View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11436_low_1 (Length: 861)

Name: NF11436_low_1
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11436_low_1
NF11436_low_1
[»] chr3 (57 HSPs)
chr3 (17-851)||(989006-989837)
chr3 (41-238)||(1022688-1022886)
chr3 (41-238)||(1007660-1007858)
chr3 (383-494)||(803191-803302)
chr3 (61-234)||(997797-997971)
chr3 (61-234)||(1014187-1014361)
chr3 (384-649)||(956190-956458)
chr3 (383-504)||(3754557-3754678)
chr3 (383-463)||(4142107-4142187)
chr3 (400-503)||(1007419-1007522)
chr3 (401-503)||(1022447-1022549)
chr3 (395-488)||(997549-997642)
chr3 (395-488)||(1013939-1014032)
chr3 (386-463)||(1931130-1931207)
chr3 (395-463)||(4157929-4157997)
chr3 (384-494)||(2459242-2459352)
chr3 (396-466)||(2678385-2678455)
chr3 (385-463)||(2696707-2696785)
chr3 (787-834)||(997197-997244)
chr3 (787-834)||(1013587-1013634)
chr3 (398-461)||(2442039-2442102)
chr3 (386-461)||(2476634-2476709)
chr3 (386-461)||(2644338-2644413)
chr3 (386-461)||(2659128-2659203)
chr3 (402-461)||(7334231-7334290)
chr3 (397-463)||(968669-968735)
chr3 (392-494)||(1940561-1940663)
chr3 (391-488)||(7432035-7432132)
chr3 (408-460)||(768327-768379)
chr3 (72-135)||(1027799-1027863)
chr3 (410-461)||(7324431-7324482)
chr3 (392-455)||(13479584-13479647)
chr3 (167-237)||(802954-803024)
chr3 (187-233)||(2686101-2686147)
chr3 (386-460)||(9594600-9594674)
chr3 (189-233)||(1438225-1438269)
chr3 (190-230)||(1936766-1936806)
chr3 (394-494)||(1936964-1937064)
chr3 (21-224)||(1940195-1940399)
chr3 (393-461)||(2456249-2456317)
chr3 (397-461)||(12133097-12133161)
chr3 (187-239)||(12133304-12133356)
chr3 (392-466)||(2686294-2686371)
chr3 (395-498)||(3745971-3746074)
chr3 (386-461)||(7942485-7942560)
chr3 (386-461)||(9561961-9562036)
chr3 (410-461)||(9565829-9565880)
chr3 (676-754)||(968387-968465)
chr3 (41-95)||(969023-969077)
chr3 (712-754)||(1937294-1937336)
chr3 (63-237)||(7431714-7431887)
chr3 (409-459)||(23230981-23231031)
chr3 (129-234)||(671041-671146)
chr3 (187-220)||(763338-763371)
chr3 (386-463)||(1891040-1891117)
chr3 (713-754)||(1931469-1931510)
chr3 (412-461)||(13498224-13498273)
[»] chr5 (12 HSPs)
chr5 (383-469)||(11081805-11081891)
chr5 (401-472)||(23766853-23766924)
chr5 (401-472)||(23816701-23816772)
chr5 (396-466)||(1427679-1427749)
chr5 (392-472)||(23861008-23861088)
chr5 (403-468)||(23769639-23769704)
chr5 (403-468)||(23819487-23819552)
chr5 (392-472)||(23814075-23814155)
chr5 (402-472)||(23732156-23732226)
chr5 (609-659)||(23769851-23769901)
chr5 (609-659)||(23819699-23819749)
chr5 (542-599)||(41973606-41973663)
[»] chr4 (6 HSPs)
chr4 (384-491)||(20019746-20019853)
chr4 (392-650)||(22672109-22672358)
chr4 (72-235)||(22671808-22671970)
chr4 (386-430)||(20016161-20016205)
chr4 (787-834)||(22672519-22672566)
chr4 (411-461)||(11032910-11032960)
[»] chr8 (1 HSPs)
chr8 (394-561)||(19727781-19727948)
[»] scaffold1004 (1 HSPs)
scaffold1004 (187-233)||(2374-2420)
[»] scaffold0760 (1 HSPs)
scaffold0760 (187-233)||(4869-4915)
[»] chr7 (3 HSPs)
chr7 (395-461)||(1078145-1078211)
chr7 (177-238)||(1077942-1078003)
chr7 (411-462)||(1421170-1421221)
[»] chr1 (3 HSPs)
chr1 (393-462)||(51381438-51381507)
chr1 (419-462)||(24246506-24246549)
chr1 (412-461)||(24629213-24629262)
[»] scaffold0044 (1 HSPs)
scaffold0044 (386-462)||(89142-89218)
[»] chr2 (5 HSPs)
chr2 (186-234)||(36577621-36577669)
chr2 (393-449)||(6538846-6538902)
chr2 (385-461)||(36577366-36577442)
chr2 (393-491)||(20537988-20538086)
chr2 (408-461)||(7160752-7160805)
[»] chr6 (3 HSPs)
chr6 (409-462)||(17368365-17368418)
chr6 (398-458)||(370773-370833)
chr6 (410-460)||(24417486-24417536)
[»] scaffold0200 (1 HSPs)
scaffold0200 (542-599)||(914-971)


Alignment Details
Target: chr3 (Bit Score: 781; Significance: 0; HSPs: 57)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 781; E-Value: 0
Query Start/End: Original strand, 17 - 851
Target Start/End: Complemental strand, 989837 - 989006
Alignment:
Q  17 aaatataactgcaaattctccagttgcagattcaaacggccattgattaacaatgattcatgaagtaaccaataatcaggcaaatacaaaatgaatatca 116  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  989837 aaatataactgcaaattctccagttgcagattcaaaccgccattgattaacaatgattcatgaagtaaccaataatcaggcaaatacaaaatgaatatca 989738  T
Q  117 tagacataaattaacatatgggttctagttaaatctcatgctcaagtctcattgcaccgcatctacaagttaacattaaaaacaaggtgatattaaactc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  989737 tagacataaattaacatatgggttctagttaaatctcatgctcaagtctcattgcaccgcatctacaagttaacattaaaaacaaggtgatattaaactc 989638  T
Q  217 tcaatgcagacttctggggtgtctacagacacaaaaagccgtgaagtgtcatttctacggttgtaaaaaataaatttctgttgccgaaagctattattag 316  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| | |   |    
T  989637 tcaatgcagacttctggggtgtctacagacacaaaaagccgagaagtgtcatttctacggttgtaaaaaataaatttctgttgcccaaagctttga---g 989541  T
Q  317 acacttgtcgcactaggtaatcctcaaaaatatatactgccttgaaaacgtcataagatggtctataaggatcttgcatgtaagaaatagtgaacaattt 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  989540 acacttgtcgcactaggtaatcctcaaaaatatatactgccttgaaaacgtcataagatggtctataaggatcttgcatgtaagaaatagtgaacaattt 989441  T
Q  417 agtccaagactctttatttccgtactctttcattacccaaacatcatcactagaaaaaatgcacaagcaatctctcaaaacagtcaaaaccaagggatat 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  989440 agtccaagactctttatttccgtactctttcattacccaaacatcatcaccagaaaaaatgcacaagcaatctctcaaaacagtcaaaaccaagggatat 989341  T
Q  517 gcatgtacctcaccatcatcaggaagcaaaacctcttgataagacccactccctaaatcaagagcagcaacaaaacattgacttttcaattgatctttag 616  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  989340 gcatgtacctcaccatcatcaggaagcaaaacctcttgataagacccactccctaaatcaagagcagcaacaaaacattgacttctcgattgatctttag 989241  T
Q  617 aagccaaccaattaatggtgccactcacaaattgtcccaattttttcagagggaaaaccaaagggaaattcgaaatgttttcccaagaactagtacccaa 716  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  989240 aagccaaccaattaatggtgccactcacaaattgtcccaattttttcagagggaaaaccaaagggaaattcgaaatgttttcccaagaactagtacccaa 989141  T
