View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11436_high_53 (Length: 247)
Name: NF11436_high_53
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11436_high_53 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 3890791 - 3891026
Alignment:
| Q |
1 |
gatatcatcacataacattgaactttaatttgagcaattaagtgagtttatctaaaagattcggacaataggcatacaagttctctcatttacatattaa |
100 |
Q |
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| T |
3890791 |
gatatcatcacataacattgaactttaatttgagcaattaagtgagtttatctaaaagattcagacaataggcatacaagtcctctcatttacatattaa |
3890890 |
T |
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| Q |
101 |
catttatttttccatgtaatataggatttttattcgtatttgatataccaacaatttttctctcaagtgtaagtccatttattcatctaggtatattttc |
200 |
Q |
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| T |
3890891 |
catttatttttccatgtaatgtaggatttttattcgtatttgatataccaacaatttttctctcaagcgtaagtccatttattcatctaggtatattttc |
3890990 |
T |
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| Q |
201 |
tctcaagcaaaagcttttcatttgcatatacttgcc |
236 |
Q |
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| T |
3890991 |
tctcaagcaaaagcttttcatttgcatacacttgcc |
3891026 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 203
Target Start/End: Original strand, 22489034 - 22489087
Alignment:
| Q |
150 |
aacaatttttctctcaagtgtaagtccatttattcatctaggtatattttctct |
203 |
Q |
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| T |
22489034 |
aacaacttttccctcaagtgtgagtccatctatccatctagatatattttctct |
22489087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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