View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11436_low_2 (Length: 797)

Name: NF11436_low_2
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11436_low_2
NF11436_low_2
[»] chr1 (6 HSPs)
chr1 (23-571)||(15219880-15220429)
chr1 (23-571)||(15200898-15201446)
chr1 (568-791)||(15202048-15202274)
chr1 (568-786)||(15192952-15193171)
chr1 (568-791)||(15212950-15213176)
chr1 (647-793)||(34035817-34035966)
[»] chr3 (3 HSPs)
chr3 (28-446)||(27540494-27540913)
chr3 (23-244)||(20305318-20305539)
chr3 (394-448)||(20305686-20305740)
[»] chr4 (1 HSPs)
chr4 (25-383)||(16600251-16600610)
[»] chr6 (1 HSPs)
chr6 (25-448)||(7653331-7653755)
[»] chr5 (1 HSPs)
chr5 (23-448)||(37636045-37636468)
[»] scaffold0741 (1 HSPs)
scaffold0741 (23-244)||(4924-5146)
[»] scaffold0065 (1 HSPs)
scaffold0065 (23-448)||(40707-41130)
[»] chr7 (1 HSPs)
chr7 (24-448)||(26175883-26176302)
[»] chr8 (1 HSPs)
chr8 (134-188)||(15747671-15747725)
[»] chr2 (1 HSPs)
chr2 (389-448)||(12398990-12399049)


Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 23 - 571
Target Start/End: Original strand, 15219880 - 15220429
Alignment:
Q  23 gtaactgtgcccgctacccagacattacacttatccatctttgaagcaaacaaga-tttgtcataacctcttcctagggacatcatgcaccatgctcatg 121  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  15219880 gtaactgtgcccgctgcccagacattacacttatccatctctgaagcaaacaagaatttgtaataacctcttcctagggacatcatgcaccatgctcatg 15219979  T
Q  122 cagtcttacattgcttctgtaatttcgattcaatttcctttgtagagtatggcttctctcctttgtttgaaaccagacgtccccgtaggtttgtcttacc 221  Q
    ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||     
T  15219980 cagccttccattgcttctgtaatttcgattcaatttcctttgtagagtatggcttctctcctttgtttaaaaccagacgtccccgtaggttagtcttaca 15220079  T
Q  222 aaaattcattccacgttcatatatgtcctgtatgannnnnnnactgagtgtttctccaagaatttttggctttggcaaattggcattgggggccatctta 321  Q
    ||||||||||||||||||||||| ||||||| |||       ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  15220080 aaaattcattccacgttcatataggtcctgtgtgattttgttactgagtgtttctccaataattattggctttggcaaattggcattgggggccatctta 15220179  T
Q  322 gtcgaggtcgtgagagcctgtgcaaaagagacagacggcaagacagtttggtcaggcggtggaataacccttgcaactttgggagcgattgcaagagaag 421  Q
    || |||| ||||||||| |||||||||||||||||| ||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15220180 gttgaggccgtgagagcttgtgcaaaagagacagacagcaagacagttggtgcaggcggtggaataacccttgcaactttgggagcgattgcaagagaag 15220279  T
Q  422 acatctcagcctgccaatcaaacatggtgactaagatcggaagcagaaaatcagaaacgttaagagaacaaaaggtgagcaaagaactaattgaattgac 521  Q
    |||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15220280 acatcttagcctgccaatcaaacatggtggctgagatcggaagcagaaaatcagaaacgttaagagaacaaaaggtgagcaaagaactaattgaattgac 15220379  T
Q  522 aagtttcacataagaatactatggaattatgctcaattggaaagaattag 571  Q
    |  |||||||||||||||||||| ||||||||||||||||||||||||||    
T  15220380 agctttcacataagaatactatgaaattatgctcaattggaaagaattag 15220429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 23 - 571
Target Start/End: Original strand, 15200898 - 15201446
Alignment:
Q  23 gtaactgtgcccgctacccagacattacacttatccatctttgaagcaaacaaga-tttgtcataacctcttcctagggacatcatgcaccatgctcatg 121  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  15200898 gtaactgtgcccgctgcccagacattacacttatccatctctgaagcaaacaagaatttgtaataacctcttcctagggacatcatgcaccatgctcatg 15200997  T
Q  122 cagtcttacattgcttctgtaatttcgattcaatttcctttgtagagtatggcttctctcctttgtttgaaaccagacgtccccgtaggtttgtcttacc 221  Q
    ||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||| ||||||||     
T  15200998 cagccttccattgcttctgtaatttcgattcaatttcctttgtagagtatggtttctctcctttgtttaaaaccagaagtccccgtaggtatgtcttaca 15201097  T
Q  222 aaaattcattccacgttcatatatgtcctgtatgannnnnnnactgagtgtttctccaagaatttttggctttggcaaattggcattgggggccatctta 321  Q
    ||||||||||||||||||||||| ||| ||| |||       ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  15201098 aaaattcattccacgttcatataggtcttgtgtgatttttt-actgagtgtttctccaagaattactggctttggcaaattggcattgggggccatctta 15201196  T
Q  322 gtcgaggtcgtgagagcctgtgcaaaagagacagacggcaagacagtttggtcaggcggtggaataacccttgcaactttgggagcgattgcaagagaag 421  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15201197 gtcgaggccgtgagagcctgtgcaaaagagacagacggcaagacagttggtgcaggcggtggaataacccttgcaactttgggagcgattgcaagagaag 15201296  T
Q  422 acatctcagcctgccaatcaaacatggtgactaagatcggaagcagaaaatcagaaacgttaagagaacaaaaggtgagcaaagaactaattgaattgac 521  Q
    |||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  15201297 acatctcagcgtgccaatcaaacatggtggctgagatcggaagcagaaaatcagaaacgttaagagaacaaaaggggagcaaagaattaattgaattgac 15201396  T
Q  522 aagtttcacataagaatactatggaattatgctcaattggaaagaattag 571  Q
    |  |||||||||||||||||||||||||||||||||||||||||||||||    
T  15201397 agctttcacataagaatactatggaattatgctcaattggaaagaattag 15201446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 568 - 791
Target Start/End: Original strand, 15202048 - 15202274
Alignment:
Q  568 ttaggtaacattatcaccgatttgatagctcggcagcagcttcctaacgcatctcactacttccgtatgccagcattgtgcgctcatcttggcatttgca 667  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15202048 ttaggtaacattatcaccgatttgatagctcggcagcagcatcctaacgcatctcactacttccgtatgccagcattgtgcgctcatcttggcatttgca 15202147  T
Q  668 agattgagacaagtttagttaagaaggcagtactgacagccaatgttgtatcgctaattcttccc---cttaatgactctgactcagaaatcagggaaac 764  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||| |||||||||||||||||    
T  15202148 agattgagacaagtttagttaagaaggcagtactgacagccaatgttgtatcgctaattcttccccttcttaatgactctgattcagaaatcagggaaac 15202247  T
Q  765 tgccataagtcttctctttcttctctc 791  Q
    |||||||||||||||||||||| ||||    
T  15202248 tgccataagtcttctctttcttttctc 15202274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 568 - 786
Target Start/End: Original strand, 15192952 - 15193171
Alignment:
Q  568 ttaggtaacattatcaccgatttgatagctcggcagcagcttcctaacgcatctcactacttccgtatgccagcattgtgcgctcatcttggcatttgca 667  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||| |||| ||||||||| | | ||| ||||||||||||||||||||||||||||    
T  15192952 ttaggtaatattatcaccaatttgatagctcggcagcagcttcctaactcatcccactacttctgcaagcctgcattgtgcgctcatcttggcatttgca 15193051  T