Q  717 agtatgaaccttcactttatatttgtcaacaaaattactaatattagaatcaattaaacgtaaaaagactacaaccttgtaattatcaccaacaggatca 816  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  989140 agtatgaaccttcactttatatttgtcaacaaaattactaatattagaatcaattaaacgtaaaaagactacaaccttgtaattatcaccaacaggatca 989041  T
Q  817 tatccgaagccatacatcctcataacttgcctttg 851  Q
    |||||||||||||||||||||||||| ||| ||||    
T  989040 tatccgaagccatacatcctcataacgtgcttttg 989006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 41 - 238
Target Start/End: Complemental strand, 1022886 - 1022688
Alignment:
Q  41 tgcagattcaaacggccattgattaacaatgattcatgaagtaaccaataatcagg-caaatacaaaatgaatatcatagacataaattaacatatgggt 139  Q
    |||| ||||||| | ||||||  || |||||||||||||||||| ||||||||||  ||| | |||||| ||||||||| || ||||||||||||| |||    
T  1022886 tgcaaattcaaatgaccattggatatcaatgattcatgaagtaatcaataatcagaacaagttcaaaataaatatcataaacgtaaattaacatataggt 1022787  T
Q  140 tctagttaaatctcatgctcaagtctcattgcaccgcatctacaagttaacattaaaaacaaggtgatattaaactctcaatgcagacttctggggtgt 238  Q
    || ||||| || |||||||||||   ||| ||||| |||||||||  || ||||||  |||||| |||||||||||||||| ||| |||||||||||||    
T  1022786 tccagttagatttcatgctcaagggacatagcacctcatctacaaactagcattaaggacaaggcgatattaaactctcaacgcacacttctggggtgt 1022688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 41 - 238
Target Start/End: Complemental strand, 1007858 - 1007660
Alignment:
Q  41 tgcagattcaaacggccattgattaacaatgattcatgaagtaaccaataatcagg-caaatacaaaatgaatatcatagacataaattaacatatgggt 139  Q
    |||| ||||||| | ||||||  || |||||||||||||||||| ||||||||||  ||| | |||||| ||||||||| || ||||||||||||| |||    
T  1007858 tgcaaattcaaatgaccattggatatcaatgattcatgaagtaatcaataatcagaacaagttcaaaataaatatcataaacgtaaattaacatataggt 1007759  T
Q  140 tctagttaaatctcatgctcaagtctcattgcaccgcatctacaagttaacattaaaaacaaggtgatattaaactctcaatgcagacttctggggtgt 238  Q
    || ||||| || ||||||||||    ||| |||||  ||||||||  || |||||| || |||| |||||||||||||||| ||| |||||||||||||    
T  1007758 tccagttagatttcatgctcaaaggacatagcaccttatctacaaactagcattaagaataaggcgatattaaactctcaacgcacacttctggggtgt 1007660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 383 - 494
Target Start/End: Original strand, 803191 - 803302
Alignment:
Q  383 aaggatcttgcatgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcatcactagaaaaaatgcacaa 482  Q
    |||||| |||||||| | | | ||||||||| ||||||||||||||||||||||| || |||||||| |||||||||||||||| |||||  ||||||||    
T  803191 aaggatattgcatgtgacagacagtgaacaacttagtccaagactctttatttccatattctttcataacccaaacatcatcaccagaaatcatgcacaa 803290  T
Q  483 gcaatctctcaa 494  Q
    |||||| |||||    
T  803291 gcaatccctcaa 803302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 61 - 234
Target Start/End: Complemental strand, 997971 - 997797
Alignment:
Q  61 gattaacaatgattcatgaagtaaccaataatc-aggcaaatacaaaatgaatatcatagacataaattaacatatgggttctagttaaatctcatgctc 159  Q
    ||||||||| || ||| ||| |||||||||||| |  ||| |||||||| ||||||||| |||||||||||||||| || ||||||||||| |||| |||    
T  997971 gattaacaaggactcaggaaataaccaataatccatacaagtacaaaataaatatcataaacataaattaacatataggctctagttaaatatcatactc 997872  T
Q  160 aagtctcattgcaccgcatctacaagttaacattaaaaacaaggtgatattaaactctcaatgcagacttctggg 234  Q
    ||||  ||| ||||| |||| |||   || |||||| || || | |||||||||||||||| |||||||||||||    
T  997871 aagtgacatagcacctcatcaacatactagcattaagaaaaaagggatattaaactctcaacgcagacttctggg 997797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 61 - 234
Target Start/End: Complemental strand, 1014361 - 1014187
Alignment:
Q  61 gattaacaatgattcatgaagtaaccaataatc-aggcaaatacaaaatgaatatcatagacataaattaacatatgggttctagttaaatctcatgctc 159  Q
    ||||||||| || ||| ||| |||||||||||| |  ||| |||||||| ||||||||| |||||||||||||||| || ||||||||||| |||| |||    
T  1014361 gattaacaaggactcaggaaataaccaataatccatacaagtacaaaataaatatcatatacataaattaacatataggctctagttaaatatcatactc 1014262  T
Q  160 aagtctcattgcaccgcatctacaagttaacattaaaaacaaggtgatattaaactctcaatgcagacttctggg 234  Q
    ||||  ||| ||||| |||| |||   || |||||| || || | |||||||||||||||| |||||||||||||    
T  1014261 aagtgacatagcacctcatcaacatactagcattaagaaaaaagggatattaaactctcaacgcagacttctggg 1014187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 384 - 649
Target Start/End: Complemental strand, 956458 - 956190
Alignment:
Q  384 aggatcttgcatgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcatcactagaaaaaatgcacaag 483  Q
    |||||||||||||| ||||||| |||||||||||  |||||||||||| ||||| || || ||||| | |||||||||   || | |||  |||||||||    
T  956458 aggatcttgcatgtgagaaataatgaacaatttatgccaagactctttttttccatattccttcataatccaaacatcgcaaccaaaaatcatgcacaag 956359  T
Q  484 caatctctcaaaacagtcaaaaccaagggatatgcatgtacctcaccatcatcaggaagcaaaacctcttgataagacccactccctaaatcaagagcag 583  Q
    ||||| || |||||| ||||   ||| | |  |||||  ||||| |||| ||| || | ||||||||||||||||||| |  |||  |||||||||| |     
T  956358 caatccctgaaaacactcaagttcaaagaacgtgcatccacctcgccataatcgggcaacaaaacctcttgataagactcgttcctcaaatcaagagaaa 956259  T
Q  584 caacaaaacattgacttttc---aattgatctttagaagccaaccaattaatggtgccactcacaaatt 649  Q
    |||||||| ||||| |||||      | |||||||||| |||||||||| || ||||||||||||||||    
T  956258 caacaaaatattgatttttcctagcataatctttagaaaccaaccaattcattgtgccactcacaaatt 956190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 383 - 504
Target Start/End: Complemental strand, 3754678 - 3754557
Alignment:
Q  383 aaggatcttgcatgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcatcactagaaaaaatgcacaa 482  Q
    ||||||||  |||| ||| |||||| ||||||||||||||||||||||||||||| || || ||||| |||||||||||| ||| ||||   | ||||||    
T  3754678 aaggatctctcatgcaaggaatagtaaacaatttagtccaagactctttatttccatattccttcataacccaaacatcaacaccagaagtcacgcacaa 3754579  T
Q  483 gcaatctctcaaaacagtcaaa 504  Q
    |||||| ||||||||| |||||    
