View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11436_low_16 (Length: 483)
Name: NF11436_low_16
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11436_low_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 12 - 469
Target Start/End: Original strand, 29768771 - 29769228
Alignment:
| Q |
12 |
ataggacaaagccatctcaattaattcccatgcacaacagagtcacccacacaaacttggaaaaacaagtgacagcttcttttcttttcccaaaaccata |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29768771 |
ataggacaaagccatctcaattaattcccatgcacaacagagtcacccacacaaacttggaaaaacaagtgacagcttcttttcttttcccaaaaccata |
29768870 |
T |
|
| Q |
112 |
accaacttcaccgagaaatacggagggcatttccgtcatctcacaccaccctccaccgttcattccatcagaagcataaaaactcaaacatacactcact |
211 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
29768871 |
accaacttcaccgagaaacacggagggcatttccgtcatctcataccaccctccaccgttcattccatcagaagcataaaaacttaaacatacactcgct |
29768970 |
T |
|
| Q |
212 |
ctctcattcttcttctcagaagcgaaatcaaaatccgttagagagagaaaacaaaaatggcagcttccgatggaagcgagtactttgaaatcggatcaat |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
29768971 |
ctctcattcttcttctcagaagcgaaatcaaaatccgttagagagagaaaacaaaaatggcagcttccgatggaagcgagtacttcgaaatcggatcaat |
29769070 |
T |
|
| Q |
312 |
cggaagcgagagttttgcgagagcgtcgaatgcagaatgggtggaggaagacgaagaggagcttcattgggcggcgctttcacgtttaccgtcgcagaaa |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29769071 |
cggaagcgagagttttgcgagagcgtcgaatgcagaatgggtggaggaagacgaagaggagcttcattgggcggcgctttcacgtttaccgtcgcagaaa |
29769170 |
T |
|
| Q |
412 |
cgcatcaactttgccgtcctccgtgcttcatcttcccgtcaaccttcaaaggaaaatg |
469 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29769171 |
cgcatcaacttcgccgtcctccgtgcttcatcttcccgtcaaccttcaaaggaaaatg |
29769228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University