Q  668 agattgagacaagtttagttaagaaggcagtactgacagccaatgttgtatcgctaattcttccc---cttaatgactctgactcagaaatcagggaaac 764  Q
    || |||||||| |||||||| ||||||||||||||  |||||||| || ||||||||||||||||   ||| |||||||||||||  |||||||||||||    
T  15193052 agtttgagacaggtttagttcagaaggcagtactggtagccaatggtgcatcgctaattcttccccttcttgatgactctgactc--aaatcagggaaac 15193149  T
Q  765 tgccataagtcttctctttctt 786  Q
    |||||||| |||||||||||||    
T  15193150 tgccataaatcttctctttctt 15193171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 568 - 791
Target Start/End: Original strand, 15212950 - 15213176
Alignment:
Q  568 ttaggtaacattatcaccgatttgatagctcggcagcagcttcctaacgcatctcactacttccgtatgccagcattgtgcgctcatcttggcatttgca 667  Q
    ||||||||||||||  || |||| ||||||| |||| ||||||||||| || | ||||||||||||| ||| ||||||||||||||||||  ||||||||    
T  15212950 ttaggtaacattattgccaatttaatagctccgcagaagcttcctaactcagcccactacttccgtaagcctgcattgtgcgctcatctttccatttgca 15213049  T
Q  668 agattgagacaagtttagttaagaaggcagtactgacagccaatgttgtatcgctaattcttccc---cttaatgactctgactcagaaatcagggaaac 764  Q
    || |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||   ||| | ||||||||||||||||||| ||||||    
T  15213050 agtttgagacaggtttagttaagaaggcagtactggcagccaatgttgtatcgctaattcttccccttcttgaagactctgactcagaaatcaaggaaac 15213149  T
Q  765 tgccataagtcttctctttcttctctc 791  Q
    |||||||| ||||||||||||| ||||    
T  15213150 tgccataattcttctctttcttttctc 15213176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 647 - 793
Target Start/End: Original strand, 34035817 - 34035966
Alignment:
Q  647 gcgctcatcttggcatttgcaagattgagacaagtttagttaagaaggcagtactgacagccaatgttgtatcgctaattcttcc---ccttaatgactc 743  Q
    |||||| |||||||||||||||| | |||||  ||||||| ||||| ||| | ||  ||||||||| |||||| || ||||||||    ||| |||| ||    
T  34035817 gcgctcttcttggcatttgcaagttcgagactggtttagtgaagaaagcaattcttgcagccaatggtgtatctctgattcttccacttcttgatgattc 34035916  T
Q  744 tgactcagaaatcagggaaactgccataagtcttctctttcttctctctc 793  Q
    |||||||||| || | || ||||| ||||  || ||||||||| ||||||    
T  34035917 tgactcagaagtccgagagactgcaataaacctgctctttcttttctctc 34035966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 131; Significance: 2e-67; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 28 - 446
Target Start/End: Original strand, 27540494 - 27540913
Alignment:
Q  28 tgtgcccgctacccagacattacacttatccatctttgaagcaaacaagatttg-tcataacctcttcctagggacatcatgcaccatgctcatgcagtc 126  Q
    |||||||||| |||| |||||||| |||||||||| ||||||||| |||| ||  | |||||||||||| ||||||||||| ||||||| || |||||||    
T  27540494 tgtgcccgctgcccatacattacatttatccatctctgaagcaaagaagaattcataataacctcttccgagggacatcatacaccatgatcctgcagtc 27540593  T
Q  127 ttacattgcttctgtaatttcgattcaatttcctttgtagagtatggcttctctcctttgtttgaaaccagacgtccccgtaggtttgtcttaccaaaat 226  Q
    || || ||||||||||||||| ||||||| ||||||||||| || |  ||||||||||||||| |||||| ||||||||| ||||| |||||||  ||||    
T  27540594 ttccagtgcttctgtaatttcaattcaatctcctttgtagaataggttttctctcctttgtttaaaaccatacgtccccgaaggttcgtcttacagaaat 27540693  T
Q  227 tcattccacgttcatatatgtcctgtatgannnnnnnactgagtgtttctccaagaatttttggctttggcaaattggcattgggggccatcttagtcga 326  Q