T  3754578 gcaatccctcaaaacactcaaa 3754557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 383 - 463
Target Start/End: Original strand, 4142107 - 4142187
Alignment:
Q  383 aaggatcttgcatgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcat 463  Q
    ||||||||  |||||||| |||||||||||||||||||||||||||||||||||| || || ||||| | |||||||||||    
T  4142107 aaggatctctcatgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 4142187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 400 - 503
Target Start/End: Complemental strand, 1007522 - 1007419
Alignment:
Q  400 gaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcatcactagaaaaaatgcacaagcaatctctcaaaacag 499  Q
    ||||||||||||||||||||||| ||||| |||||||| || || |||||||||||||||||||||| | |||| | |  ||||||||| || ||||||     
T  1007522 gaaatagtgaacaatttagtccaggactcgttatttccatattccttcattacccaaacatcatcaccacaaaacacggtcaagcaatccctaaaaacac 1007423  T
Q  500 tcaa 503  Q
    ||||    
T  1007422 tcaa 1007419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 401 - 503
Target Start/End: Complemental strand, 1022549 - 1022447
Alignment:
Q  401 aaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcatcactagaaaaaatgcacaagcaatctctcaaaacagt 500  Q
    |||||||||||||||||||||| ||||| |||||||| || || |||||||||||||||||||||| | |||| | |  ||||||||| || |||||| |    
T  1022549 aaatagtgaacaatttagtccatgactcgttatttccatattccttcattacccaaacatcatcaccacaaaacacggtcaagcaatccctaaaaacact 1022450  T
Q  501 caa 503  Q
    |||    
T  1022449 caa 1022447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 395 - 488
Target Start/End: Complemental strand, 997642 - 997549
Alignment:
Q  395 tgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcatcactagaaaaaatgcacaagcaatc 488  Q
    ||||||| || ||||| | |||||||||||||||||||||||| || || ||||||||||||||| |||||| |||||| |||  |||||||||    
T  997642 tgtaagatatggtgaatagtttagtccaagactctttatttccatattccttcattacccaaacaacatcaccagaaaacatgatcaagcaatc 997549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 395 - 488
Target Start/End: Complemental strand, 1014032 - 1013939
Alignment:
Q  395 tgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcatcactagaaaaaatgcacaagcaatc 488  Q
    ||||||| || ||||| | |||||||||||||||||||||||| || || ||||||||||||||| |||||| |||||| |||  |||||||||    
T  1014032 tgtaagatatggtgaatagtttagtccaagactctttatttccatattccttcattacccaaacaacatcaccagaaaacatgatcaagcaatc 1013939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 386 - 463
Target Start/End: Original strand, 1931130 - 1931207
Alignment:
Q  386 gatcttgcatgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcat 463  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||| |  ||  |||| |||||||||||||    
T  1931130 gatcttgcatgtaagaaatagtgaacaatttagtccaggagtctttatttccatgttccatcataacccaaacatcat 1931207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 395 - 463
Target Start/End: Original strand, 4157929 - 4157997
Alignment:
Q  395 tgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcat 463  Q
    ||||||| ||||||||||||||||||||||||||||||||||| || || ||||| | |||||||||||    
T  4157929 tgtaagagatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 4157997  T

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Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 384 - 494
Target Start/End: Complemental strand, 2459352 - 2459242
Alignment:
Q  384 aggatcttgcatgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcatcactagaaaaaatgcacaag 483  Q
    ||||||| ||||||||||||  || |||||||| |||||||||||||||||||| || || ||||| | ||||||| ||| || |||||  ||| |||||    
T  2459352 aggatctggcatgtaagaaacggtaaacaattttgtccaagactctttatttccatattccttcataatccaaacaacatgaccagaaattatggacaag 2459253  T
Q  484 caatctctcaa 494  Q
    ||||| |||||    
T  2459252 caatcactcaa 2459242  T

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Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 396 - 466
Target Start/End: Original strand, 2678385 - 2678455
Alignment:
Q  396 gtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcatcac 466  Q
    ||||| ||||||||||||||||||||| |||||||| ||||| || | |||||| ||||||||||||||||    
T  2678385 gtaaggaatagtgaacaatttagtccatgactctttttttccatattgtttcataacccaaacatcatcac 2678455  T

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Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 385 - 463
Target Start/End: Original strand, 2696707 - 2696785
Alignment:
Q  385 ggatcttgcatgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcat 463  Q
    ||||||| ||||||||| | ||||||||||||| ||||||||||||||||||| || || ||||| | |||||||||||    
T  2696707 ggatcttccatgtaagatacagtgaacaatttaatccaagactctttatttccatattccttcataatccaaacatcat 2696785  T

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Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 787 - 834
Target Start/End: Complemental strand, 997244 - 997197
Alignment:
Q  787 acaaccttgtaattatcaccaacaggatcatatccgaagccatacatc 834  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||    
T  997244 acaaccttgtaattatcactaacagggtcatatccgaagccatacatc 997197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 787 - 834
Target Start/End: Complemental strand, 1013634 - 1013587
Alignment:
Q  787 acaaccttgtaattatcaccaacaggatcatatccgaagccatacatc 834  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||    
T  1013634 acaaccttgtaattatcactaacagggtcatatccgaagccatacatc 1013587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 398 - 461
Target Start/End: Complemental strand, 2442102 - 2442039
Alignment:
Q  398 aagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatc 461  Q
    |||||| ||||||||||||||||||||| ||||||||||| ||||| ||||| | |||||||||    
T  2442102 aagaaagagtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 2442039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 386 - 461
Target Start/End: Complemental strand, 2476709 - 2476634
