View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11436_high_50 (Length: 254)
Name: NF11436_high_50
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11436_high_50 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0002 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 438589 - 438354
Alignment:
| Q |
1 |
tggttgctcccgtcatcaatgccatatacaagcccagaaagagatttgagaataataagctaaagactgtacaaaagctcagacttgatgcagagcttag |
100 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
438589 |
tggtggctcctgtcatcaatgccatatacaagcccagaaagagatttgagaataataagctaaagactatacaaaagcttagacttgatgcagagcttag |
438490 |
T |
|
| Q |
101 |
gattctagcatgtgttcacaatactcgtcaggccgcaggggttattagcctcattgaatatttcaatgccactagaatttcccctatacatgtttttggc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
438489 |
gattctagcatgtgttcacaatactcgtcaggccgtaggagttattagcctcattgaatatttcaatgccactagaatttcccctatacatgtttttggc |
438390 |
T |
|
| Q |
201 |
ctttaccttgttgaaatcgttggacgtgttggtgcc |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
438389 |
ctttaccttgttgaaatcgttggacgtgttggtgcc |
438354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 28608315 - 28608549
Alignment:
| Q |
1 |
tggttgctcccgtcatcaatgccatatacaagcccagaaagagatttgagaataataagctaaagactgtacaaaagctcagacttgatgcagagcttag |
100 |
Q |
| |
|
|||| |||||| |||| |||| |||||||||||||| |||||||| |||| | || |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28608315 |
tggtagctcccatcataaatgtcatatacaagcccaaaaagagatatgagcaaaacaagctaaagactatacaaaagctcagacttgatgcagagcttag |
28608414 |
T |
|
| Q |
101 |
gattctagcatgtgttcacaatactcgtcaggccgcaggggttattagcctcattgaatatttcaatgccactagaatttcccctatacatgtttttggc |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||| || | ||||||||||||||||||||||| |||||||||||||||| |||||||||| ||| |||||| |
|
|
| T |
28608415 |
gattctagcatgtgttcataatactcgtcaagctgtaggggttattagcctcattgaatctttcaatgccactagactttcccctatgcatatttttgca |
28608514 |
T |
|
| Q |
201 |
ctttaccttgttgaaatcgttggacgtgttggtgc |
235 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||| |
|
|
| T |
28608515 |
ctttaccttgttgaactcgttggacgtgatggtgc |
28608549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 15 - 215
Target Start/End: Original strand, 13659700 - 13659900
Alignment:
| Q |
15 |
atcaatgccatatacaagcccagaaagagatttgagaataataagctaaagactgtacaaaagctcagacttgatgcagagcttaggattctagcatgtg |
114 |
Q |
| |
|
||||||| |||||| ||||| ||||||||||||||| | || |||||||||||| |||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
13659700 |
atcaatgtcatatataagccgagaaagagatttgagcagaacaagctaaagactatacaaaagcttagacttgatgcagagcttaggattcttacatgtg |
13659799 |
T |
|
| Q |
115 |
ttcacaatactcgtcaggccgcaggggttattagcctcattgaatatttcaatgccactagaatttcccctatacatgtttttggcctttaccttgttga |
214 |
Q |
| |
|
|||| ||| |||| ||||| |||||||||| |||||| |||||| ||||||||| |||||||||||||||||||||||||| | ||||||||| |||| |
|
|
| T |
13659800 |
ttcataatgctcgccaggctacaggggttatcagcctcgttgaatctttcaatgctactagaatttcccctatacatgttttcgcactttaccttattga |
13659899 |
T |
|
| Q |
215 |
a |
215 |
Q |
| |
|
| |
|
|
| T |
13659900 |
a |
13659900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 13652186 - 13652400
Alignment:
| Q |
1 |
tggttgctcccgtcatcaatgccatatacaagcccagaaagagatttgagaataataagctaaagactgtacaaaagctcagacttgatgcagagcttag |
100 |
Q |
| |
|
||||| ||| ||| || ||||| ||||| |||||||| |||||||||||| | || |||||||||||| |||||||||| |||||||||||||| ||||| |
|
|
| T |
13652186 |
tggttcctctcgttattaatgcgatatataagcccaggaagagatttgagcagaacaagctaaagactatacaaaagcttagacttgatgcagaacttag |
13652285 |
T |
|
| Q |
101 |
gattctagcatgtgttcacaatactcgtcaggccgcaggggttattagcctcattgaatatttcaatgccactagaatttcccctatacatgtttttggc |
200 |
Q |
| |
|
||||||| ||||||||||||||||||| || || ||||||||| | ||||||| | | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13652286 |
gattctaacatgtgttcacaatactcgccacgctataggggttatcaacctcattcagtctttcaatgccactagaatttcccctatacatgttttttca |
13652385 |
T |
|
| Q |
201 |
ctttaccttgttgaa |
215 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
13652386 |
ctttaccttattgaa |
13652400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University