View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11436_low_24 (Length: 441)

Name: NF11436_low_24
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11436_low_24
NF11436_low_24
[»] chr3 (9 HSPs)
chr3 (21-362)||(50507668-50508008)
chr3 (361-436)||(50509692-50509767)
chr3 (85-256)||(23483133-23483312)
chr3 (85-256)||(31608195-31608374)
chr3 (109-206)||(18167934-18168031)
chr3 (113-255)||(24989750-24989896)
chr3 (137-242)||(41589409-41589509)
chr3 (150-242)||(33393118-33393209)
chr3 (150-215)||(47097654-47097720)
[»] chr8 (11 HSPs)
chr8 (104-362)||(1848357-1848629)
chr8 (112-327)||(32910916-32911140)
chr8 (94-242)||(39713255-39713406)
chr8 (91-242)||(4006425-4006591)
chr8 (85-208)||(35979366-35979490)
chr8 (127-208)||(43576177-43576258)
chr8 (150-215)||(7969381-7969447)
chr8 (91-242)||(44704007-44704173)
chr8 (274-330)||(44953554-44953610)
chr8 (85-215)||(38167778-38167916)
chr8 (270-330)||(35979556-35979616)
[»] chr4 (7 HSPs)
chr4 (21-256)||(15506388-15506630)
chr4 (128-256)||(7818269-7818405)
chr4 (85-208)||(1536828-1536950)
chr4 (85-242)||(37829587-37829759)
chr4 (91-242)||(20292593-20292759)
chr4 (109-155)||(42130988-42131034)
chr4 (128-198)||(7795197-7795268)
[»] chr7 (8 HSPs)
chr7 (85-256)||(41469499-41469679)
chr7 (94-179)||(40524823-40524908)
chr7 (111-316)||(34012732-34012941)
chr7 (111-296)||(21202959-21203152)
chr7 (91-188)||(37544872-37544970)
chr7 (270-330)||(37544791-37544851)
chr7 (138-179)||(22114119-22114160)
chr7 (138-179)||(40525281-40525322)
[»] chr6 (10 HSPs)
chr6 (109-257)||(17314864-17315020)
chr6 (107-215)||(6675217-6675324)
chr6 (111-198)||(26947181-26947268)
chr6 (91-214)||(29880728-29880859)
chr6 (110-164)||(26181103-26181157)
chr6 (124-188)||(14253136-14253201)
chr6 (137-246)||(7082108-7082225)
chr6 (91-146)||(32173000-32173055)
chr6 (216-246)||(8810218-8810248)
chr6 (107-149)||(33659676-33659718)
[»] chr1 (10 HSPs)
chr1 (107-215)||(45926102-45926211)
chr1 (108-188)||(9263495-9263576)
chr1 (113-179)||(51547072-51547138)
chr1 (137-242)||(24527073-24527173)
chr1 (85-242)||(14289555-14289719)
chr1 (137-242)||(32117385-32117497)
chr1 (85-146)||(1702569-1702630)
chr1 (137-215)||(45942122-45942200)
chr1 (150-242)||(3486344-3486435)
chr1 (138-179)||(51546644-51546685)
[»] chr2 (5 HSPs)
chr2 (85-215)||(35006313-35006444)
chr2 (137-215)||(31639864-31639942)
chr2 (91-146)||(16312899-16312954)
chr2 (137-242)||(40658629-40658729)
chr2 (333-362)||(35006196-35006225)
[»] scaffold0570 (1 HSPs)
scaffold0570 (85-256)||(3802-3981)
[»] chr5 (2 HSPs)
chr5 (85-177)||(6733389-6733480)
chr5 (137-215)||(18522729-18522807)


Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 21 - 362
Target Start/End: Original strand, 50507668 - 50508008
Alignment:
Q  21 acacccaaatttacttaatattttacaatagtaccaaaataaccctttcatataannnnnnnnnaaaactttgatttaattaattatcactctaaaattt 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||| ||||||||||||||||||||||    
T  50507668 acacccaaatttacttaatattttacaatagtaccaaaataaccctttcatataatttttttt-aaaactttgatttcattaattatcactctaaaattt 50507766  T
Q  121 catcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaaagtgaatcataacatcttttatccatacttgattgctaagt 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  50507767 catcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaaagtgaatcataacatctttcatccatacttgattgctaagt 50507866  T
Q  221 gaatttcttcttctttttcaatgatgttagagtttcaannnnnnngttattgttcaacattgatatgttatgcactgtgcaatgacagttatttgatggt 320  Q
    ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  50507867 gaatttcttcttctttttcaatgatgttagagtttcaatttttttgttattgttcaacattgatatgttatgcacagtgcaatgacagttatttgatggt 50507966  T
Q  321 gcaacacgcaagcgttaatttacattgttgaggttaacttaa 362  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  50507967 gcaacacgcaagcgttaatttaaattgttgaggttaacttaa 50508008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 361 - 436
Target Start/End: Original strand, 50509692 - 50509767
Alignment:
Q  361 aatccaccactaacttgcgatctaatttcccaagccataacatggcctctctcttaatcccaatgtctctgcttct 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50509692 aatccaccactaacttgcgatctaatttcccaagccataacatggcctctctcttaatcccaatgtctctgcttct 50509767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 85 - 256
Target Start/End: Complemental strand, 23483312 - 23483133
Alignment:
Q  85 aaaactttgatttaattaattatcactctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaa-agtg 183  Q
    ||||| ||||||| ||| ||| |||||||||||||||| || ||||| |||||||||||| ||| ||| ||||||||||| | |||||||||||| ||||    