    ||||||||||||||||||  |||||| |||       |||  |||||| ||| |||||| ||||| |||||||| ||||||||||| |   ||||   ||    
T  27540694 tcattccacgttcatatagatcctgtgtgattttgatacttggtgtttttcccagaattgttggcgttggcaaaatggcattggggacagacttatgtga 27540793  T
Q  327 ggtcgtgagagcctgtgcaaaagagacagacggcaagacagtttggtcaggcggtggaataacccttgcaactttgggagcgattgcaagagaagacatc 426  Q
    || ||| ||||||| |||||| || |||| ||||||||||| | || |  || ||||   |||| ||||| | || |||||||||| ||||| |||||||    
T  27540794 ggccgtaagagcctttgcaaacgaaacagtcggcaagacagatggggcctgcagtgggggaaccgttgcagcctttggagcgattgaaagagcagacatc 27540893  T
Q  427 tcagcctgccaatcaaacat 446  Q
    ||||||| ||||||||||||    
T  27540894 tcagccttccaatcaaacat 27540913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 23 - 244
Target Start/End: Original strand, 20305318 - 20305539
Alignment:
Q  23 gtaactgtgcccgctacccagacattacacttatccatctttgaagcaaacaagatttg-tcataacctcttcctagggacatcatgcaccatgctcatg 121  Q
    ||||||||||| ||| ||||||||||||| |||||||||| ||||||||| |||| ||  | |||||||||||| || |||||||||| |||||  | |     
T  20305318 gtaactgtgcctgctgcccagacattacatttatccatctctgaagcaaagaagaattcataataacctcttccaagagacatcatgcgccatgaaccta 20305417  T
Q  122 cagtcttacattgcttctgtaatttcgattcaatttcctttgtagagtatggcttctctcctttgtttgaaaccagacgtccccgtaggtttgtcttacc 221  Q
    ||||||| || ||||| ||||||||||||||||| ||||||||||| || |  ||||||||||||||| ||||||||||| |||||||||| |||||||     
T  20305418 cagtcttccagtgcttttgtaatttcgattcaatctcctttgtagaataggctttctctcctttgtttaaaaccagacgt-cccgtaggttggtcttaca 20305516  T
Q  222 aaaattcattccacgttcatata 244  Q
     ||||||||||||||||||||||    
T  20305517 gaaattcattccacgttcatata 20305539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 394 - 448
Target Start/End: Original strand, 20305686 - 20305740
Alignment:
Q  394 gcaactttgggagcgattgcaagagaagacatctcagcctgccaatcaaacatgg 448  Q
    |||||||| ||||||||||  | || |||||||||||||| ||||||||||||||    
T  20305686 gcaacttttggagcgattgagatagcagacatctcagcctaccaatcaaacatgg 20305740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 127; Significance: 4e-65; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 25 - 383
Target Start/End: Original strand, 16600251 - 16600610
Alignment:
Q  25 aactgtgcccgctacccagacattacacttatccatctttgaagcaaacaagatttg-tcataacctcttcctagggacatcatgcaccatgctcatgca 123  Q
    ||||||||||||| || |||||||||| |||||||||| ||||||||| |||| ||  | |||||||||||| ||||||||||||  ||||| ||  |||    
T  16600251 aactgtgcccgctgcctagacattacatttatccatctctgaagcaaagaagaattcataataacctcttccgagggacatcatgtgccatgatcccgca 16600350  T
Q  124 gtcttacattgcttctgtaatttcgattcaatttcctttgtagagtatggcttctctcctttgtttgaaaccagacgtccccgtaggtttgtcttaccaa 223  Q
    ||||| || ||||||||||||||| ||||||| ||||||||||| || || ||||||||||||| | |||||||||||||||| ||||||||||||| ||    
T  16600351 gtcttccagtgcttctgtaatttcaattcaatctcctttgtagaatagggtttctctcctttgtgtaaaaccagacgtccccgaaggtttgtcttacaaa 16600450  T
Q  224 aattcattccacgttcatatatgtcctgtatgannnnnnnactgagtgtttctccaagaatttttggctttggcaaattggcattgggggccatcttagt 323  Q
