View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11436_low_10 (Length: 545)
Name: NF11436_low_10
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11436_low_10 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 13 - 545
Target Start/End: Original strand, 31548626 - 31549161
Alignment:
| Q |
13 |
atcaggatttgtatgaaatactttatttttcccnnnnnnnaaatgttttctattcaatttccacacttagtcccaacatttagtaaatgaactaaaagtt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
31548626 |
atcaggatttgtatgaaatactttatttttccctttttttaaatgttttctattcaatctccatacttagtcgcaacatttagtaaatgaacaaaaagtt |
31548725 |
T |
|
| Q |
113 |
aaacagctactaaaatccttt---aaatttgaagtatcttgttgagtgtcttttatgaatatatggttttcatctgtgttcttttccaacatgatggaaa |
209 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31548726 |
aaacagctactaaaatccttttgaaaatttgaactatcttgttgagtgtcttttatgaatatatggttttcatctgtgttcttttccaacatgatggaaa |
31548825 |
T |
|
| Q |
210 |
tcaggaatggttactatggatcggtagttgaaatctgtctatatcgtcaacaacgactgatgtcagccttatgatcctcctagttgtattgtctgagaag |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31548826 |
tcaggaatggttactatggatcggtagttgaaatctgtctatatcgtcaacaatgactgatgtcagccttatgatcctcctagttgtattgtctgagaag |
31548925 |
T |
|
| Q |
310 |
acatatatgcatacctcaaaactcaactcattgtctcatttatcttccgttatttttgtcaaatcgacaacgatcaggccaatgtctcagtcataagggc |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31548926 |
acatatatgcatacctcaaaactcaactcattgtctcatttatcttccgttatttttgtcaaatcgacaacgatgaggccaatgtctcagtcataagggc |
31549025 |
T |
|
| Q |
410 |
gaataggaccatcgctttctacttctgcagtacggcgtaagtctcagttgatgttttgtgcagcttaaatgttgatccacggcgatccactgtagaaccg |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
31549026 |
gaataggaccatcgctttctacttctgcagtacggcgtaagtctcggttgatgtttcgtgcagcttaaatgttgatccacggtgatccactgtagaaccg |
31549125 |
T |
|
| Q |
510 |
tcctatatttattatttataccagaatcacaaagtt |
545 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
31549126 |
tcctatatttattatttatgccagaatcgcaaagtt |
31549161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 134 - 198
Target Start/End: Original strand, 18230096 - 18230160
Alignment:
| Q |
134 |
aaatttgaagtatcttgttgagtgtcttttatgaatatatggttttcatctgtgttcttttccaa |
198 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
18230096 |
aaatttgaagtatcttgttgagtgtctttaatgaatatatggttttcatctgtgctcttttccaa |
18230160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 264 - 305
Target Start/End: Original strand, 18230262 - 18230303
Alignment:
| Q |
264 |
gactgatgtcagccttatgatcctcctagttgtattgtctga |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18230262 |
gactgatgtcagccttatgatcctcctagttgtattgtctga |
18230303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 414
Target Start/End: Original strand, 18230391 - 18230434
Alignment:
| Q |
371 |
aatcgacaacgatcaggccaatgtctcagtcataagggcgaata |
414 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
18230391 |
aatcgtcaacgatcaggccaatgtctctgtcataaggacgaata |
18230434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University