T  23483312 aaaaccttgatttcattcattgtcactctaaaatttcacccgctttcccccacaaacaattatggatggtcaatcaatctatatagaagattaaagagtg 23483213  T
Q  184 aatcataacatcttttatccatacttgattgc-------taagtgaatttcttcttctttttcaatgatgttagagtttc 256  Q
    ||||| |||||||||  ||||||||  |||||       ||| ||||||||||||||||||||| ||||| |||||||||    
T  23483212 aatcaaaacatctttcgtccatactctattgcatataaataattgaatttcttcttctttttcattgatgctagagtttc 23483133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 85 - 256
Target Start/End: Complemental strand, 31608374 - 31608195
Alignment:
Q  85 aaaactttgatttaattaattatcactctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaa-agtg 183  Q
    ||||| ||||||| ||| |||||| |||||||||||||   |||||||||||  |||||||||| ||||||||||||||| | |||||||||||| | |     
T  31608374 aaaaccttgatttcattcattatcgctctaaaatttcactatctttcacccaggaacaatcatggatgttcaatcaatctctatagaagattaaagaata 31608275  T
Q  184 aatcataacatcttttatccatacttgattgc-------taagtgaatttcttcttctttttcaatgatgttagagtttc 256  Q
    ||||| | ||||||| |||||||||| |||||       |||||||||||||||||||||| |||||||| |||||||||    
T  31608274 aatcaaagcatctttcatccatactttattgcatataagtaagtgaatttcttcttcttttccaatgatgctagagtttc 31608195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 109 - 206
Target Start/End: Original strand, 18167934 - 18168031
Alignment:
Q  109 actctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaaagtgaatcataacatcttttatccata 206  Q
    |||||||||||||| ||||||||||||||||| ||||||| ||||||||||||| | | || |||||||||||||||||| | ||||||| |||||||    
T  18167934 actctaaaatttcaccctctttcacccacaaagaatcatggatgttcaatcaatttatataaaagattaaaagtgaatcaaagcatctttcatccata 18168031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 113 - 255
Target Start/End: Original strand, 24989750 - 24989896
Alignment:
Q  113 taaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaa-agtgaatcataacatcttttatccatacttg- 210  Q
    ||||||||||||| ||||||| ||| |||||||||  ||||||||||||||| | |||||||||||| ||| ||||| | ||||||| | | |||||||     
T  24989750 taaaatttcatccactttcactcacgaacaatcatagatgttcaatcaatctctatagaagattaaagagttaatcaaagcatctttcaacgatacttgc 24989849  T
Q  211 --attgctaagtgaatttcttcttctttttcaatgatgttagagttt 255  Q
      ||   ||||| ||||||||||||||||||||||||| | ||||||    
T  24989850 atatatgtaagtaaatttcttcttctttttcaatgatgctggagttt 24989896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 41589509 - 41589409
Alignment:
Q  137 caaacaatcatgaatgttcaatcaatctttgtagaagattaaa-agtgaatcataacatcttttatccatacttgattgctaagtgaatttcttcttctt 235  Q
    ||||||||| ||| |||||||||||||| | | |||||||||| ||||||||| ||||||||| ||||||||| || |||     |||||||||||||||    
T  41589509 caaacaatcctga-tgttcaatcaatctctatggaagattaaagagtgaatcaaaacatctttcatccatactcgactgc-----gaatttcttcttctt 41589416  T
Q  236 tttcaat 242  Q
    |||||||    
T  41589415 tttcaat 41589409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 242
Target Start/End: Complemental strand, 33393209 - 33393118
Alignment:
Q  150 atgttcaatcaatctttgt---agaagattaaa-agtgaatcataacatcttttatccatacttgattgctaagtgaatttcttcttctttttcaat 242  Q
    ||||||||||||||| |||   ||||||||||| ||||||||| ||||| ||| ||||||||| ||||||     ||||||||||||||||||||||    
T  33393209 atgttcaatcaatctctgttatagaagattaaagagtgaatcaaaacatttttcatccatactcgattgc-----gaatttcttcttctttttcaat 33393118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 47097654 - 47097720
Alignment:
Q  150 atgttcaatcaatctttgtagaagattaaa-agtgaatcataacatcttttatccatacttgattgc 215  Q
    ||||||||||||||||| | |||||||||| | ||||||| |||| |||| ||||||||||||||||    
T  47097654 atgttcaatcaatctttatggaagattaaagaatgaatcaaaacacctttcatccatacttgattgc 47097720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 9e-37; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 104 - 362
Target Start/End: Original strand, 1848357 - 1848629
Alignment:
Q  104 ttatcactctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaa-agtgaatcataacatcttttatc 202  Q
    |||||||| ||||| |||| ||||||||| || || ||||||||| ||||||||||||| ||| |||||||||||| |||| |||| ||||| ||| |||    
T  1848357 ttatcactttaaaacttcaccctctttcatccgcagacaatcatggatgttcaatcaatatttatagaagattaaagagtggatcaaaacatatttcatc 1848456  T
Q  203 catacttgattgc-------taagtgaatttcttcttctttttcaatgatgttagagtttcaannnnnnngttattgttcaacattgatatgttatgcac 295  Q
    |||||||||||||       ||| ||| ||||||||||||||||||||||| ||||||||||         || ||||||||| ||||||||||| || |    
T  1848457 catacttgattgcatataagtaaatgagtttcttcttctttttcaatgatgctagagtttcattttttatcttgttgttcaacgttgatatgttacgccc 1848556  T
Q  296 tgtgcaatgacagttatttgatggtgcaacacgcaagcg------ttaatttacattgttgaggttaacttaa 362  Q