    ||||||||||| |||||||||  |||||| |||       ||| ||||||||||| | |||| ||||| |||||||| ||||||||||| |   ||||      
T  16600451 aattcattccatgttcatatagatcctgtgtgattttgatacttagtgtttctcccataattgttggcgttggcaaaatggcattggggacagacttatg 16600550  T
Q  324 cgaggtcgtgagagcctgtgcaaaagagacagacggcaagacagtttggtcaggcggtgg 383  Q
     |||| ||| |||||||||||||| || |||| || |||||||| | || ||||||||||    
T  16600551 tgaggccgtaagagcctgtgcaaacgaaacagtcgacaagacagatagggcaggcggtgg 16600610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 1e-58; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 25 - 448
Target Start/End: Complemental strand, 7653755 - 7653331
Alignment:
Q  25 aactgtgcccgctacccagacattacacttatccatctttgaagcaaacaagatttg-tcataacctcttcctagggacatcatgcaccatgctcatgca 123  Q
    ||||||||||||| |||||||| |||| |||||||||| ||||||||| |||| ||  | ||||||||| || ||||||||||||  ||||| || ||||    
T  7653755 aactgtgcccgctgcccagacaatacatttatccatctctgaagcaaagaagaattcataataacctctcccgagggacatcatgtgccatgatcctgca 7653656  T
Q  124 gtcttacattgcttctgtaatttcgattcaatttcctttgtagagtatggcttctctcctttgtttgaaaccagacgtccccgtaggtttgtcttaccaa 223  Q
    ||||| || ||||| | ||||||| ||||||| ||||||||||| ||  | ||||||||||||| | ||||||||| |||||| ||||| |||||||  |    
T  7653655 gtcttccagtgcttatataatttcaattcaatctcctttgtagaatagagtttctctcctttgtgtaaaaccagacatccccgaaggttcgtcttacaga 7653556  T
Q  224 aattcattccacgttcatatatgtcctgtatgannnnnnnactgagtgtttctccaagaatttttggctttggcaaattggcattgggggccatcttagt 323  Q
    ||||||||||| |||||||||  |||||| |||       ||| ||||||||||| | |||| ||||| |||||||| ||||||||||| |   ||||      
T  7653555 aattcattccatgttcatatagatcctgtgtgattttgatacttagtgtttctcccaaaattgttggcgttggcaaaatggcattggggacagacttatg 7653456  T
Q  324 cgaggtcgtgagagcctgtgcaaaagagacagacggcaagacagtttggtcaggcggtggaataacccttgcaactttgggagcgattgcaagagaagac 423  Q
     |||| ||| |||||||||||||| || |||| ||||||||||| | ||  ||||||| |   |  | ||||| | || |||||||||| ||||| ||||    
T  7653455 tgaggccgtaagagcctgtgcaaacgaaacagtcggcaagacagatagggtaggcggtaggggagtcgttgcagcctttggagcgattgaaagagcagac 7653356  T
Q  424 atctcagcctgccaatcaaacatgg 448  Q
    |||||||||| ||||||||||||||    
T  7653355 atctcagccttccaatcaaacatgg 7653331  T

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Target: chr5 (Bit Score: 112; Significance: 3e-56; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 23 - 448
Target Start/End: Original strand, 37636045 - 37636468
Alignment:
Q  23 gtaactgtgcccgctacccagacattacacttatccatctttgaagcaaacaagatttg-tcataacctcttcctagggacatcatgcaccatgctcatg 121  Q
    ||||||||||| ||| ||||||||||||| |||||||||| ||||||||| |||| ||  | |||||||||||| || |||||||||| |||||  | ||    
T  37636045 gtaactgtgcctgctgcccagacattacatttatccatctctgaagcaaagaagaattcataataacctcttccaagagacatcatgcgccatgaacctg 37636144  T
Q  122 cagtcttacattgcttctgtaatttcgattcaatttcctttgtagagtatggcttctctcctttgtttgaaaccagacgtccccgtaggtttgtcttacc 221  Q
    ||||||| || ||||| ||||||||||||||||| ||||||||||| || |  ||||||||||||||| |||||||||||||||||||||| |||||||     
T  37636145 cagtcttccagtgcttttgtaatttcgattcaatctcctttgtagaataggctttctctcctttgtttaaaaccagacgtccccgtaggttggtcttaca 37636244  T
