View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11436_low_14 (Length: 502)
Name: NF11436_low_14
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11436_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 201 - 495
Target Start/End: Complemental strand, 49535189 - 49534898
Alignment:
| Q |
201 |
ggaaacattattatcttttaaaagagtaaactaaaacaatacaagttgtcaataaatttcataccaatatcatcaaccttcttaattctcttgatttagt |
300 |
Q |
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| T |
49535189 |
ggaaacattattatcttttaaaagagtaaactaaaacaatacaagttgtcaataaatttcataccaatatca---accttcttaattctcttgatttagt |
49535093 |
T |
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| Q |
301 |
cgacgaactcctatatttagggacaatgtactgataaaaagtctaatctcattgatggcaacaccagtatgtattacttttctccatgatgcatgggagt |
400 |
Q |
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| T |
49535092 |
cgacgaactcctatatttagggacaatgtactgataaaaagtctaatctcattgatggcaacaccagtatgtattacttttctccatgatgcatgggagt |
49534993 |
T |
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| Q |
401 |
atttattgataagcagctacctgtttcatctcctcctttatgtcaatttcttctttatgatattgtagacttcgtggcacctatgacctatgctt |
495 |
Q |
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| T |
49534992 |
atttattgataagcagctacctgtttcatctcctcctttatgtcaatttcttctttatgatattgtagacttcgtggcacctatgacctatgctt |
49534898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 49535416 - 49535237
Alignment:
| Q |
20 |
gttgagatgaccttgtatcatttccacgatcataaatgaaggatgttaggacatactgtagcatgattttcacacacacaa-aaaaggctcttcacctca |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
49535416 |
gttgagatgaccttgtatcatttccacgatcataaatgaaggatgttaggacatactgtagcatgattttcacacacacaaaaaaaggctcttcacctc- |
49535318 |
T |
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| Q |
119 |
aattatactacatccttcctaaatataagaccctattgaaattcttactttcaaatttttaattctattaatcatttcttta |
200 |
Q |
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| T |
49535317 |
-attatactacatccgtcctaaatataagaccctattgaaattcttactttcaaatttttaactctattaatcattttttta |
49535237 |
T |
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