    | | ||| ||| |||||||||||||||||||| || |||      ||||||||||| ||||||||||||||||    
T  1848557 tttacaacgacggttatttgatggtgcaacacacatgcgttaacattaatttacatcgttgaggttaacttaa 1848629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 327
Target Start/End: Complemental strand, 32911140 - 32910916
Alignment:
Q  112 ctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaaag---tgaatcataacatcttttatccatact 208  Q
    |||||||||||| |||||||| ||| ||||||||||  |||||||||||||||    | || |||||||    ||||||| ||||||||| || ||||||    
T  32911140 ctaaaatttcattctctttcatccaaaaacaatcatcgatgttcaatcaatctcgacaaaaaattaaaaaaaatgaatcaaaacatctttcattcatact 32911041  T
Q  209 tgattgc-------taagtgaatttcttcttctttttcaatgatgttagagtttcaannnnnnngttattgttcaacattgatatgttatgcactgtgca 301  Q
      |||||       |||||||||||||||||  | |||||||||||| ||||||| |        || ||||||||||||||||||||||| ||| | |     
T  32911040 ctattgcatataagtaagtgaatttcttctttatattcaatgatgtttgagtttctattttttc-ttgttgttcaacattgatatgttatgaactctacg 32910942  T
Q  302 atgacagttatttgatggtgcaacac 327  Q
    ||||| ||||||||||||||||||||    
T  32910941 atgacggttatttgatggtgcaacac 32910916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 94 - 242
Target Start/End: Complemental strand, 39713406 - 39713255
Alignment:
Q  94 atttaattaattatcactctaaaatttcatcctctttcacccacaaac--------aatcatgaatgttcaatcaatctttgtagaagattaaa-agtga 184  Q
    |||| ||||||| ||||||||||||||||  |||||||||||||||||        |||||||| ||||||||||||   | | |||||||||| |||||    
T  39713406 atttcattaattgtcactctaaaatttcaatctctttcacccacaaacgatcaaacaatcatga-tgttcaatcaattcctatggaagattaaagagtga 39713308  T
Q  185 atcataacatcttttatccatacttgattgctaagtgaatttcttcttctttttcaat 242  Q
    |||| ||||||||| ||||||||| ||||||     ||||||||||||||||||||||    
T  39713307 atcaaaacatctttcatccatactcgattgc-----gaatttcttcttctttttcaat 39713255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 91 - 242
Target Start/End: Complemental strand, 4006591 - 4006425
Alignment:
Q  91 ttgatttaattaattatcactctaaaatttcatcctctttcaccca--------caaacaatcatgaatgttcaatcaatctttgtagaagattaaa-ag 181  Q
    ||||||| ||||||| ||||||||||||||||  ||||||||||||        |||||||||||| ||||||||| |||||   | |||||||||| ||    
T  4006591 ttgatttcattaattgtcactctaaaatttcactctctttcacccaccaacgatcaaacaatcatg-atgttcaattaatctcaatggaagattaaagag 4006493  T
Q  182 tgaatcataacatcttttatccatacttgattgc-------taagtgaatttcttcttctttttcaat 242  Q
    ||||||| ||||||||| || |||||| ||||||       ||||||||||| |||||||||||||||    
T  4006492 tgaatcaaaacatctttcattcatactcgattgcatataaataagtgaattttttcttctttttcaat 4006425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 85 - 208
Target Start/End: Original strand, 35979366 - 35979490
Alignment:
Q  85 aaaactttgatttaattaattatcactctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaa-agtg 183  Q
    ||||| ||||||| ||| ||| |  ||||||||||||| ||| || |||||||||| ||||||| ||||||||||||||| |  | ||||||||| | ||    
T  35979366 aaaaccttgatttcattcattgttgctctaaaatttcacccttttacacccacaaataatcatggatgttcaatcaatctctaaaaaagattaaagactg 35979465  T
Q  184 aatcataacatcttttatccatact 208  Q
    ||||| || |||||| |||||||||    
T  35979466 aatcaaaatatctttcatccatact 35979490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 43576177 - 43576258
Alignment:
Q  127 ctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaaagtgaatcataacatcttttatccatact 208  Q
    |||||| ||||||||||||||| |||||||| ||||||   || || | ||||||||||||| ||||||||| |||||||||    
T  43576177 ctttcatccacaaacaatcatggatgttcaaccaatctccataaaataataaaagtgaatcaaaacatctttcatccatact 43576258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 7969381 - 7969447
Alignment:
Q  150 atgttcaatcaatctttgtagaagattaaa-agtgaatcataacatcttttatccatacttgattgc 215  Q
    ||||||||||||||| | | |||||||||| ||||||||| ||| ||||| ||||||||||||||||    
T  7969381 atgttcaatcaatctctatggaagattaaagagtgaatcaaaacttctttcatccatacttgattgc 7969447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 242
Target Start/End: Original strand, 44704007 - 44704173
Alignment:
Q  91 ttgatttaattaattatcactctaaaatttcatcctctttcaccca--------caaacaatcatgaatgttcaatcaatctttgtagaagattaaa-ag 181  Q
    ||||||| ||| ||||||||||||||||||||  ||||||||||||        ||||||||| || ||||||||| ||||| | | |||||||||| ||    
T  44704007 ttgatttcattcattatcactctaaaatttcactctctttcacccaccaacgaccaaacaatcctg-atgttcaattaatctctatggaagattaaagag 44704105  T
Q  182 tgaatcataacatcttttatccatacttgattgc-------taagtgaatttcttcttctttttcaat 242  Q
     |||||| ||||||||| || |||||  ||||||       ||||||||||| |||||||||||||||    
T  44704106 cgaatcaaaacatctttcattcatacccgattgcatataaataagtgaattttttcttctttttcaat 44704173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 330