Alignment:
Q  386 gatcttgcatgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatc 461  Q
    |||||||||||| || || |||| |||||||||||||||||||||||||||| || | |||||| | |||||||||    
T  2476709 gatcttgcatgttaggaacagtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatc 2476634  T

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Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 386 - 461
Target Start/End: Original strand, 2644338 - 2644413
Alignment:
Q  386 gatcttgcatgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatc 461  Q
    ||||||||| || || ||||||| ||||||||||||||||||||| |||||| ||||| ||||| | |||||||||    
T  2644338 gatcttgcaggttaggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 2644413  T

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Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 386 - 461
Target Start/End: Original strand, 2659128 - 2659203
Alignment:
Q  386 gatcttgcatgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatc 461  Q
    ||||||||| || || ||||||| ||||||||||||||||||||| |||||| ||||| ||||| | |||||||||    
T  2659128 gatcttgcaggttaggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 2659203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 402 - 461
Target Start/End: Original strand, 7334231 - 7334290
Alignment:
Q  402 aatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatc 461  Q
    ||||||| ||||||||||||||||||||||||||||||| || ||||| | |||||||||    
T  7334231 aatagtgtacaatttagtccaagactctttatttccgtagtccttcatgatccaaacatc 7334290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 397 - 463
Target Start/End: Complemental strand, 968735 - 968669
Alignment:
Q  397 taagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcat 463  Q
    |||||||||||||| ||||||||||| |||||||||||||| |  || ||||| |||||||||||||    
T  968735 taagaaatagtgaataatttagtccatgactctttatttccatgttccttcataacccaaacatcat 968669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 392 - 494
Target Start/End: Original strand, 1940561 - 1940663
Alignment:
Q  392 gcatgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcatcactagaaaaaatgcacaagcaatctct 491  Q
    ||||| ||||||||||||||||||||||||| || |||| |||||| |  || ||||| ||||||||||||| || |  || |||||||||  |||||||    
T  1940561 gcatgcaagaaatagtgaacaatttagtccacgagtcttgatttccatgttccttcataacccaaacatcatgaccaataacaatgcacaaagaatctct 1940660  T
Q  492 caa 494  Q
    |||    
T  1940661 caa 1940663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 391 - 488
Target Start/End: Original strand, 7432035 - 7432132
Alignment:
Q  391 tgcatgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcatcactagaaaaaatgcacaagcaatc 488  Q
    |||| ||||||||| ||||||||||||||||| || ||||||||||| || || |||||   ||||||||||| || || ||  ||||||||||||||    
T  7432035 tgcaagtaagaaatggtgaacaatttagtccacgattctttatttccatattccttcatactccaaacatcatgaccagcaaggatgcacaagcaatc 7432132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 408 - 460
Target Start/End: Original strand, 768327 - 768379
Alignment:
Q  408 gaacaatttagtccaagactctttatttccgtactctttcattacccaaacat 460  Q
    ||||||||||||||||||||||| |||||||||||| ||||| | ||||||||    
T  768327 gaacaatttagtccaagactcttcatttccgtactcattcataatccaaacat 768379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 135
Target Start/End: Complemental strand, 1027863 - 1027799
Alignment:
Q  72 attcatgaagtaaccaataatcagg-caaatacaaaatgaatatcatagacataaattaacatat 135  Q
    ||||||||||||||||||||| ||  ||| |||||||| ||||||||| ||||||||||||||||    
T  1027863 attcatgaagtaaccaataatgagaacaagtacaaaataaatatcataaacataaattaacatat 1027799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 410 - 461
Target Start/End: Original strand, 7324431 - 7324482
Alignment:
Q  410 acaatttagtccaagactctttatttccgtactctttcattacccaaacatc 461  Q
    ||||||||||||||||||||||||||||||| || ||||| | |||||||||    
T  7324431 acaatttagtccaagactctttatttccgtagtccttcataatccaaacatc 7324482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 392 - 455
Target Start/End: Complemental strand, 13479647 - 13479584
Alignment:
Q  392 gcatgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattaccca 455  Q
    |||||| |||||||||||||||||| ||||||||||||| | |||| || |||||||| |||||    
T  13479647 gcatgttagaaatagtgaacaattttgtccaagactcttgaattccatattctttcatgaccca 13479584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 237
Target Start/End: Original strand, 802954 - 803024
Alignment:
Q  167 attgcaccgcatctacaagttaacattaaaaacaaggtgatattaaactctcaatgcagacttctggggtg 237  Q
    ||||||||||||||||   ||  |||||| ||||||||||||| || ||||||||||||| ||||||||||    
T  802954 attgcaccgcatctacgtcttcgcattaagaacaaggtgatatcaagctctcaatgcagatttctggggtg 803024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 2686101 - 2686147
Alignment:
Q  187 taacattaaaaacaaggtgatattaaactctcaatgcagacttctgg 233  Q
    ||||||||| |||||||  ||||||||||||||||||||||||||||    
T  2686101 taacattaagaacaaggccatattaaactctcaatgcagacttctgg 2686147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 386 - 460
Target Start/End: Original strand, 9594600 - 9594674
Alignment:
Q  386 gatcttgcatgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacat 460  Q
    |||||||||||| || || |  ||||||||||||||||||||||| |||||||||||  ||||| | ||||||||    
T  9594600 gatcttgcatgttaggaacatggaacaatttagtccaagactcttcatttccgtacttattcataatccaaacat 9594674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 1438269 - 1438225
Alignment:
Q  189 acattaaaaacaaggtgatattaaactctcaatgcagacttctgg 233  Q
    ||||||||||||||||||||| |||||||||| | ||||||||||    
T  1438269 acattaaaaacaaggtgatatcaaactctcaacgtagacttctgg 1438225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 1936766 - 1936806
Alignment:
Q  190 cattaaaaacaaggtgatattaaactctcaatgcagacttc 230  Q
    |||||||||||||||||||| |||||||||| |||||||||    
T  1936766 cattaaaaacaaggtgatatcaaactctcaacgcagacttc 1936806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 394 - 494
