View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11436_low_26 (Length: 438)
Name: NF11436_low_26
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11436_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 16 - 427
Target Start/End: Complemental strand, 34986982 - 34986570
Alignment:
| Q |
16 |
caatttcaagaaacttgtcctcccaatttgtggtataagaactgtttgtatcaaaagagacaaatacaagtaatggaagcaattaaaatgcgttattaag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34986982 |
caatttcaagaaacttgtcctcccaatttgtggtataagaactgtttgtatcaaaagagacaaatacaagtaatggaagcaattaaaatgcgttattaag |
34986883 |
T |
|
| Q |
116 |
ataaatacaacgacttaaataacattaagtcgttgcggacttgctattaaaatctcacattatattactaatgtgacaatgtgtaaaacaaataagttat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34986882 |
ataaatacaacgacttaaataacattaagtcgttgcggacttgctattaaaatctcacattatattactaatgtaacaatgtgtaaaacaaataagttat |
34986783 |
T |
|
| Q |
216 |
ttcacgtctcaaaatttggaaaaatttcttcttcttccatctttaggtatgcatgttgagttaaattttgtatgagacaatattcttattagaaatatat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34986782 |
ttcacgtctcaaaatttggaaaaatttcttcttcttccatctttaggtatgcatgatgagttaaattttgtatgagacaatattcttattagaaatatat |
34986683 |
T |
|
| Q |
316 |
ttaacctcctatcaattgtttctcaagcagtatgttcttaattagctctgcatatgcactcttgtgtatgagctctc-cccagctttctaggttctctaa |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
34986682 |
ttaacctcctatcaattgtttctcaagcagtatgttcttaattagctctgcatatgcactcttgtgtatgagctctctcccagctttctaggttctccaa |
34986583 |
T |
|
| Q |
415 |
acatagggttcat |
427 |
Q |
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| T |
34986582 |
acatagggttcat |
34986570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 34995391 - 34995285
Alignment:
| Q |
16 |
caatttcaagaaacttgtcctcccaatttgtggtataagaactgtttgtatcaaaagagacaaatacaagtaatggaagcaattaaaatgcgttattaag |
115 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| || | ||||||| |||||||||||| | ||||| || |
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| T |
34995391 |
caatttcaataaacttgtcctcccaatttgtggtataagaactgtttgtatcaaaagaaacaagtatacgtaatggtagcaattaaaattctttattgag |
34995292 |
T |
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| Q |
116 |
ataaata |
122 |
Q |
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||||||| |
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| T |
34995291 |
ataaata |
34995285 |
T |
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