Target Start/End: Complemental strand, 44953610 - 44953554
Alignment:
Q  274 tcaacattgatatgttatgcactgtgcaatgacagttatttgatggtgcaacacgca 330  Q
    ||||| ||||||||||||| ||| | ||| ||| |||||||||||||||||||||||    
T  44953610 tcaacgttgatatgttatgaactttacaacgacggttatttgatggtgcaacacgca 44953554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 215
Target Start/End: Original strand, 38167778 - 38167916
Alignment:
Q  85 aaaactttgatttaattaattatcactctaaaatttcatcctctttcaccca--------caaacaatcatgaatgttcaatcaatctttgtagaagatt 176  Q
    |||| |||||||| ||| ||| ||||||||||||||||  ||||||||||||        ||||||||| || ||||||||| ||||| | | |||||||    
T  38167778 aaaaatttgatttcattcattgtcactctaaaatttcactctctttcacccaccaacgatcaaacaatcctg-atgttcaattaatctctatggaagatt 38167876  T
Q  177 aaa-agtgaatcataacatcttttatccatacttgattgc 215  Q
    ||| ||| ||||| ||||||||| || |||||| ||||||    
T  38167877 aaagagtcaatcaaaacatctttcattcatactcgattgc 38167916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 330
Target Start/End: Original strand, 35979556 - 35979616
Alignment:
Q  270 ttgttcaacattgatatgttatgcactgtgcaatgacagttatttgatggtgcaacacgca 330  Q
    ||||||||| ||||||||||||| ||| | |||| |  | |||||||||||||||||||||    
T  35979556 ttgttcaacgttgatatgttatgaactctacaatcaaggctatttgatggtgcaacacgca 35979616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 21 - 256
Target Start/End: Complemental strand, 15506630 - 15506388
Alignment:
Q  21 acacccaaatttacttaatattttacaatagtaccaaaataaccctttcatataannnnnnnnnaaaactttgatttaattaattatcactctaaaattt 120  Q
    |||||||||||||||||| |||||| |||| ||| |||||  |||||| ||||||         ||||| ||||||| ||| ||| ||||||||||||||    
T  15506630 acacccaaatttacttaaaattttataataatacaaaaattgcccttttatataaattttctt-aaaacattgatttcattcattgtcactctaaaattt 15506532  T
Q  121 ca-tcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaa-agtgaatcataacatcttttatccatacttgattgc--- 215  Q
    || |||| |||||||||||||||||||| |||||||  ||||||||| |||||||||||| ||||||||| ||||||||| || ||||||  |||||       
T  15506531 cactcct-tttcacccacaaacaatcattaatgttcggtcaatctttatagaagattaaagagtgaatcaaaacatctttcattcatactctattgcata 15506433  T
Q  216 ----taagtgaatttcttcttctttttcaatgatgttagagtttc 256  Q
        ||| ||||||||||||||||||||||||||| |||||||||    
T  15506432 taagtaattgaatttcttcttctttttcaatgatgctagagtttc 15506388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 128 - 256
Target Start/End: Complemental strand, 7818405 - 7818269
Alignment:
Q  128 tttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaa-agtgaatcataacatcttttatccatacttgattgc-------taag 219  Q
    ||||||||||||||||||||||||||||| ||||| | | || ||||||||| ||||||||  ||||||||| ||| |||||  | |||       |||     
T  7818405 tttcacccacaaacaatcatgaatgttcagtcaatttctataaaagattaaagagtgaatcgaaacatctttcatctatactctaatgcatataagtaat 7818306  T
Q  220 tgaatttcttcttctttttcaatgatgttagagtttc 256  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  7818305 tgaatttctccttctttttcaatgatgctagagtttc 7818269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 85 - 208
Target Start/End: Complemental strand, 1536950 - 1536828
Alignment:
Q  85 aaaactttgatttaattaattatcactctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaa-agtg 183  Q
    ||||| || |||| ||| ||| || |||||||| |||| ||| ||||||||||||| ||||||| |||||||||||||| |  |||||||||||| ||||    
T  1536950 aaaaccttaatttcattcattgtcgctctaaaacttcaccctatttcacccacaaa-aatcatggatgttcaatcaatc-tcatagaagattaaagagtg 1536853  T
Q  184 aatcataacatcttttatccatact 208  Q
    ||| | ||||||||| |||||||||    
T  1536852 aattaaaacatctttcatccatact 1536828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 85 - 242
Target Start/End: Complemental strand, 37829759 - 37829587
Alignment:
Q  85 aaaactttgatttaattaattatcactctaaaatttcatcctctttcacccacaaacaatc-----atga--atgttcaatcaatctttgtagaagatta 177  Q
    |||| |||||||| ||| ||||||||||||||||||||  ||||||||||||| |||||||     || |  ||||||||| ||||| | | ||||||||    
T  37829759 aaaattttgatttcattcattatcactctaaaatttcactctctttcacccaccaacaatcaaacaataaagatgttcaattaatctctatggaagatta 37829660  T
Q  178 aa-agtgaatcataacatcttttatccatacttgattgc-------taagtgaatttcttcttctttttcaat 242  Q
    || ||||||||| ||||||||| || ||||||  |||||       ||||||||||| |||||||||||||||    
T  37829659 aagagtgaatcaaaacatctttcattcatactcaattgcatataaataagtgaattttttcttctttttcaat 37829587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 91 - 242
Target Start/End: Original strand, 20292593 - 20292759
Alignment:
Q  91 ttgatttaattaattatcactctaaaatttcatcctctttcaccca--------caaacaatcatgaatgttcaatcaatctttgtagaagattaaa-ag 181  Q