Target Start/End: Original strand, 1936964 - 1937064
Alignment:
Q  394 atgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcatcactagaaaaaatgcacaagcaatctctca 493  Q
    |||| |||||||||||||||||||| ||| || |||||||||   || || ||||| ||||||||||||| || | |||  |||||||| ||||| ||||    
T  1936964 atgtgagaaatagtgaacaatttagaccaggattctttatttttatattccttcataacccaaacatcataaccaaaaaccatgcacaaacaatccctca 1937063  T
Q  494 a 494  Q
    |    
T  1937064 a 1937064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 224
Target Start/End: Original strand, 1940195 - 1940399
Alignment:
Q  21 ataactgcaaattctccagttgcagattcaaacggccattgattaacaatgattcatgaagtaaccaataatcag-gcaaatacaaaatgaatatcatag 119  Q
    |||||| ||| ||||| || | || ||||||| || ||||  || |||||||| |||||||||||||||||||||  |||||| ||||  |||| ||||     
T  1940195 ataactacaatttctcaagctacatattcaaatggacattacttgacaatgatccatgaagtaaccaataatcagaacaaataaaaaacaaataccataa 1940294  T
Q  120 acataaattaacatatgggttctagttaaatctcatgctcaagtctcattgcaccgcatctacaagttaacattaaaaacaaggtgatattaaactctca 219  Q
    ||| ||||||||||||    ||||||| | |||||| |||| ||   || | ||| | ||||||   || || ||| ||||||||||||| |||||||||    
T  1940295 acagaaattaacatataaagtctagtttagtctcattctcatgtgatatagaaccacgtctacattatagcactaagaacaaggtgatatcaaactctca 1940394  T
Q  220 atgca 224  Q
    |||||    
T  1940395 atgca 1940399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 393 - 461
Target Start/End: Complemental strand, 2456317 - 2456249
Alignment:
Q  393 catgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatc 461  Q
    |||||||| ||||  | |||||||||||||||| ||||||||||| || || ||||| |||||||||||    
T  2456317 catgtaaggaatatggtacaatttagtccaagagtctttatttccatattccttcataacccaaacatc 2456249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 397 - 461
Target Start/End: Complemental strand, 12133161 - 12133097
Alignment:
Q  397 taagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatc 461  Q
    ||||||| | |||||||||||||||| |||||| ||||||| |||||  |||| |||||||||||    
T  12133161 taagaaacattgaacaatttagtccacgactctctatttccatactccctcataacccaaacatc 12133097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 12133356 - 12133304
Alignment:
Q  187 taacattaaaaacaaggtgatattaaactctcaatgcagacttctggggtgtc 239  Q
    ||||||||| ||||||||||||| ||||||| | |||||||||||||| ||||    
T  12133356 taacattaagaacaaggtgatatcaaactcttagtgcagacttctgggctgtc 12133304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 392 - 466
Target Start/End: Original strand, 2686294 - 2686371
Alignment:
Q  392 gcatgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttc---attacccaaacatcatcac 466  Q
    |||| |||| |||||||||||||||| ||||||||||||| ||||| || || |||   || ||||||||||||||||    
T  2686294 gcatataaggaatagtgaacaatttattccaagactctttttttccatattccttcataataacccaaacatcatcac 2686371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 395 - 498
Target Start/End: Complemental strand, 3746074 - 3745971
Alignment:
Q  395 tgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcatcactagaaaaaatgcacaagcaatctctcaa 494  Q
    |||||| |||||| ||||||||||||||||||||||  ||| | || || ||||| | ||||| |||||||| ||||   | |||||||||||| || ||    
T  3746074 tgtaaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaatcccttaa 3745975  T
Q  495 aaca 498  Q
    ||||    
T  3745974 aaca 3745971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 386 - 461
Target Start/End: Complemental strand, 7942560 - 7942485
Alignment:
Q  386 gatcttgcatgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatc 461  Q
    |||||| |||||||| || | || |||||||| |||||||||||||||| || ||||| ||||| | |||||||||    
T  7942560 gatcttccatgtaaggaacattgtacaatttaatccaagactctttattaccatactccttcataatccaaacatc 7942485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 386 - 461
Target Start/End: Original strand, 9561961 - 9562036
Alignment:
Q  386 gatcttgcatgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatc 461  Q
    |||||||||||| || || | || | ||||||||||||||||||| |||||| ||||| ||||| | |||||||||    
T  9561961 gatcttgcatgttaggaacactgtataatttagtccaagactcttgatttccatactcattcataatccaaacatc 9562036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 410 - 461
Target Start/End: Original strand, 9565829 - 9565880
Alignment:
Q  410 acaatttagtccaagactctttatttccgtactctttcattacccaaacatc 461  Q
    ||||||||||||||||||||| || ||||||||| ||||| | |||||||||    
T  9565829 acaatttagtccaagactcttgatctccgtactccttcataatccaaacatc 9565880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 676 - 754
Target Start/End: Complemental strand, 968465 - 968387
Alignment:
Q  676 aaagggaaattcgaaatgttttcccaagaactagtacccaaagtatgaaccttcactttatatttgtcaacaaaattac 754  Q
    |||||||| |||  |||| ||||||||| | | || ||||||||||||||| ||||||| | ||| |||||||||||||    
T  968465 aaagggaacttctgaatgctttcccaagcattggtgcccaaagtatgaaccatcactttgtctttttcaacaaaattac 968387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 969077 - 969023
Alignment:
Q  41 tgcagattcaaacggccattgattaacaatgattcatgaagtaaccaataatcag 95  Q
    |||||||||||| | ||||| ||||||||| || || ||||||||||||||||||    
T  969077 tgcagattcaaatgaccattcattaacaattatccaggaagtaaccaataatcag 969023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 712 - 754
Target Start/End: Original strand, 1937294 - 1937336
Alignment:
Q  712 cccaaagtatgaaccttcactttatatttgtcaacaaaattac 754  Q
    |||||||||||||||||||||| ||  ||||||||||||||||    
T  1937294 cccaaagtatgaaccttcacttcatggttgtcaacaaaattac 1937336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 237
Target Start/End: Original strand, 7431714 - 7431887
Alignment:
Q  63 ttaacaatgattcatgaagtaaccaataatcaggcaaatacaaaatgaatatcatagacataaattaacatatgggttctagttaaatctcatgctcaag 162  Q
    |||||||||||   |||| ||||||| ||| || ||| || ||||| |||| |||| ||||||||||||| || |||| |  || ||||||||||| |||    