Q  222 aaaattcattccacgttcatatatgtcctgtatgannnnnnnactgagtgtttctccaagaatttttggctttggcaaattggcattgggggccatctta 321  Q
     |||||||||||||||||||||| |  |||| |||       ||| ||||||||||| | |||| ||||  ||||||   || ||||||||||  ||| |    
T  37636245 gaaattcattccacgttcatataggatctgtgtgattttgatacttagtgtttctcccataattgttggtgttggca---tgacattgggggcagtctga 37636341  T
Q  322 gtcgaggtcgtgagagcctgtgcaaaagagacagacggcaagacagtttggtcaggcggtggaataacccttgcaactttgggagcgattgcaagagaag 421  Q
       ||||| || ||||| |||||||| || ||   |||| |||| | | || ||||||||| ||   |  | |||||||| ||||||||||  | || ||    
T  37636342 tgggaggttgtaagagcatgtgcaaacgaaaccttcggcgagaccgatggggcaggcggtgaaagggctgtggcaacttttggagcgattgagatagcag 37636441  T
Q  422 acatctcagcctgccaatcaaacatgg 448  Q
    |||||||||||||||||||||||||||    
T  37636442 acatctcagcctgccaatcaaacatgg 37636468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0741 (Bit Score: 107; Significance: 3e-53; HSPs: 1)
Name: scaffold0741
Description:

Target: scaffold0741; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 23 - 244
Target Start/End: Complemental strand, 5146 - 4924
Alignment:
Q  23 gtaactgtgcccgctacccagacattacacttatccatctttgaagcaaacaagatttg-tcataacctcttcctagggacatcatgcaccatgctcatg 121  Q
    ||||||||||| ||| ||||||||||||| |||||||||| ||||||||| |||| ||  | |||||||||||| || |||||||||| |||||  | ||    
T  5146 gtaactgtgcctgctgcccagacattacatttatccatctctgaagcaaagaagaattcataataacctcttccaagagacatcatgcgccatgaacttg 5047  T
Q  122 cagtcttacattgcttctgtaatttcgattcaatttcctttgtagagtatggcttctctcctttgtttgaaaccagacgtccccgtaggtttgtcttacc 221  Q
    ||||||| || ||||| ||||||||||||||||| ||||||||||| || |  |||||||||||||||  ||||||||||||||||||||| |||||||     
T  5046 cagtcttccagtgcttttgtaatttcgattcaatctcctttgtagaataggctttctctcctttgtttagaaccagacgtccccgtaggttggtcttaca 4947  T
Q  222 aaaattcattccacgttcatata 244  Q
     ||||||||||||||||||||||    
T  4946 gaaattcattccacgttcatata 4924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 96; Significance: 1e-46; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 23 - 448
Target Start/End: Complemental strand, 41130 - 40707
Alignment:
Q  23 gtaactgtgcccgctacccagacattacacttatccatctttgaagcaaacaagatttg-tcataacctcttcctagggacatcatgcaccatgctcatg 121  Q
    |||||||||||  || ||||||||||||| |||||||||| ||||||||| |||| ||  | |||||||||||| || |||||||||| |||||  | ||    
T  41130 gtaactgtgccttctgcccagacattacatttatccatctctgaagcaaagaagaattcataataacctcttccaagagacatcatgcgccatgaacctg 41031  T
Q  122 cagtcttacattgcttctgtaatttcgattcaatttcctttgtagagtatggcttctctcctttgtttgaaaccagacgtccccgtaggtttgtcttacc 221  Q
    ||||||| || ||||| ||||||||||||||||| ||||||||||| || |  |||||||||||| || |||| ||||||||| ||| ||| |||||||     
T  41030 cagtcttccagtgcttttgtaatttcgattcaatctcctttgtagaataggctttctctcctttgcttaaaactagacgtccctgtaagttggtcttaca 40931  T
Q  222 aaaattcattccacgttcatatatgtcctgtatgannnnnnnactgagtgtttctccaagaatttttggctttggcaaattggcattgggggccatctta 321  Q
     |||||||||||||||||||||||| ||||| |||       ||| ||||||||||| | |||| ||||  |||||    || ||||||||||  ||| |    
