
Target Start/End: Complemental strand, 43227967 - 43227865
Alignment:
Q  200 tagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagct 299  Q
    |||| ||||||| ||||||||| ||||||| ||| ||   |  | ||||||||  || ||||| |||||||||||||||||||| |||||||| ||||||    
T  43227967 tagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggcccctgcacatattgtgcattatcccttaccaaatgagctaagct 43227868  T
Q  300 cat 302  Q
    |||    
T  43227867 cat 43227865  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 265 - 302
Target Start/End: Complemental strand, 13576359 - 13576322
Alignment:
Q  265 tattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  13576359 tattgtgcattatcccttaccaaatgagttaagctcat 13576322  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 302
Target Start/End: Original strand, 930914 - 931034
Alignment:
Q  182 gtcaagtaggttagtgattagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatccct 281  Q
    ||||||||| ||||||| |||| ||||||| ||| ||||| ||||||| ||  || |    | |||||||||||| ||||| |||||||||||| |||||    
T  930914 gtcaagtagtttagtgactagagaaattcacctttaagatgaataagtgggatgtctgaggttcgaaccccaacccctgcacatattgtgcattgtccct 931013  T
Q  282 tatcaaatgagttaagctcat 302  Q
    || | |||||| || ||||||    
T  931014 taccgaatgagctatgctcat 931034  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 302
Target Start/End: Original strand, 1984249 - 1984285
Alignment:
Q  266 attgtgcattatcccttatcaaatgagttaagctcat 302  Q
    |||||||||||||||||| ||||||||||||||||||    
T  1984249 attgtgcattatcccttaccaaatgagttaagctcat 1984285  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 302
Target Start/End: Original strand, 15470597 - 15470717
Alignment:
Q  182 gtcaagtaggttagtgattagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatccct 281  Q
    ||||||||| ||||||  |||| ||||||| ||||||||| ||||| | ||| || | |  | |||| | || ||  |||| ||||||||||||||||||    
T  15470597 gtcaagtagtttagtggctagagaaattcaccttaaagatgaataaatggggtgtctggggttcgaatctcagcccttgcacatattgtgcattatccct 15470696  T
Q  282 tatcaaatgagttaagctcat 302  Q
    || ||||||| ||||||||||    
T  15470697 taccaaatgaattaagctcat 15470717  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 261 - 300
Target Start/End: Original strand, 7608118 - 7608157
Alignment:
Q  261 catatattgtgcattatcccttatcaaatgagttaagctc 300  Q
    |||| |||||||||||||| ||||||||||||||||||||    
T  7608118 cataaattgtgcattatcctttatcaaatgagttaagctc 7608157  T

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Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 301
Target Start/End: Complemental strand, 9628160 - 9628117
Alignment:
Q  258 ctgcatatattgtgcattatcccttatcaaatgagttaagctca 301  Q
    ||||||||||| ||||||||| |||| |||||||||||||||||    
T  9628160 ctgcatatattatgcattatctcttaccaaatgagttaagctca 9628117  T

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Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 304
Target Start/End: Complemental strand, 17077417 - 17077358
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcattg 304  Q
    |||| ||| ||| ||||| | |||||||||||||||||| |||||||| |||||||||||    
T  17077417 cgaatcccgacccctgcacaaattgtgcattatcccttaccaaatgagctaagctcattg 17077358  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 302
Target Start/End: Complemental strand, 15696244 - 15696206
Alignment:
Q  264 atattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  15696244 atattgtgcattatcccttatcaaatgagctaaactcat 15696206  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 12375451 - 12375508
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||||||  || ||||| |||||||||||||||| ||| |||||||| |||||||||    
T  12375451 cgaaccccggcccctgcacatattgtgcattatccattaccaaatgagctaagctcat 12375508  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 302
Target Start/End: Original strand, 15254210 - 15254251
Alignment:
Q  261 catatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    |||||||||||||||||| |||| |||||||| |||||||||    
T  15254210 catatattgtgcattatctcttaacaaatgagctaagctcat 15254251  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 31991800 - 31991856
Alignment:
Q  245 cgaaccccaacctctgcatatattgtgcattatcccttatcaaatgagttaagctca 301  Q
    |||||||| ||| ||||||||||  |||||||||||||| ||| |||| ||||||||    
T  31991800 cgaaccccgacccctgcatatataatgcattatcccttaccaagtgagctaagctca 31991856  T

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Target: scaffold0204 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 301
Target Start/End: Complemental strand, 10612 - 10576
Alignment:
Q  265 tattgtgcattatcccttatcaaatgagttaagctca 301  Q
    |||||||||||||||||||||||||||| ||||||||    
T  10612 tattgtgcattatcccttatcaaatgagctaagctca 10576  T

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Target: scaffold0001 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 302
Target Start/End: Complemental strand, 419831 - 419711
Alignment:
Q  182 gtcaagtaggttagtgattagaaaaattcatcttaaagataaataagtagggcgtttagaatccgaaccccaacctctgcatatattgtgcattatccct 281  Q
    |||||||||  |||||  |||| ||||||| ||||||||| ||||||| ||| ||   |  | ||||||||  || ||||| ||||||| ||||||||||    
T  419831 gtcaagtagcctagtggctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggcccctgcacatattgttcattatccct 419732  T
Q  282 tatcaaatgagttaagctcat 302  Q
    || |||||||| |||||||||    
T  419731 taccaaatgagctaagctcat 419711  T

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Target: scaffold0018 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 302
Target Start/End: Original strand, 121851 - 121895
Alignment:
Q  258 ctgcatatattgtgcattatcccttatcaaatgagttaagctcat 302  Q
    ||||| ||||||||||||||||| || |||||||| |||||||||    
T  121851 ctgcacatattgtgcattatcccctaccaaatgagctaagctcat 121895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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