View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11436_low_13 (Length: 505)
Name: NF11436_low_13
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11436_low_13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 13 - 505
Target Start/End: Original strand, 42766640 - 42767122
Alignment:
| Q |
13 |
cacagacaaattgaaaccttcaaatgaacatatttatgtcaaactgcatcaacaacttcatcgcgactatgcatctcctgcatttgatacacatcgcaca |
112 |
Q |
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| T |
42766640 |
cacacacaaattgaaaccttcagatgaacatatttatgtcaaactgcatcaacaacttcatcgcgactatgcatctcctgcatttgatacacatcgcaga |
42766739 |
T |
|
| Q |
113 |
ccgtataaccatcagccacatttgggcgccactaccagacatctgtgatggtatcctgtaaagcaacattagaaagtaaagacatacaatcccc-actag |
211 |
Q |
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| T |
42766740 |
cc--ataaccatcagccacatttgggcgccactgccaaacatctgtgatag---------aagcaacattagaaagtaaagacatacaatcccccactag |
42766828 |
T |
|
| Q |
212 |
atcctcctctcaaactaacaaccgacgccgccaccccaagcttcacctccatccctccaacctaaggaaaatatttccgccaccgtcttatccttatggc |
311 |
Q |
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| T |
42766829 |
atcctcctcccaaactaacaaccgacgccgccaccccaagcttcacctccatccctccaacctaaggaaaatatttccgccaccgtcttatccttgtggc |
42766928 |
T |
|
| Q |
312 |
taaccgttaatacttacgaatgtagatttaattaattgtaattttgatctcttaagttttatttaatcgtgcaattaatcttccacttttaaaatttacc |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42766929 |
taaccgttaatacttacgaatgtagatttaattaattgtaattttgatctcttaagttttatttaatcgtgaaattaatcttccacttttaaaatttacc |
42767028 |
T |
|
| Q |
412 |
ggtatgaatcattttctcaattcttagattaaaaaatacaagctgataatgtgtaagtagaattgtcaaatggtctcttgactataatactcaa |
505 |
Q |
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| T |
42767029 |
ggtatgaatcattttctcaattcttagattaaaaaatacaagctgataatgtgtaagtagaattgtcaaatggtctcttgactataatactcaa |
42767122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 4e-33; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 33989132 - 33988851
Alignment:
| Q |
18 |
acaaattgaaaccttcaaatgaacatatttatgtcaaactgcatcaacaacttcatcgcgactatgcatctcct---------gcatttgatacacatcg |
108 |
Q |
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| T |
33989132 |
acaaattgaaacctccagaggaacatttttatgccaaactgcgtcaacaacttcatcgcggctatgcatctcctgcctcatgagcatttgatacacacca |
33989033 |
T |
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| Q |
109 |
cacaccgtataaccatcagccacatttgggcgccacta--------ccagacatctgtgatggtatcctgtaaagcaacattagaaagtaaagacataca |
200 |
Q |
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| T |
33989032 |
caaaccgtataaccatcacccacattagagcgccactaccaaacatccaaacatctttagtaatatcctgcaaagtaacatttgaaagaaaatatgtaca |
33988933 |
T |
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| Q |
201 |
at-ccccactagatcctcctctcaaactaacaaccgacgccgccaccccaagcttcacctccatccctccaacctaaggaaa |
281 |
Q |
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| T |
33988932 |
ctcccccactagatcctcctcctaagccaacaaccgacgacgccaccccaagcttcccctcaatccccccaacctaaggaaa |
33988851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 13 - 286
Target Start/End: Complemental strand, 15045437 - 15045155
Alignment:
| Q |
13 |
cacagacaaattgaaaccttcaaatgaacatatttatgtcaaactgcatcaacaacttcatcgcgactatgcatctcctgc---------atttgataca |
103 |
Q |
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|||| ||||||||||||||||| ||| |||| ||||| |||| ||||||||||||||||| || |||||||||||||||| |||| ||||| |
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| T |
15045437 |
cacacacaaattgaaaccttcagatgcacatttttataccaaattgcatcaacaacttcattgcaactatgcatctcctgcctcataagcatttaataca |
15045338 |
T |
|
| Q |
104 |
catcgcacaccgtataaccatcagccacatttgggcgccactaccagacatctgtgatggtatcctgtaaagcaacattagaaagtaaagacatacaat- |
202 |
Q |
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|| | ||||||||||||| ||||||||| |||||||||| || |||| ||| | ||||||| |||| ||||||| || ||||| ||||| | |
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| T |
15045337 |
caccatggaccgtataaccataagccacattagggcgccactgtcaaacatttgtagtagtatcctacaaagtaacattaaaattcaaagatatacactt |
15045238 |
T |
|
| Q |
203 |
ccccactagatcctcctctcaaactaacaaccgacgccgccaccccaa-gcttcacctccatccctccaacctaaggaaaatatt |
286 |
Q |
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| T |
15045237 |
ccccactagatcctcccc--aagccaacaaccgacgccgccaccccaaagcttctcctccttccccccaacctaaggaaaatatt |
15045155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 28456477 - 28456413
Alignment:
