View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11436_high_52 (Length: 251)

Name: NF11436_high_52
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11436_high_52
NF11436_high_52
[»] chr7 (6 HSPs)
chr7 (1-169)||(4866359-4866527)
chr7 (164-241)||(4873721-4873798)
chr7 (143-242)||(1751556-1751654)
chr7 (1-83)||(9046585-9046678)
chr7 (157-229)||(6531857-6531930)
chr7 (1-39)||(35103696-35103734)
[»] chr3 (1 HSPs)
chr3 (48-164)||(6461913-6462029)
[»] chr4 (3 HSPs)
chr4 (53-237)||(36709132-36709316)
chr4 (143-242)||(17465491-17465588)
chr4 (183-237)||(17295124-17295178)
[»] chr1 (4 HSPs)
chr1 (137-242)||(3362971-3363075)
chr1 (143-239)||(7839907-7840003)
chr1 (1-39)||(28553772-28553810)
chr1 (43-91)||(898463-898511)
[»] chr2 (3 HSPs)
chr2 (147-239)||(21515758-21515848)
chr2 (61-202)||(35406946-35407088)
chr2 (182-242)||(21511341-21511401)
[»] chr5 (2 HSPs)
chr5 (143-238)||(4237280-4237376)
chr5 (189-229)||(19222611-19222651)


Alignment Details
Target: chr7 (Bit Score: 161; Significance: 6e-86; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 4866359 - 4866527
Alignment:
Q  1 attgagatacactcatgtattctgaaagaaaacatgaaaatattgtgtttagaaatgaatttaacataagatagagatatagacttggaattgttagtat 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4866359 attgagatacactcatgtattctgaaagaaaacatgagaatattgtgtttagaaatgaatttaacataagatagagatatagacttggaattgttagtat 4866458  T
Q  101 ttatcgttaagatctaacaacaatcctaaggcttctttataaaatctgaatttaaacaaagaaactatt 169  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4866459 ttatcgttaagatctaacaacaatcctaaggctactttataaaatctgaatttaaacaaagaaactatt 4866527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 164 - 241
Target Start/End: Original strand, 4873721 - 4873798
Alignment:
Q  164 actattgaacttttaatacttaatcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactctctgt 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4873721 actattgaacttttaatacttaatcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactctctgt 4873798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 143 - 242
Target Start/End: Original strand, 1751556 - 1751654
Alignment:
Q  143 aatctgaatttaaacaaagaaactattgaacttttaatacttaatcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactctctgtg 242  Q
    ||||||||||| ||| |||||||||||  |||| ||| |||| |||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||    
T  1751556 aatctgaattttaaccaagaaactattcgacttctaa-acttgatcttttctgctaatcaacattgaaaacgaaatcggtaattacaataactctctgtg 1751654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 9046585 - 9046678
Alignment:
Q  1 attgagatacactcatgtattctgaaagaaaacatgaaa-----------atattgtgtttagaaatgaatttaacataagatagagatataga 83  Q
    ||||||||||| |||||||||||||||| ||||||||||           ||||||| |||||||| ||||||||||||| |||||||||||||    
T  9046585 attgagatacattcatgtattctgaaaggaaacatgaaatgcaaaagagaatattgtctttagaaacgaatttaacataaaatagagatataga 9046678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 6531857 - 6531930
Alignment:
Q  157 caaagaaactattgaactt-ttaatacttaatcttttcagctaatcatcattgaaaacgaaatctgtaattaca 229  Q
    ||||||||||||||||||| |||||  | |||| |||||||||||||| ||||||||  ||||| |||||||||    
T  6531857 caaagaaactattgaacttcttaatcttaaatcatttcagctaatcataattgaaaagaaaatcggtaattaca 6531930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 35103734 - 35103696
Alignment:
Q  1 attgagatacactcatgtattctgaaagaaaacatgaaa 39  Q
    ||||| ||||| |||||||||||||||||||||||||||    
T  35103734 attgaaatacattcatgtattctgaaagaaaacatgaaa 35103696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 48 - 164
Target Start/End: Original strand, 6461913 - 6462029
Alignment:
Q  48 tttagaaatgaatttaacataagatagagatatagacttggaattgttagtatttatcgttaagatctaacaacaatcctaaggcttctttataaaatct 147  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| || ||||||||| |  ||| ||||||| ||||||||||| |    
T  6461913 tttagaaatgaatttaatataagatagagatatagacttggaactgttagtatttatcattcagatctaaccaatatcttaaggctcctttataaaattt 6462012  T
Q  148 gaatttaaacaaagaaa 164  Q
     ||||||||| ||||||    
T  6462013 taatttaaaccaagaaa 6462029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 53 - 237
Target Start/End: Complemental strand, 36709316 - 36709132
Alignment:
Q  53 aaatgaatttaacataagatagagatatagacttggaattgtt-agtatttatcgttaagatctaacaacaatcctaaggcttctttataaaatctgaat 151  Q
    ||||||||||||||||  |||  || ||||||  ||||||||| ||| ||| || ||||||| | || ||||||||||| | | ||||||  || |||||    
T  36709316 aaatgaatttaacatagaataaggaaatagacaaggaattgtttagtttttgtcattaagatttgaccacaatcctaagacctttttatattatatgaat 36709217  T
Q  152 ttaaacaaagaaactattgaacttttaatacttaatcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactct 237  Q