    ||||||| ||| ||||||||| ||||||| ||||||||||||||||        ||||||||| || || |||||| ||||| | | |||||||||| ||    
T  20292593 ttgatttcattcattatcactataaaattccatcctctttcacccaccaaggatcaaacaatcctg-atattcaattaatctctatggaagattaaagag 20292691  T
Q  182 tgaatcataacatcttttatccatacttgattgc-------taagtgaatttcttcttctttttcaat 242  Q
    ||||||| ||||||||| || |||||| ||||||       ||||||||||| |||||||||||||||    
T  20292692 tgaatcaaaacatctttcattcatactcgattgcatataaataagtgaattttttcttctttttcaat 20292759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 155
Target Start/End: Original strand, 42130988 - 42131034
Alignment:
Q  109 actctaaaatttcatcctctttcacccacaaacaatcatgaatgttc 155  Q
    |||||||||||||||| ||||||||| ||||||||||| ||||||||    
T  42130988 actctaaaatttcatcatctttcacctacaaacaatcacgaatgttc 42131034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 198
Target Start/End: Complemental strand, 7795268 - 7795197
Alignment:
Q  128 tttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaa-agtgaatcataacatcttt 198  Q
    ||||||||||||||||||||||||||||| ||||| | | || |||| |||| ||||||||  |||||||||    
T  7795268 tttcacccacaaacaatcatgaatgttcagtcaatttctataaaagaataaagagtgaatcgaaacatcttt 7795197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 85 - 256
Target Start/End: Original strand, 41469499 - 41469679
Alignment:
Q  85 aaaactttgatttaattaattatcactctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaa-agtg 183  Q
    ||||||||||||| ||| ||| | |||||||||||| | ||||||||||  ||||||||| ||||||||||||||||||| | ||||||||||||  |||    
T  41469499 aaaactttgatttcattcattgttactctaaaattttaccctctttcacatacaaacaattatgaatgttcaatcaatctctatagaagattaaagggtg 41469598  T
Q  184 aatcataacatcttttatccatacttgattgc-------taagtgaatttcttcttctttttc-aatgatgttagagtttc 256  Q
    ||||| ||||||||| ||||||| | | ||||       |||||||||||||||||||||||| ||||||| |||||||||    
T  41469599 aatcaaaacatctttcatccatattcggttgcatataaataagtgaatttcttcttctttttcaaatgatgctagagtttc 41469679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 94 - 179
Target Start/End: Complemental strand, 40524908 - 40524823
Alignment:
Q  94 atttaattaattatcactctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaa 179  Q
    ||||| || |||||| ||||||||||||| | | ||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  40524908 atttatttcattatcgctctaaaatttcaccatttttcacccacaaacaatcatggatgttcaatcaatctctgtagaagattaaa 40524823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 111 - 316
Target Start/End: Original strand, 34012732 - 34012941
Alignment:
Q  111 tctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaa-agtgaatcataacatcttttatccatactt 209  Q
    ||||||||||||||| ||| |||||||||||||||||  ||||||||||||||| | || ||||||||| ||||||||| ||||||||  ||||||| |     
T  34012732 tctaaaatttcatccgcttacacccacaaacaatcatagatgttcaatcaatctctataaaagattaaagagtgaatcaaaacatcttccatccatattc 34012831  T
Q  210 gattgc---taagtgaatttcttcttctttttcaatgatgttagagtttcaannnnnnngttattgttcaacattgatatgttatgcactgtgcaatgac 306  Q
     |||||   |||||   ||| ||  | | ||||||||||||||||||||| |        || ||||||||| ||||||||||||| ||| | ||| |||    
T  34012832 tattgcatataagtacgtttttttctttctttcaatgatgttagagtttctatttttttcttgttgttcaacgttgatatgttatgaactctacaacgac 34012931  T
Q  307 agttatttga 316  Q
    ||||||||||    
T  34012932 agttatttga 34012941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 111 - 296
Target Start/End: Original strand, 21202959 - 21203152
Alignment:
Q  111 tctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaa-agtgaatcataacatcttttatccatactt 209  Q
    ||||||||||||  || ||||||||||||||||||||| | ||||||||||||| | ||||| |||||| | | ||||| ||||||||| ||| |||||     
T  21202959 tctaaaatttcacactatttcacccacaaacaatcatggacgttcaatcaatctctatagaatattaaataataaatcaaaacatctttcatctatactc 21203058  T
Q  210 gattgc-------taagtgaatttcttcttctttttcaatgatgttagagtttcaannnnnnngttattgttcaacattgatatgttatgcact 296  Q
     |||||       ||| |||||||||| ||||||||||||||||  |||||||| |        || ||||||||| |||||||||||||||||    
T  21203059 tattgcatataagtaattgaatttcttattctttttcaatgatgcaagagtttctattttattcttgttgttcaacgttgatatgttatgcact 21203152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 91 - 188
Target Start/End: Complemental strand, 37544970 - 37544872
Alignment:
Q  91 ttgatttaattaattatcactctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaa-agtgaatca 188  Q
    ||||||| ||| ||| | |||||||||||||| ||||||||||||| ||||||| ||| ||||||||||||||  | || ||||||||| |||||||||    
T  37544970 ttgatttcattcattgttactctaaaatttcaccctctttcacccataaacaattatggatgttcaatcaatcactataaaagattaaagagtgaatca 37544872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 330