| Q |
244 |
accccaagcttcacctccatccctccaacctaaggaaaatatttccgccaccgtcttatccttat |
308 |
Q |
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| T |
28456477 |
accccaagcttctcctccttcctcccaacctaaggaaaacaattatgctaccgtcttatccttat |
28456413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 279
Target Start/End: Original strand, 33069526 - 33069630
Alignment:
| Q |
177 |
aacattagaaagtaaagacatacaatccc-cactagatcctcctctcaaactaacaaccgacgccgcca-ccccaagcttcacctccatccctccaacct |
274 |
Q |
| |
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|||||||||| | | |||| |||| |||| ||||||||||||||| ||| ||||||| | |||| ||| |||||||| |||| ||| || ||||||||| |
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| T |
33069526 |
aacattagaatgcatagacctacactccctcactagatcctcctcccaagctaacaaacaccgcctccagccccaagcatcacatccttcactccaacct |
33069625 |
T |
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| Q |
275 |
aagga |
279 |
Q |
| |
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||||| |
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| T |
33069626 |
aagga |
33069630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 214 - 305
Target Start/End: Complemental strand, 20417086 - 20416994
Alignment:
| Q |
214 |
cctcctctcaaactaacaaccgacgccgccacccc-aagcttcacctccatccctccaacctaaggaaaatatttccgccaccgtcttatcct |
305 |
Q |
| |
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|||| |||||| | ||||||||||| ||||||||| ||||||| || | |||| ||||||||||||||| |||||||||||||||| ||||| |
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| T |
20417086 |
cctcttctcaagccaacaaccgacgtcgccacccccaagcttcctctacttccccccaacctaaggaaaacatttccgccaccgtctcatcct |
20416994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 13 - 308
Target Start/End: Complemental strand, 38029391 - 38029085
Alignment:
| Q |
13 |
cacagacaaattgaaaccttcaaatgaacatatttatgtcaaactgcatcaacaacttcatcgcgactatgcatctcct---------gcatttgataca |
103 |
Q |
| |
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|||| ||||||||||| ||||||| || ||| |||||| |||| ||| |||| |||||||||| || |||||||||||| |||||||||||| |
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| T |
38029391 |
cacacacaaattgaaatcttcaaaggagcatttttatgccaaattgcgtcaataacttcatcgtgattatgcatctcctgcctcataagcatttgataca |
38029292 |
T |
|
| Q |
104 |
catcgcacaccgtataaccatcagccacatttgggcgccactaccagacatctgtgatggtatcctgtaaagcaacattagaaagtaaagacatacaatc |
203 |
Q |
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|| | || || || || | ||| ||||||| || ||||||| ||| | ||| || | || ||||| ||| |||||||||||| ||||| ||||| || |
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| T |
38029291 |
caccacagactgtgtatcaatctaccacattaggacgccactgccatatatcagtagtagtttcctgcaaaataacattagaaagcaaagatatacattc |
38029192 |
T |
|
| Q |
204 |
c-ccactagatcctcctctcaaactaacaaccgacgccgcca-ccccaagcttcacctccatccctccaacctaaggaaaatatttccgccaccgtctta |
301 |
Q |
| |
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| || ||| |||||||| ||| | ||| ||| ||||||||| |||||||| || || || ||| ||||||||| || | ||||||||||||||||| |
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| T |
38029191 |
cttcattaggtcctcctcccaagccaaccacctacgccgccacccccaagcatctccaccttcctcccaacctaataaacacatttccgccaccgtcttt |
38029092 |
T |
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| Q |
302 |
tccttat |
308 |
Q |
| |
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||||||| |
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| T |
38029091 |
tccttat |
38029085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 20417218 - 20417085
Alignment:
| Q |
18 |
acaaattgaaaccttcaaatg-aacatatttatgtcaaactgcatcaacaacttcatcgcgactatgcatctcctgcat--------ttgatacacatcg |
108 |
Q |
| |
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||||||||||||||||||| | ||||| | |||| |||||||| ||||||||||||||| | ||||||| |||||| | |||||||||| | |
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| T |
20417218 |
acaaattgaaaccttcaaaaggaacatttgtatgccaaactgcgtcaacaacttcatcgtggttatgcatttcctgcctcataagcattgatacacacca |
20417119 |
T |
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| Q |
109 |
cacaccgtataaccatcagccacatttgggcgcc |
142 |
Q |
| |
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| ||||||||||||||||||||||| ||||||| |
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| T |
20417118 |
cggaccgtataaccatcagccacattagggcgcc |
20417085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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