T  7431714 ttaacaatgatatgtgaaataaccaacaattag-caagtaaaaaataaatagcataaacataaattaacacataggttatttttgaatctcatgcttaag 7431812  T
Q  163 tctcattgcaccgcatctacaagttaacattaaaaacaaggtgatattaaactctcaatgcagacttctggggtg 237  Q
    |   || |||| |||||||||   || |  ||| ||||||| ||||| |||||||||||||| |||| |||||||    
T  7431813 tgatatagcacagcatctacatcctagcggtaagaacaaggagatatcaaactctcaatgcaaacttttggggtg 7431887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 409 - 459
Target Start/End: Original strand, 23230981 - 23231031
Alignment:
Q  409 aacaatttagtccaagactctttatttccgtactctttcattacccaaaca 459  Q
    ||||||||| |||||||||||| |||||| || |||||||||| |||||||    
T  23230981 aacaatttaatccaagactcttcatttccatattctttcattagccaaaca 23231031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 234
Target Start/End: Original strand, 671041 - 671146
Alignment:
Q  129 aacatatgggttctagttaaatctcatgctcaagtctcattgcaccgcatctacaagttaacattaaaaacaaggtgatattaaactctcaatgcagact 228  Q
    ||||||| |||| || |||||||||||||||||||  ||| |||| ||||||| |   || |||||| | |||||  ||||||||||||||  | |||||    
T  671041 aacatataggttgtaattaaatctcatgctcaagtgacatagcactgcatctaaatcctagcattaagaccaaggcaatattaaactctcagcggagact 671140  T
Q  229 tctggg 234  Q
    ||||||    
T  671141 tctggg 671146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 763338 - 763371
Alignment:
Q  187 taacattaaaaacaaggtgatattaaactctcaa 220  Q
    ||||||||| ||||||||||||||||||||||||    
T  763338 taacattaagaacaaggtgatattaaactctcaa 763371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 386 - 463
Target Start/End: Original strand, 1891040 - 1891117
Alignment:
Q  386 gatcttgcatgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcat 463  Q
    ||||| |||||||||||| | |  |||||||||||||||| ||||||||||| |  || ||||| | |||||||||||    
T  1891040 gatctcgcatgtaagaaacactatacaatttagtccaagagtctttatttccatgttccttcataatccaaacatcat 1891117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 713 - 754
Target Start/End: Original strand, 1931469 - 1931510
Alignment:
Q  713 ccaaagtatgaaccttcactttatatttgtcaacaaaattac 754  Q
    ||||||||||||||||||||| ||  ||||||||||||||||    
T  1931469 ccaaagtatgaaccttcacttcatggttgtcaacaaaattac 1931510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 412 - 461
Target Start/End: Complemental strand, 13498273 - 13498224
Alignment:
Q  412 aatttagtccaagactctttatttccgtactctttcattacccaaacatc 461  Q
    |||||||||||||||||||||||||| || || ||||| | |||||||||    
T  13498273 aatttagtccaagactctttatttccatattccttcataatccaaacatc 13498224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 2e-24; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 383 - 469
Target Start/End: Complemental strand, 11081891 - 11081805
Alignment:
Q  383 aaggatcttgcatgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcatcactag 469  Q
    ||||||||  |||||||| |||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||    
T  11081891 aaggatctctcatgtaaggaatagtaaacaatttagtccaagactctttatttccatactccttcataacccaaacatcatcactag 11081805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 401 - 472
Target Start/End: Original strand, 23766853 - 23766924
Alignment:
Q  401 aaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcatcactagaaa 472  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||| | ||||||||||| || |||||    
T  23766853 aaatagtgaacaatttagtccaagactctttatttccatattctttcataatccaaacatcattaccagaaa 23766924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 401 - 472
Target Start/End: Original strand, 23816701 - 23816772
Alignment:
Q  401 aaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcatcactagaaa 472  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||| | ||||||||||| || |||||    
T  23816701 aaatagtgaacaatttagtccaagactctttatttccatattctttcataatccaaacatcattaccagaaa 23816772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 396 - 466
Target Start/End: Original strand, 1427679 - 1427749
Alignment:
Q  396 gtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcatcac 466  Q
    ||||||||| ||||||| |||| ||||||||||| ||||||| ||||||||||| ||||||||||||||||    
T  1427679 gtaagaaattgtgaacagtttaatccaagactctgtatttccatactctttcataacccaaacatcatcac 1427749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 392 - 472
Target Start/End: Original strand, 23861008 - 23861088
Alignment:
Q  392 gcatgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcatcactagaaa 472  Q
    ||||| ||| ||||||||||||||||||||||||| ||||  | || || || ||||||| ||||||||||| ||||||||    
T  23861008 gcatgaaaggaatagtgaacaatttagtccaagacgctttcatcccatattccttcattatccaaacatcattactagaaa 23861088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 403 - 468
Target Start/End: Original strand, 23769639 - 23769704
Alignment:
Q  403 atagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcatcacta 468  Q
    |||||||||||||||||||||||| ||||||| || || || ||||| | ||||||||||| ||||    
T  23769639 atagtgaacaatttagtccaagacgctttattcccatattccttcataatccaaacatcattacta 23769704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 403 - 468
Target Start/End: Original strand, 23819487 - 23819552
Alignment:
Q  403 atagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcatcacta 468  Q
    |||||||||||||||||||||||| ||||||| || || || ||||| | ||||||||||| ||||    
T  23819487 atagtgaacaatttagtccaagacgctttattcccatattccttcataatccaaacatcattacta 23819552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 392 - 472
Target Start/End: Original strand, 23814075 - 23814155
Alignment:
Q  392 gcatgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcatcactagaaa 472  Q
    ||||| ||| ||||||||||||||||||||||||| || |  | || || || ||||||| ||||||||||| ||||||||    
T  23814075 gcatgaaaggaatagtgaacaatttagtccaagacgctgtcatcccatattccttcattatccaaacatcattactagaaa 23814155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 402 - 472
Target Start/End: Complemental strand, 23732226 - 23732156
Alignment:
Q  402 aatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcatcactagaaa 472  Q
    ||||||||||| |||| |||||||| ||||||| || || || ||||| | ||||||||||| ||||||||    
T  23732226 aatagtgaacagtttattccaagacgctttattcccatattccttcataatccaaacatcattactagaaa 23732156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 609 - 659
Target Start/End: Original strand, 23769851 - 23769901
Alignment:
Q  609 atctttagaagccaaccaattaatggtgccactcacaaattgtcccaattt 659  Q
    |||||||||||||||||||||||| |||||| ||||| ||| |||| ||||    
T  23769851 atctttagaagccaaccaattaatcgtgccattcacatattttcccgattt 23769901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 609 - 659
Target Start/End: Original strand, 23819699 - 23819749
Alignment:
Q  609 atctttagaagccaaccaattaatggtgccactcacaaattgtcccaattt 659  Q
    |||||||||||||||||||||||| |||||| ||||| ||| |||| ||||    
T  23819699 atctttagaagccaaccaattaatcgtgccattcacatattttcccgattt 23819749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 542 - 599
Target Start/End: Original strand, 41973606 - 41973663
Alignment:
Q  542 gcaaaacctcttgataagacccactccctaaatcaagagcagcaacaaaacattgact 599  Q
    |||||||||||||||||||| || ||||||||| ||||| | ||| ||||||| ||||    
T  41973606 gcaaaacctcttgataagactcattccctaaattaagagaaacaataaaacatggact 41973663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 9e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 384 - 491
Target Start/End: Original strand, 20019746 - 20019853
Alignment:
Q  384 aggatcttgcatgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcatcactagaaaaaatgcacaag 483  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||| | |||| || || ||||| ||||||||||||| || |||||  |||||||||    
T  20019746 aggatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaattatgcacaag 20019845  T
Q  484 caatctct 491  Q
     |||||||    
T  20019846 aaatctct 20019853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 392 - 650
Target Start/End: Original strand, 22672109 - 22672358
Alignment:
Q  392 gcatgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcatcactagaaaaaatgcacaagcaatctct 491  Q
    |||||||||||||||||||||||||||||||||| || |||||||| || || |||||||||||||| || |||| |||||| | |  ||||||||| ||    
T  22672109 gcatgtaagaaatagtgaacaatttagtccaagattccttatttccatattccttcattacccaaacgtcgtcaccagaaaacaagatcaagcaatccct 22672208  T
Q  492 caaaacagtcaaaaccaagggatatgcatgtacctcaccatcatcaggaagcaaaacctcttgataagacccactccctaaatcaagagcagcaacaaaa 591  Q
     | |||| |||| | |||   |   |||| |||||| |||| ||  || | ||||| |||||  |||||| || |||| |||||||||| |  || ||||    
T  22672209 gagaacactcaagagcaaaatacgagcatctacctctccataattgggcaacaaaatctctttgtaagactcattccccaaatcaagagaaataataaaa 22672308  T
Q  592 cattgacttttcaattgatctttagaagccaaccaattaatggtgccactcacaaattg 650  Q
    ||||||||||||         |||||||||||||||||||| |||||||||||| ||||    
T  22672309 cattgacttttc---------ttagaagccaaccaattaatcgtgccactcacacattg 22672358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 72 - 235
Target Start/End: Original strand, 22671808 - 22671970
Alignment:
Q  72 attcatgaagtaaccaataatcagg-caaatacaaaatgaatatcatagacataaattaacatatgggttctagttaaatctcatgctcaagtctcattg 170  Q
    ||||||||||||||||||||| ||  ||| |||||||| ||||||||| |||||||||||||||| |||||| |||| |||||||  | |  |  ||| |    
T  22671808 attcatgaagtaaccaataatgagaacaattacaaaataaatatcataaacataaattaacatataggttctggttagatctcattttta--tgacatag 22671905  T
Q  171 caccgcatctacaagttaacattaaaaacaaggtgatattaaactctcaatgcagacttctgggg 235  Q
    |||| ||||||||   || || ||| |||||||||||||||||||||||| ||| ||||||||||    
T  22671906 cacctcatctacatactagcactaagaacaaggtgatattaaactctcaacgcaaacttctgggg 22671970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 386 - 430
Target Start/End: Original strand, 20016161 - 20016205
Alignment:
Q  386 gatcttgcatgtaagaaatagtgaacaatttagtccaagactctt 430  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||    
T  20016161 gatcttgcatgttagaaagagtgaacaatttagtccaagactctt 20016205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 787 - 834
Target Start/End: Original strand, 22672519 - 22672566
Alignment:
Q  787 acaaccttgtaattatcaccaacaggatcatatccgaagccatacatc 834  Q
    ||||||||||||||||||| |||||| ||||||||||||| |||||||    
T  22672519 acaaccttgtaattatcactaacagggtcatatccgaagcaatacatc 22672566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 411 - 461
Target Start/End: Complemental strand, 11032960 - 11032910
Alignment:
Q  411 caatttagtccaagactctttatttccgtactctttcattacccaaacatc 461  Q
    ||||||| |||||||||||||||||||||| || ||||| | |||||||||    
T  11032960 caatttaatccaagactctttatttccgtattccttcatgagccaaacatc 11032910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 394 - 561
Target Start/End: Complemental strand, 19727948 - 19727781
Alignment:
Q  394 atgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcatcactagaaaaaatgcacaagcaatctctca 493  Q
    ||||||||||||||||||| ||||||||| |||||||||||| | || ||| |||| |||||||||||||||| |||||  |||||||| |||| || ||    
T  19727948 atgtaagaaatagtgaacagtttagtccatgactctttatttgcatattctgtcataacccaaacatcatcaccagaaaccatgcacaaacaatttcgca 19727849  T
Q  494 aaacagtcaaaaccaagggatatgcatgtacctcaccatcatcaggaagcaaaacctcttgataagac 561  Q
    | |||  ||||  ||| | ||||| || |||| | |||  |||||| |||||||| ||||| ||||||    
T  19727848 acacacccaaatgcaaagaatatgtatctaccactccaaaatcaggcagcaaaacttcttggtaagac 19727781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1004 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 2420 - 2374
Alignment:
Q  187 taacattaaaaacaaggtgatattaaactctcaatgcagacttctgg 233  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||    
T  2420 taacattaaaaacaaggtgatattagactctcaatgtagacttctgg 2374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0760 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 4915 - 4869
Alignment:
Q  187 taacattaaaaacaaggtgatattaaactctcaatgcagacttctgg 233  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||    