Target Start/End: Complemental strand, 37544851 - 37544791
Alignment:
Q  270 ttgttcaacattgatatgttatgcactgtgcaatgacagttatttgatggtgcaacacgca 330  Q
    ||||||||| ||||||||||||| ||| | ||| ||| |||||||||||||||| ||||||    
T  37544851 ttgttcaacgttgatatgttatgaactctacaacgacggttatttgatggtgcagcacgca 37544791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 22114160 - 22114119
Alignment:
Q  138 aaacaatcatgaatgttcaatcaatctttgtagaagattaaa 179  Q
    ||||||||||| ||||||||||||||| | ||||||||||||    
T  22114160 aaacaatcatggatgttcaatcaatctctatagaagattaaa 22114119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 40525281 - 40525322
Alignment:
Q  138 aaacaatcatgaatgttcaatcaatctttgtagaagattaaa 179  Q
    ||||||||||| ||||||||||||||| | ||||||||||||    
T  40525281 aaacaatcatggatgttcaatcaatctctatagaagattaaa 40525322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 109 - 257
Target Start/End: Complemental strand, 17315020 - 17314864
Alignment:
Q  109 actctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaa-agtgaatcataacatcttttatccatac 207  Q
    ||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||| || | ||||||| ||||||||| ||||| ||| ||||||||    
T  17315020 actctaaaatttcactctctttcagccacaaacaatcatgaatgttcaatcaatctttataaaggattaaagagtgaatcaaaacatatttcatccatac 17314921  T
Q  208 ttgattgc-------taagtgaatttcttcttctttttcaatgatgttagagtttca 257  Q
    |  |||||       ||| |||||||||||||||||||||||||||  |||||||||    
T  17314920 tctattgcatataagtaactgaatttcttcttctttttcaatgatgcaagagtttca 17314864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 107 - 215
Target Start/End: Original strand, 6675217 - 6675324
Alignment:
Q  107 tcactctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaa-agtgaatcataacatcttttatccat 205  Q
    |||||||||||||| |  |||||||||| ||||| ||||||| ||||||||||||||| | |||||||||||| ||||||||| ||||||||| ||||||    
T  6675217 tcactctaaaatttta--ctctttcaccaacaaataatcatggatgttcaatcaatctctatagaagattaaagagtgaatcaaaacatctttcatccat 6675314  T
Q  206 acttgattgc 215  Q
    ||| ||||||    
T  6675315 actcgattgc 6675324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 111 - 198
Target Start/End: Original strand, 26947181 - 26947268
Alignment:
Q  111 tctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagatt-aaaagtgaatcataacatcttt 198  Q
    ||||||||||||  |||||||||||||||||||||||| || |||||||||||| | ||||||||| || ||||||||| |||||||||    
T  26947181 tctaaaatttcactctctttcacccacaaacaatcatggat-ttcaatcaatctctatagaagattgaagagtgaatcaaaacatcttt 26947268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 91 - 214
Target Start/End: Original strand, 29880728 - 29880859
Alignment:
Q  91 ttgatttaattaattatcactctaaaatttcatcctctttcaccca--------caaacaatcatgaatgttcaatcaatctttgtagaagattaaa-ag 181  Q
    ||||||| ||||||| ||||||||||||| ||| ||||||||||||        ||||||||| ||| |||||||| ||||||| | |||||||||| ||    
T  29880728 ttgatttcattaattgtcactctaaaattccattctctttcacccatcaacgatcaaacaatcctga-tgttcaattaatctttatggaagattaaagag 29880826  T
Q  182 tgaatcataacatcttttatccatacttgattg 214  Q
    ||||||| |||||||||||| |||||| |||||    
T  29880827 tgaatcaaaacatcttttattcatactcgattg 29880859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 110 - 164
Target Start/End: Original strand, 26181103 - 26181157
Alignment:
Q  110 ctctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatct 164  Q
    ||||||| |||||  ||||||||||||||||||||||||||||||||||||||||    
T  26181103 ctctaaactttcactctctttcacccacaaacaatcatgaatgttcaatcaatct 26181157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 14253136 - 14253201
Alignment:
Q  124 cctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaa-agtgaatca 188  Q
    ||||||||||||||||||||||||| ||||||||||||||| | || ||||||||| |||||||||    
T  14253136 cctctttcacccacaaacaatcatggatgttcaatcaatctctataaaagattaaagagtgaatca 14253201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 137 - 246
Target Start/End: Complemental strand, 7082225 - 7082108
Alignment:
Q  137 caaacaatcatgaatgttcaatcaatctttgtagaagattaaa-agtgaatcataacatcttttatccatacttgattgc-------taagtgaatttct 228  Q
    |||||||||||  |||||||||||||||   | |||||||||| ||||||||| || |||| | ||||| ||| ||||||       |||||||||||||    
T  7082225 caaacaatcatccatgttcaatcaatctacatggaagattaaagagtgaatcaaaatatctctcatccaaactcgattgcatataagtaagtgaatttct 7082126  T
Q  229 tcttctttttcaatgatg 246  Q
    ||||||||||||||||||    
T  7082125 tcttctttttcaatgatg 7082108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 32173000 - 32173055
Alignment:
Q  91 ttgatttaattaattatcactctaaaatttcatcctctttcacccacaaacaatca 146  Q
    ||||||| ||| ||| ||||||||||||||||  |||||||||||| |||||||||    
T  32173000 ttgatttcattcattgtcactctaaaatttcactctctttcacccagaaacaatca 32173055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 246
Target Start/End: Original strand, 8810218 - 8810248
Alignment:
Q  216 taagtgaatttcttcttctttttcaatgatg 246  Q
    |||||||||||||||||||||||||||||||    
T  8810218 taagtgaatttcttcttctttttcaatgatg 8810248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 33659676 - 33659718
Alignment:
Q  107 tcactctaaaatttcatcctctttcacccacaaacaatcatga 149  Q
    |||||||||| ||||| |||||||||||||||| |||||||||    
T  33659676 tcactctaaactttcaacctctttcacccacaagcaatcatga 33659718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 107 - 215
Target Start/End: Complemental strand, 45926211 - 45926102
Alignment:
Q  107 tcactctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagatt-aaaagtgaatcataacatcttttatccat 205  Q
    ||||||| ||||| || |||||||||||| |||||||||||| ||||||||||||||| | ||||||||| || ||||||||| ||||||||| ||||||    
T  45926211 tcactctcaaattgcaccctctttcacccgcaaacaatcatgtatgttcaatcaatctctatagaagattgaagagtgaatcaaaacatctttcatccat 45926112  T
Q  206 acttgattgc 215  Q
    ||| ||||||    
T  45926111 actcgattgc 45926102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 108 - 188
Target Start/End: Complemental strand, 9263576 - 9263495
Alignment:
Q  108 cactctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaa-agtgaatca 188  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| | ||||| |||||| |||||||||    
T  9263576 cactctaaaatttcatcatctttcatccacaaacaatcatgaatgttcaatcaatctctatagaatattaaagagtgaatca 9263495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 113 - 179
Target Start/End: Original strand, 51547072 - 51547138
Alignment:
Q  113 taaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaa 179  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||||||| || | ||||||||||||    
T  51547072 taaaatttcaccctctttcacccacaaacaattatggatgttcaatcaagctatatagaagattaaa 51547138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 137 - 242
Target Start/End: Original strand, 24527073 - 24527173
Alignment:
Q  137 caaacaatcatgaatgttcaatcaatctttgtagaagattaaa-agtgaatcataacatcttttatccatacttgattgctaagtgaatttcttcttctt 235  Q
    ||||||||| ||| |||||||||||||||| | |||||||||| ||||||| | ||||||||| ||||||||| || |||     |||||||||||||||    
T  24527073 caaacaatcctga-tgttcaatcaatctttatggaagattaaagagtgaattaaaacatctttcatccatactcgactgc-----gaatttcttcttctt 24527166  T
Q  236 tttcaat 242  Q
    |||||||    
T  24527167 tttcaat 24527173  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 85 - 242
Target Start/End: Original strand, 14289555 - 14289719
Alignment:
Q  85 aaaactttgatttaattaattatcactctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaa-agtg 183  Q
    |||| |||||||| ||| ||| ||||||||||||| ||  |||||||| |||| |||  || || ||||||||| ||||| | | |||||||||| ||||    
T  14289555 aaaattttgatttcatttattgtcactctaaaattccactctctttcatccaccaacgttcctg-atgttcaattaatctctattgaagattaaagagtg 14289653  T
Q  184 aatcataacatcttttatccatacttgattgc-------taagtgaatttcttcttctttttcaat 242  Q
     |||| ||||||||| || |||||| ||||||       ||||||||||| |||||||||||||||    
T  14289654 gatcaaaacatctttcattcatactcgattgcatataaataagtgaattttttcttctttttcaat 14289719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 137 - 242
Target Start/End: Original strand, 32117385 - 32117497
Alignment:
Q  137 caaacaatcatgaatgttcaatcaatctttgtagaagattaaa-agtgaatcataacatcttttatccatacttgattgc-------taagtgaatttct 228  Q
    ||||||||| ||| |||||||| ||||| | | |||||||||| ||||||||| ||||||||| || |||||||||||||       ||||||||||| |    
T  32117385 caaacaatcctga-tgttcaattaatctctatggaagattaaagagtgaatcaaaacatctttcattcatacttgattgcatataaataagtgaattttt 32117483  T
Q  229 tcttctttttcaat 242  Q
    ||||||||||||||    
T  32117484 tcttctttttcaat 32117497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 146
Target Start/End: Complemental strand, 1702630 - 1702569
Alignment:
Q  85 aaaactttgatttaattaattatcactctaaaatttcatcctctttcacccacaaacaatca 146  Q
    |||| |||||||| ||| ||| ||||||||||||||||  ||||||||||||| ||||||||    
T  1702630 aaaattttgatttcatttattgtcactctaaaatttcactctctttcacccaccaacaatca 1702569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 45942200 - 45942122
Alignment:
Q  137 caaacaatcatgaatgttcaatcaatctttgtagaagattaaa-agtgaatcataacatcttttatccatacttgattgc 215  Q
    ||||||||| ||| |||||||| ||||| | |||||||||||| ||||||||| ||||||||| || |||||| ||||||    
