View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11436_low_23 (Length: 447)

Name: NF11436_low_23
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11436_low_23
NF11436_low_23
[»] chr6 (4 HSPs)
chr6 (167-436)||(7641896-7642164)
chr6 (330-416)||(7631131-7631217)
chr6 (179-232)||(22996953-22997006)
chr6 (179-232)||(23791395-23791448)
[»] chr4 (3 HSPs)
chr4 (156-267)||(34290808-34290919)
chr4 (85-135)||(34290726-34290776)
chr4 (209-261)||(34290732-34290784)
[»] chr2 (1 HSPs)
chr2 (156-244)||(41324909-41324997)
[»] chr5 (1 HSPs)
chr5 (167-244)||(5045142-5045219)
[»] chr8 (1 HSPs)
chr8 (103-135)||(41667884-41667916)
[»] chr1 (1 HSPs)
chr1 (152-244)||(17322098-17322190)


Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-119; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 167 - 436
Target Start/End: Original strand, 7641896 - 7642164
Alignment:
Q  167 tgacttcaaaacagaaaaccaatggtagttaactacagttggattttttaatcatttccatatatttctaagaaacaaaagatgtgagaataacatcact 266  Q
    |||||||||||||||||||||||| ||||||||||| |||  ||||||| |||||||| |||||||||||||||||||| || ||||||| |||||||||    
T  7641896 tgacttcaaaacagaaaaccaatgatagttaactaccgttaaattttttgatcatttc-atatatttctaagaaacaaaggacgtgagaacaacatcact 7641994  T
Q  267 cttaaaaattgaggtttgtaaccaaaactaaagtcatttgcaaatgaaaatggtagtggggtgggattagacttaccaaaagtggaagtggcttcaatag 366  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7641995 cttaaaagttgaggttagtaaccaaaactaaagtcatttgcaaatgaaagtggtagtggggtgggattagacttaccaaaagtggaagtggcttcaatag 7642094  T
Q  367 aaatgtcatgccactttgacaaagttgagactctaattgtgattatctcctcacttttcttgctctctct 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7642095 aaatgtcatgccactttgacaaagttgagactctaattgtgattatctcctcacttttcttgctctctct 7642164  T

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Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 330 - 416
Target Start/End: Original strand, 7631131 - 7631217
Alignment:
Q  330 ggattagacttaccaaaagtggaagtggcttcaatagaaatgtcatgccactttgacaaagttgagactctaattgtgattatctcc 416  Q
    |||||||||||||||||||| |||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7631131 ggattagacttaccaaaagttgaagtttcttcaatagaaatgtcatgccactttgacatagttgagactctaattgtgattatctcc 7631217  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 22997006 - 22996953
Alignment:
Q  179 agaaaaccaatggtagttaactacagttggattttttaatcatttccatatatt 232  Q
    |||||||| | |||||||||||||||||||||||||   |||||||||| ||||    
T  22997006 agaaaaccgacggtagttaactacagttggatttttcggtcatttccatgtatt 22996953  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 23791395 - 23791448
Alignment:
Q  179 agaaaaccaatggtagttaactacagttggattttttaatcatttccatatatt 232  Q
    |||||||| | |||||||||||||||||||||||||   |||||||||| ||||    
T  23791395 agaaaaccgacggtagttaactacagttggatttttcggtcatttccatgtatt 23791448  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 156 - 267
Target Start/End: Original strand, 34290808 - 34290919
Alignment:
Q  156 ttaactatcactgacttcaaaacagaaaaccaatggtagttaactacagttggattttttaatcatttccatatatttctaagaaacaaaagatgtgaga 255  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||   |  ||||||   |||||||||||| ||| |||||||||| |||||| |||    
T  34290808 ttaactatcactgacttcaaaacagaaaaccgacggtagttaactaccacttaatttttgggtcatttccatatgtttttaagaaacaatagatgtaaga 34290907  T
Q  256 ataacatcactc 267  Q
    | |||| |||||    
T  34290908 acaacaacactc 34290919  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 135
Target Start/End: Original strand, 34290726 - 34290776
Alignment:
Q  85 gaaagttgatgttctcaaatctattgtttcttagaaacacataaaaatgat 135  Q
    |||||||| |||||||| ||| ||||||||||||||||||||  |||||||    
T  34290726 gaaagttgttgttctcacatccattgtttcttagaaacacatggaaatgat 34290776  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 34290784 - 34290732
Alignment:
Q  209 attttttaatcatttccatatatttctaagaaacaaaagatgtgagaataaca 261  Q
    ||||||| ||||||||||| | ||||||||||||||  |||||||||| ||||    
T  34290784 atttttttatcatttccatgtgtttctaagaaacaatggatgtgagaacaaca 34290732  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 244
Target Start/End: Complemental strand, 41324997 - 41324909
Alignment:
Q  156 ttaactatcactgacttcaaaacagaaaaccaatggtagttaactacagttggattttttaatcatttccatatatttctaagaaacaa 244  Q
    ||||||||||||||||||||| ||||||| |   ||||||||||||| | |||| |||||  | ||||| || | ||||||||||||||    
T  41324997 ttaactatcactgacttcaaagcagaaaatcggcggtagttaactactgctggactttttggtaatttcaatgtgtttctaagaaacaa 41324909  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 244
Target Start/End: Complemental strand, 5045219 - 5045142
Alignment:
Q  167 tgacttcaaaacagaaaaccaatggtagttaactacagttggattttttaatcatttccatatatttctaagaaacaa 244  Q
    ||||||||||||||||||   ||||||||||||||| | |  | |||||| ||||||| || ||| ||||||||||||    
T  5045219 tgacttcaaaacagaaaattgatggtagttaactaccgctaaaatttttagtcatttctatgtatctctaagaaacaa 5045142  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 135
Target Start/End: Original strand, 41667884 - 41667916
Alignment:
Q  103 atctattgtttcttagaaacacataaaaatgat 135  Q
    |||||||||||||||||||||||| ||||||||    
T  41667884 atctattgtttcttagaaacacatgaaaatgat 41667916  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 244
Target Start/End: Complemental strand, 17322190 - 17322098
Alignment:
Q  152 gtaattaactatcactgacttcaaaacagaaaaccaatggtagttaactacagttggattttttaatcatttccatatatttctaagaaacaa 244  Q
    ||||||||||||   || ||| ||| ||||||||||  |||||||||||||   ||  |||||| ||||||||||| | ||||||||||||||    
T  17322190 gtaattaactattgttggctttaaagcagaaaaccagcggtagttaactaccactgagttttttgatcatttccatttgtttctaagaaacaa 17322098  T

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