T  4915 taacattaaaaacaaggtgatattagactctcaatgtagacttctgg 4869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 395 - 461
Target Start/End: Original strand, 1078145 - 1078211
Alignment:
Q  395 tgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatc 461  Q
    ||||||||| | |||||||||||||||| |||||| ||||||| ||||| ||||| |||||||||||    
T  1078145 tgtaagaaacattgaacaatttagtccacgactctctatttccatactccttcataacccaaacatc 1078211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 1077942 - 1078003
Alignment:
Q  177 atctacaagttaacattaaaaacaaggtgatattaaactctcaatgcagacttctggggtgt 238  Q
    ||||||||  ||||||||| |||| |||||||||||||||||| |||||| |||||||||||    
T  1077942 atctacaacctaacattaagaacatggtgatattaaactctcattgcagatttctggggtgt 1078003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 411 - 462
Target Start/End: Original strand, 1421170 - 1421221
Alignment:
Q  411 caatttagtccaagactctttatttccgtactctttcattacccaaacatca 462  Q
    ||||||| |||||||||||||||||||||| || ||||| | ||||||||||    
T  1421170 caatttaatccaagactctttatttccgtattccttcataagccaaacatca 1421221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 393 - 462
Target Start/End: Original strand, 51381438 - 51381507
Alignment:
Q  393 catgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatca 462  Q
    |||||||| |||| |||||||||||||||||||||||| |||||| || |||||||| | ||||| ||||    
T  51381438 catgtaaggaatactgaacaatttagtccaagactcttcatttccatattctttcataatccaaatatca 51381507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 419 - 462
Target Start/End: Original strand, 24246506 - 24246549
Alignment:
Q  419 tccaagactctttatttccgtactctttcattacccaaacatca 462  Q
    |||||||||||||||||||||| |||||||| | ||||||||||    
T  24246506 tccaagactctttatttccgtattctttcataagccaaacatca 24246549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 412 - 461
Target Start/End: Original strand, 24629213 - 24629262
Alignment:
Q  412 aatttagtccaagactctttatttccgtactctttcattacccaaacatc 461  Q
    |||||| |||||||||||||||||||||| || ||||| | |||||||||    
T  24629213 aatttaatccaagactctttatttccgtattccttcataagccaaacatc 24629262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 386 - 462
Target Start/End: Complemental strand, 89218 - 89142
Alignment:
Q  386 gatcttgcatgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatca 462  Q
    |||||| |||||||| || | || |||||||||||||||||||||||||||| || || ||||| ||||||| ||||    
T  89218 gatcttccatgtaaggaacattgtacaatttagtccaagactctttatttccatattccttcataacccaaatatca 89142  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 36577669 - 36577621
Alignment:
Q  186 ttaacattaaaaacaaggtgatattaaactctcaatgcagacttctggg 234  Q
    |||||||||| | |||||||||||||||||||||||||| |||||||||    
T  36577669 ttaacattaagaccaaggtgatattaaactctcaatgcatacttctggg 36577621  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 393 - 449
Target Start/End: Complemental strand, 6538902 - 6538846
Alignment:
Q  393 catgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcat 449  Q
    ||||| ||||| | ||||||||||||||||||| ||||||||||| ||||| |||||    
T  6538902 catgttagaaacactgaacaatttagtccaagaatctttatttccatactccttcat 6538846  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 385 - 461
Target Start/End: Complemental strand, 36577442 - 36577366
Alignment:
Q  385 ggatcttgcatgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatc 461  Q
    |||||| |||||||||| |  || ||||||||| ||||||||||||||||||| || || ||||| | |||||||||    
T  36577442 ggatctcgcatgtaagacacggtaaacaatttaatccaagactctttatttccatattccttcataatccaaacatc 36577366  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 393 - 491
Target Start/End: Complemental strand, 20538086 - 20537988
Alignment:
Q  393 catgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcatcactagaaaaaatgcacaagcaatctct 491  Q
    ||||| ||||| ||||||||||||||||||||| |||| | |||| || || ||||| ||||| | ||||| ||  ||||  |||||||| ||||||||    
T  20538086 catgttagaaacagtgaacaatttagtccaagattcttaaattccatattcattcatgacccatatatcatgacccgaaattatgcacaaacaatctct 20537988  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 408 - 461
Target Start/End: Original strand, 7160752 - 7160805
Alignment:
Q  408 gaacaatttagtccaagactctttatttccgtactctttcattacccaaacatc 461  Q
    |||||||||||||||||| || |||||||| ||||| ||||| | |||||||||    
T  7160752 gaacaatttagtccaagaatcattatttccatactccttcataagccaaacatc 7160805  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 409 - 462
Target Start/End: Complemental strand, 17368418 - 17368365
Alignment:
Q  409 aacaatttagtccaagactctttatttccgtactctttcattacccaaacatca 462  Q
    |||||||||||||||||| ||| |||||| ||||||||||| | ||||||||||    
T  17368418 aacaatttagtccaagacccttcatttccatactctttcatcagccaaacatca 17368365  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 398 - 458
Target Start/End: Original strand, 370773 - 370833
Alignment:
Q  398 aagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaac 458  Q
    |||||||| ||||||||||||||||||| ||||||||||| || |  ||||| ||||||||    
T  370773 aagaaatattgaacaatttagtccaagaatctttatttccataattcttcataacccaaac 370833  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 410 - 460
Target Start/End: Original strand, 24417486 - 24417536
Alignment:
Q  410 acaatttagtccaagactctttatttccgtactctttcattacccaaacat 460  Q
    |||||||||||||||| ||||||||||| || |||||||| | ||||||||    
T  24417486 acaatttagtccaagattctttatttccatattctttcataatccaaacat 24417536  T

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Target: scaffold0200 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 542 - 599
Target Start/End: Original strand, 914 - 971
Alignment:
Q  542 gcaaaacctcttgataagacccactccctaaatcaagagcagcaacaaaacattgact 599  Q
    |||||||||||||||||||| || ||||||||| ||||| | ||| ||||||| ||||    
T  914 gcaaaacctcttgataagactcattccctaaattaagagaaacaataaaacatggact 971  T

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