    |||||| || ||| | ||||||||| |||||||||||||||||| |||| | |||||||||||||||   ||||||||||||||||    
T  36709216 ttaaaccaa-aaattgttgaactttgaatacttaatcttttcagataattaacattgaaaacgaaattgataattacaataactct 36709132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 242
Target Start/End: Original strand, 17465491 - 17465588
Alignment:
Q  143 aatctgaatttaaacaaagaaactattgaacttttaatacttaatcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactctctgtg 242  Q
    |||||||| |||||| |||||   |||||| | ||||| |||||||||||||||||||||||| ||||||| | ||| ||||||||  ||||||||||||    
T  17465491 aatctgaaattaaactaagaac--attgaaatcttaatccttaatcttttcagctaatcatcactgaaaacaagatcggtaattactttaactctctgtg 17465588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 17295178 - 17295124
Alignment:
Q  183 ttaatcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactct 237  Q
    |||||| |||||||||||||| |||||||| |||||| |||| ||||||||||||    
T  17295178 ttaatcatttcagctaatcataattgaaaaagaaatcggtaagtacaataactct 17295124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 3363075 - 3362971
Alignment:
Q  137 ttataaaatctgaatttaaacaaagaaactattgaacttttaatacttaatcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactc 236  Q
    ||||| ||||||||||||||| || ||||| |||||  |  ||| |||||||||||||||||||||  ||||||||||||||| ||||||||||||||||    
T  3363075 ttatataatctgaatttaaaccaa-aaactgttgaaactcgaatgcttaatcttttcagctaatcacaattgaaaacgaaatcggtaattacaataactc 3362977  T
Q  237 tctgtg 242  Q
    ||||||    
T  3362976 tctgtg 3362971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 239
Target Start/End: Original strand, 7839907 - 7840003
Alignment:
Q  143 aatctgaatttaaacaaagaaactattgaacttttaatactt-aatcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactctct 239  Q
    ||||| |||||  ||||||||||||||  |||| ||| |||| || ||||||| ||||||| ||||||||||||||||  ||||||||||||||||||    
T  7839907 aatctaaattttgacaaagaaactattcgacttctaa-acttgaaccttttcaactaatcaacattgaaaacgaaatcgataattacaataactctct 7840003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 28553772 - 28553810
Alignment:
Q  1 attgagatacactcatgtattctgaaagaaaacatgaaa 39  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  28553772 attgagatacattcatgtattctgaaagaaaacatgaaa 28553810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 898463 - 898511
Alignment:
Q  43 ttgtgtttagaaatgaatttaacataagatagagatatagacttggaat 91  Q
    |||| |||||||| ||||||||| ||| ||||||| |||||||||||||    
T  898463 ttgtctttagaaaagaatttaacttaaaatagagaaatagacttggaat 898511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 21515848 - 21515758
Alignment:
Q  147 tgaatttaaacaaagaaactattgaacttttaatacttaatcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactctct 239  Q
    ||||||||||| |||||   |||||||| ||||| ||||||||||||||||||||||||||||||||   ||| ||||||||  |||||||||    
T  21515848 tgaatttaaaccaagaac--attgaactcttaatccttaatcttttcagctaatcatcattgaaaacatgatcagtaattactttaactctct 21515758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 202
Target Start/End: Original strand, 35406946 - 35407088
Alignment:
Q  61 ttaacataagatagagatatagacttggaattgtt-agtatttatcgttaagatctaacaacaatcctaaggcttctttataaaatctgaattt-aaaca 158  Q
    ||||||||| |||||||||||||   ||||||||| ||||||| || |||  ||   || ||||||||||| | ||||||||| |||||||||| ||||     
T  35406946 ttaacataaaatagagatatagatagggaattgtttagtatttgtcattacaattagaccacaatcctaagacctctttataatatctgaatttaaaacc 35407045  T
Q  159 aagaaactattgaacttttaatacttaatcttttcagctaatca 202  Q
    || |||| ||||||||| ||| |||| |||||||||||||||||    
T  35407046 aacaaaccattgaacttataa-acttgatcttttcagctaatca 35407088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 21511401 - 21511341
Alignment:
Q  182 cttaatcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactctctgtg 242  Q
    |||||||||||||||||| ||||||||||||| | ||| ||||||||  ||||||| ||||    
T  21511401 cttaatcttttcagctaagcatcattgaaaacaagatcggtaattactttaactctatgtg 21511341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 238
Target Start/End: Original strand, 4237280 - 4237376
Alignment:
Q  143 aatctgaatttaaacaaagaaacta-ttgaacttttaatacttaatcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactctc 238  Q
    ||||||||||| ||| |||||| |  ||||||||  |||||||||| |||||| ||||| | ||||| |||||||||| ||||||||||||||||||    
T  4237280 aatctgaattttaaccaagaaaattgttgaacttcgaatacttaatattttcaactaattaacattggaaacgaaatcggtaattacaataactctc 4237376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 19222611 - 19222651
Alignment:
Q  189 ttttcagctaatcatcattgaaaacgaaatctgtaattaca 229  Q
    ||||||||||||||| |||||||| |||||| |||||||||    
T  19222611 ttttcagctaatcataattgaaaaggaaatcggtaattaca 19222651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University