View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11436_high_66 (Length: 202)
Name: NF11436_high_66
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11436_high_66 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 133; Significance: 2e-69; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 41676319 - 41676496
Alignment:
| Q |
19 |
agggggtaaggattatgctatgnnnnnnntcaggtaaatgggaacatctaagcaagtgtttgggttaccttgagacatacctgcttgaagaattctctct |
118 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41676319 |
agggggtaaggattctgctatgaaaaaaatcaggtaaatggggacatctaagcaagtgtttgggttaccttgagacatacctgcttaaagaattctctct |
41676418 |
T |
|
| Q |
119 |
cattgcaatttaagagatgaaaattcactggactctactgtcacatgagacaatcatctctcattttggtctctgctt |
196 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41676419 |
cattgcaatttaagggatggaaattcactggactctactgtcacatgagacaatcatctctcattttagtctctgctt |
41676496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 111 - 178
Target Start/End: Complemental strand, 13366570 - 13366503
Alignment:
| Q |
111 |
ttctctctcattgcaatttaagagatgaaaattcactggactctactgtcacatgagacaatcatctc |
178 |
Q |
| |
|
|||||||||||||||| | |||||||| |||||||||| |||||| ||||||||||||||||| |||| |
|
|
| T |
13366570 |
ttctctctcattgcaaatcaagagatggaaattcactgaactctaatgtcacatgagacaatcctctc |
13366503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 173
Target Start/End: Original strand, 38071372 - 38071434
Alignment:
| Q |
111 |
ttctctctcattgcaatttaagagatgaaaattcactggactctactgtcacatgagacaatc |
173 |
Q |
| |
|
|||||||||||||||| | ||| |||| ||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
38071372 |
ttctctctcattgcaaatcaagggatggaaattcactcgactctaatgtcacatgagacaatc |
38071434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 44544942 - 44544983
Alignment:
| Q |
111 |
ttctctctcattgcaatttaagagatgaaaattcactggact |
152 |
Q |
| |
|
|||||||||||||||| | |||||||| |||||||||||||| |
|
|
| T |
44544942 |
ttctctctcattgcaaatcaagagatggaaattcactggact |
44544983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 39642189 - 39642125
Alignment:
| Q |
114 |
tctctcattgcaatttaagagatgaaaattcactggactctactgtcacatgagacaatcatctc |
178 |
Q |
| |
|
|||||||||||| | ||| |||| ||||||||||||||||| |||||| ||||||||| |||| |
|
|
| T |
39642189 |
tctctcattgcatatcaagggatggaaattcactggactctaacgtcacaggagacaatcctctc |
39642125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University