View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11436_low_11 (Length: 540)
Name: NF11436_low_11
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11436_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 14 - 451
Target Start/End: Original strand, 5033505 - 5033942
Alignment:
| Q |
14 |
atgaatctaaatattatggtaaaagtagggagggatttggaacctctacgcctcctgcatgggacggtgatttgtaaaattattgtatttagacaga--a |
111 |
Q |
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| T |
5033505 |
atgaatctaaatattatggtaaaagtagggagggatttggaacctctacgcctcgtgcatgggacggtgatttgtaaaattgttggatttagacagagaa |
5033604 |
T |
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| Q |
112 |
aaatttatatctttatatccaatggttctacaagccgatgcaccacacagcgtctatatgatctccacacacatatacataagtgatacataagacttgg |
211 |
Q |
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| T |
5033605 |
aaatttatatcttcatatccaatggttctacaagccgatgcaccacacagcgtctatatgatctccacacacatatacataagtgatacataagacttgg |
5033704 |
T |
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| Q |
212 |
atactctccagctccatcccgtccagtatcacttaacagttggattaatttaatgaccgtgtcctgatctcttaaccattaacggctaagattttgttgg |
311 |
Q |
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| T |
5033705 |
atactctccaactccatcccgtccagtatcacttaacagttggattaatttaacga-cgtgtcctgatctcttaaccgttaacggctaagattttgttgg |
5033803 |
T |
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| Q |
312 |
aggaaataggggcttcagatgatccaattggtcaaatacatacacacatatgcatactcatattgtaattgtgataacaagtttaatagcatgagctagt |
411 |
Q |
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| T |
5033804 |
aggaaataggggcttcagatgatccaattggtcaaatac-tacacacatatgcatactcatattgtaattgtgataacaagtttaatagcatgagctagt |
5033902 |
T |
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| Q |
412 |
caatttaccagccctgattaattacttccacaaataacca |
451 |
Q |
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| T |
5033903 |
caatttaccagccctgattaattacttccacaaataacca |
5033942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 14 - 327
Target Start/End: Original strand, 5039285 - 5039605
Alignment:
| Q |
14 |
atgaatctaaatattatggtaaaagtagggagggatttggaacctctacgcctcctgcatgggacggtgatttgtaaaattattgtatttagacagaaaa |
113 |
Q |
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| T |
5039285 |
atgaatctgaatattatggtaaaattagggagggatttgaatcctcttcggcttctgcatggtgcggcagtttgtaaagctgttggatttagacagaaaa |
5039384 |
T |
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| Q |
114 |
atttatatctttatatccaatggttctacaagccgatgcaccacacagcgtctat--atgat--ctccacacacatatacataagtgatacataagactt |
209 |
Q |
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| T |
5039385 |
atttctctctttaaatccaacggtactacaagccggtgcaccacacaacgactatagatgatccctacacacacatataaataagagatacataagactt |
5039484 |
T |
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| Q |
210 |
ggatactctccag----ctccatcccgtccagtatcacttaacagttggattaatttaatgaccgtgtcctgatctcttaaccattaacggctaagattt |
305 |
Q |
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| T |
5039485 |
ggaaactctccagctccctccatcccgtccagtatcacttaacagttggatt-atttaacgacctagttttgatctcttaaccattctcggataacattt |
5039583 |
T |
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| Q |
306 |
tgttggaggaaataggggcttc |
327 |
Q |
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|||| ||||||| |||||||| |
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| T |
5039584 |
tgttagaggaaaatggggcttc |
5039605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 540
Target Start/End: Original strand, 5034002 - 5034031
Alignment:
| Q |
511 |
ttgaatcaacacagacatgtaacacaaatg |
540 |
Q |
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| T |
5034002 |
ttgaatcaacacagacatgtaacacaaatg |
5034031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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