T  40930 gaaattcattccacgttcatatatggcctgtgtgattttgatacttagtgtttctcccataattgttggtgttggc---ctgacattgggggcagtctga 40834  T
Q  322 gtcgaggtcgtgagagcctgtgcaaaagagacagacggcaagacagtttggtcaggcggtggaataacccttgcaactttgggagcgattgcaagagaag 421  Q
       ||||| || ||||| |||||||| || ||   |||| |||| | | || ||||||||| ||   |  | |||||||| ||||||||||  | || ||    
T  40833 tgggaggttgtaagagcttgtgcaaacgaaaccttcggcgagaccgatggggcaggcggtgaaagggctgtggcaacttttggagcgattgagatagcag 40734  T
Q  422 acatctcagcctgccaatcaaacatgg 448  Q
    |||||||||||||||||||||||||||    
T  40733 acatctcagcctgccaatcaaacatgg 40707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 7e-45; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 24 - 448
Target Start/End: Complemental strand, 26176302 - 26175883
Alignment:
Q  24 taactgtgcccgctacccagacattacacttatccatctttgaagcaaacaagatttg-tcataacctcttcctagggacatcatgcaccatgctcatgc 122  Q
    |||||||||| ||| ||||||||   || |||||||||| ||||||||| |||| ||  | |||||||||||| || |||||||||| |||||  | |||    
T  26176302 taactgtgcctgctgcccagaca---catttatccatctctgaagcaaagaagaattcataataacctcttccaagagacatcatgcgccatgaacctgc 26176206  T
Q  123 agtcttacattgcttctgtaatttcgattcaatttcctttgtagagtatggcttctctcctttgtttgaaaccagacgtccccgtaggtttgtcttacca 222  Q
    |||||| || ||||| ||||||||||||||||| ||||||||||| || |  |||||||| |||||| ||||||||||||||| |||||| |||||||      
T  26176205 agtcttccagtgcttttgtaatttcgattcaatctcctttgtagaataggctttctctccattgtttaaaaccagacgtccccataggttggtcttactg 26176106  T
Q  223 aaattcattccacgttcatatatgtcctgtatgannnnnnnactgagtgtttctccaagaatttttggctttggcaaattggcattgggggccatcttag 322  Q
    |||||||||||||||||||||| |  |||| |||       ||| ||||||||||| | |||| ||||| ||||||   || |||||||| | |||| |     
T  26176105 aaattcattccacgttcatatagggtctgtgtgattttgatacttagtgtttctcccataattgttggcgttggca---tgacattggggacaatctgat 26176009  T
Q  323 tcgaggtcgtgagagcctgtgcaaaagagacagacggcaagacagtttggtcaggcggtggaataacccttgcaactttgggagcgattgcaagagaaga 422  Q
      |||| ||| |||||||||||||| || ||   ||||||||| | | || |||||| || ||      | |||||||| ||||||||||  | || |||    
T  26176008 gggaggccgtaagagcctgtgcaaacgaaaccttcggcaagaccgatggggcaggcgctgaaagggttgtggcaacttttggagcgattgagatagcaga 26175909  T
Q  423 catctcagcctgccaatcaaacatgg 448  Q
    ||||||||||||||||||||||||||    
T  26175908 catctcagcctgccaatcaaacatgg 26175883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 15747671 - 15747725
Alignment:
Q  134 gcttctgtaatttcgattcaatttcctttgtagagtatggcttctctcctttgtt 188  Q
    ||||||||||||| |||||||||||||||||||| || ||||| |||||||||||    
T  15747671 gcttctgtaattttgattcaatttcctttgtagaatagggcttgtctcctttgtt 15747725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 389 - 448
Target Start/End: Original strand, 12398990 - 12399049
Alignment:
Q  389 cccttgcaactttgggagcgattgcaagagaagacatctcagcctgccaatcaaacatgg 448  Q
    |||||||||| |||||||||  |||||||| |||||||||||||||||  ||||||||||    
T  12398990 cccttgcaaccttgggagcggctgcaagagcagacatctcagcctgccggtcaaacatgg 12399049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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