T  45942200 caaacaatcctga-tgttcaattaatctatatagaagattaaagagtgaatcaaaacatctttaattcatactcgattgc 45942122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 242
Target Start/End: Complemental strand, 3486435 - 3486344
Alignment:
Q  150 atgttcaatcaatctttgta---gaagattaaa-agtgaatcataacatcttttatccatacttgattgctaagtgaatttcttcttctttttcaat 242  Q
    ||||||||||||||| |||    |||||||||| ||||||||| ||||| ||| ||||||||| ||||||     ||||||||||||||||||||||    
T  3486435 atgttcaatcaatctctgttacggaagattaaagagtgaatcaaaacatttttcatccatactcgattgc-----gaatttcttcttctttttcaat 3486344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 51546685 - 51546644
Alignment:
Q  138 aaacaatcatgaatgttcaatcaatctttgtagaagattaaa 179  Q
    ||||||| ||||||||||||||||||| | ||||||||||||    
T  51546685 aaacaattatgaatgttcaatcaatctctatagaagattaaa 51546644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 85 - 215
Target Start/End: Complemental strand, 35006444 - 35006313
Alignment:
Q  85 aaaactttgatttaattaattatcactctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagatt-aaaagtg 183  Q
    ||||| || |||| ||| ||| |||||||||||||||| | ||||||| ||||||||||||||| ||||||||||||||| | ||||||||| || ||||    
T  35006444 aaaaccttaatttcattcattgtcactctaaaatttcaccatctttcatccacaaacaatcatggatgttcaatcaatctctatagaagattgaagagtg 35006345  T
Q  184 aatcataacatcttttatccatacttgattgc 215  Q
    ||||| ||||||||| ||| ||| | ||||||    
T  35006344 aatcaaaacatctttcatctatattcgattgc 35006313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 31639864 - 31639942
Alignment:
Q  137 caaacaatcatgaatgttcaatcaatctttgtagaagattaaa-agtgaatcataacatcttttatccatacttgattgc 215  Q
    ||||||||| ||| |||||||||||||| | | |||||||||| ||||||||| ||||||||| ||||||||| ||||||    
T  31639864 caaacaatcctga-tgttcaatcaatctctatggaagattaaagagtgaatcaaaacatctttcatccatactcgattgc 31639942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 16312899 - 16312954
Alignment:
Q  91 ttgatttaattaattatcactctaaaatttcatcctctttcacccacaaacaatca 146  Q
    ||||||| ||| ||| ||||||||||||||||| ||||||||||||| ||| ||||    
T  16312899 ttgatttcattcattgtcactctaaaatttcattctctttcacccaccaacgatca 16312954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 242
Target Start/End: Original strand, 40658629 - 40658729
Alignment:
Q  137 caaacaatcatgaatgttcaatcaatctttgtagaagattaaa-agtgaatcataacatcttttatccatacttgattgctaagtgaatttcttcttctt 235  Q
    ||||||||| ||| |||||||||||||| | | |||||||||| ||||||||| || |||||| |||||||||  | |||     |||||||||||||||    
T  40658629 caaacaatcctga-tgttcaatcaatctctatggaagattaaagagtgaatcaaaatatctttcatccatactcaactgc-----gaatttcttcttctt 40658722  T
Q  236 tttcaat 242  Q
    |||||||    
T  40658723 tttcaat 40658729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 362
Target Start/End: Complemental strand, 35006225 - 35006196
Alignment:
Q  333 cgttaatttacattgttgaggttaacttaa 362  Q
    ||||||||||||||||||||||||||||||    
T  35006225 cgttaatttacattgttgaggttaacttaa 35006196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 85 - 256
Target Start/End: Original strand, 3802 - 3981
Alignment:
Q  85 aaaactttgatttaattaattatcactctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagatt-aaaagtg 183  Q
    ||||| ||||||| ||| ||| |||||||||||||||| || |||||| || |||||||| ||| ||| ||||||||||| | ||||||||| |||||||    
T  3802 aaaaccttgatttcattcattgtcactctaaaatttcacccgctttcatccgcaaacaattatggatggtcaatcaatctctatagaagattaaaaagtg 3901  T
Q  184 aatcataacatcttttatccatacttgattgc-------taagtgaatttcttcttctttttcaatgatgttagagtttc 256  Q
    ||||| || ||||||  ||||||||  |||||       ||| ||||||||||||||||||||| |||||  ||||||||    
T  3902 aatcaaaatatctttcgtccatactctattgcatataaataattgaatttcttcttctttttcattgatgcaagagtttc 3981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 85 - 177
Target Start/End: Complemental strand, 6733480 - 6733389
Alignment:
Q  85 aaaactttgatttaattaattatcactctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagatta 177  Q
    ||||| ||||||| ||| ||| |||||||||||||||| | ||||||||||||||| ||| ||||||||||||||||||| | ||||||||||    
T  6733480 aaaaccttgatttcattcattgtcactctaaaatttca-catctttcacccacaaataattatgaatgttcaatcaatctctatagaagatta 6733389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 18522807 - 18522729
Alignment:
Q  137 caaacaatcatgaatgttcaatcaatctttgtagaagattaaa-agtgaatcataacatcttttatccatacttgattgc 215  Q
    ||||||||| ||| |||||||| ||||| | | |||||||||| ||||||||| ||||||||| || |||||||||||||    
T  18522807 caaacaatcctga-tgttcaattaatctatatggaagattaaagagtgaatcaaaacatctttcattcatacttgattgc 18522729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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