View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11436_low_27 (Length: 390)

Name: NF11436_low_27
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11436_low_27
NF11436_low_27
[»] chr4 (5 HSPs)
chr4 (60-377)||(55203183-55203500)
chr4 (111-182)||(55205844-55205915)
chr4 (16-59)||(55203569-55203612)
chr4 (158-214)||(10032286-10032342)
chr4 (164-214)||(1856676-1856726)
[»] chr7 (4 HSPs)
chr7 (276-344)||(46466492-46466560)
chr7 (161-210)||(46164460-46164509)
chr7 (112-185)||(46513512-46513583)
chr7 (161-210)||(46169318-46169367)
[»] chr1 (4 HSPs)
chr1 (161-210)||(48990904-48990953)
chr1 (161-206)||(25491998-25492043)
chr1 (161-210)||(48986045-48986094)
chr1 (161-214)||(52433030-52433083)
[»] chr3 (2 HSPs)
chr3 (156-191)||(34374786-34374821)
chr3 (156-214)||(34374007-34374065)
[»] scaffold0060 (1 HSPs)
scaffold0060 (161-214)||(11167-11221)
[»] chr2 (1 HSPs)
chr2 (158-214)||(18259213-18259270)
[»] chr6 (1 HSPs)
chr6 (158-214)||(6356377-6356433)


Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 60 - 377
Target Start/End: Complemental strand, 55203500 - 55203183
Alignment:
Q  60 ggcggcgccggcaggaggcatggcgatgagtgagatacgcttgagaaagaggaagcgcgtgtttctcctctattttgttttttaattnnnnnnngctgat 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||    
T  55203500 ggcggcgccggcaggaggcatggcgatgagtgagatacgcttgagaaagaggaagcgcgtgtttctcctctattttgttttttaattaaaaaa-gctgat 55203402  T
Q  160 gttttgtttatttttaatctgaaccattgaatccctttcttccacatgtcattcaataaacgaat-cacacggtcgccttctccctgaaataatcctatt 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  55203401 gttttgtttatttttaatctgaaccattgaatccctttcttccacatgtcattcaataaacgaattcacacggtcgccttctccctgaaatgatcctatt 55203302  T
Q  259 ctgtgaaggtctccgtcgcaatcttcaatcccctaacgaattcatgcccagtgtaactctccgttttcttagccgcatcaatgaatacaagatcctcgaa 358  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55203301 ctgtgaaggtctccgtcgcaatattcaatcccctaacgaattcatgcgcggtgtaactctccgttttcttagccgcatcaatgaatacaagatcctcgaa 55203202  T
Q  359 caccatcaccctttcgttc 377  Q
    |||||||||||||||||||    
T  55203201 caccatcaccctttcgttc 55203183  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 55205844 - 55205915
Alignment:
Q  111 gaagcgcgtgtttctcctctattttgttttttaattnnnnnnngctgatgttttgtttatttttaatctgaa 182  Q
    ||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  55205844 gaagcgcgtgtttctcctctattttgttttttaattaaaaaaaactgatgttttgtttatttttaatctgaa 55205915  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 55203612 - 55203569
Alignment:
Q  16 agagaggagaaacaatggtggtttggtacgtgagagcggcagtg 59  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  55203612 agagaagagaaacaatggtggtttggtacgtgagagcggcagtg 55203569  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 10032286 - 10032342
Alignment:
Q  158 atgttttgtttatttttaatctgaaccattgaatccctttcttccacatgtcattca 214  Q
    ||||||||||||||||||||||||| |||||||||| ||| |  |||||||||||||    
T  10032286 atgttttgtttatttttaatctgaatcattgaatccttttttgtcacatgtcattca 10032342  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 1856676 - 1856726
Alignment:
Q  164 tgtttatttttaatctgaaccattgaatccctttcttccacatgtcattca 214  Q
    |||||||||| ||||||||||||||||||| ||| | ||||||||||||||    
T  1856676 tgtttattttaaatctgaaccattgaatccttttttgccacatgtcattca 1856726  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 276 - 344
Target Start/End: Original strand, 46466492 - 46466560
Alignment:
Q  276 gcaatcttcaatcccctaacgaattcatgcccagtgtaactctccgttttcttagccgcatcaatgaat 344  Q
    |||||||||||| ||||||||||||||| | |||||| ||||| ||||||||| |||| ||||||||||    
T  46466492 gcaatcttcaatgccctaacgaattcattcgcagtgttactcttcgttttctttgccgtatcaatgaat 46466560  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 46164509 - 46164460
Alignment:
Q  161 ttttgtttatttttaatctgaaccattgaatccctttcttccacatgtca 210  Q
    ||||||||||||||||||||||||||||||||| ||| | ||||||||||    
T  46164509 ttttgtttatttttaatctgaaccattgaatccatttttgccacatgtca 46164460  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 112 - 185
Target Start/End: Original strand, 46513512 - 46513583
Alignment:
Q  112 aagcgcgtgtttctcctctattttgttttttaattnnnnnnngctgatgttttgtttatttttaatctgaacca 185  Q
    ||||||||||| |||||||||||| ||||||||||       ||||||||||||||||||||||||||||||||    
T  46513512 aagcgcgtgtt-ctcctctatttttttttttaattaaaaaa-gctgatgttttgtttatttttaatctgaacca 46513583  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 46169318 - 46169367
Alignment:
Q  161 ttttgtttatttttaatctgaaccattgaatccctttcttccacatgtca 210  Q
    |||||||||||||||||||||| |||||||||| ||| | ||||||||||    
T  46169318 ttttgtttatttttaatctgaatcattgaatccatttttgccacatgtca 46169367  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 48990904 - 48990953
Alignment:
Q  161 ttttgtttatttttaatctgaaccattgaatccctttcttccacatgtca 210  Q
    ||||||||||||||||||||||||||||||||| ||| | ||||||||||    
T  48990904 ttttgtttatttttaatctgaaccattgaatccatttttgccacatgtca 48990953  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 25491998 - 25492043
Alignment:
Q  161 ttttgtttatttttaatctgaaccattgaatccctttcttccacat 206  Q
    ||||||||||||||||||||||||||||||||| ||| | ||||||    
T  25491998 ttttgtttatttttaatctgaaccattgaatccatttttgccacat 25492043  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 48986094 - 48986045
Alignment:
Q  161 ttttgtttatttttaatctgaaccattgaatccctttcttccacatgtca 210  Q
    |||||||||||||||||||||| |||||||||| ||| | ||||||||||    
T  48986094 ttttgtttatttttaatctgaatcattgaatccatttttgccacatgtca 48986045  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 52433083 - 52433030
Alignment:
Q  161 ttttgtttatttttaatctgaaccattgaatccctttcttccacatgtcattca 214  Q
    ||||||||||||||||||||||||||||||| | ||| | |||| |||||||||    
T  52433083 ttttgtttatttttaatctgaaccattgaattcatttgtgccacgtgtcattca 52433030  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 191
Target Start/End: Original strand, 34374786 - 34374821
Alignment:
Q  156 tgatgttttgtttatttttaatctgaaccattgaat 191  Q
    ||||||||||||||||||||||||||||||||||||    
T  34374786 tgatgttttgtttatttttaatctgaaccattgaat 34374821  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 34374065 - 34374007
Alignment:
Q  156 tgatgttttgtttatttttaatctgaaccattgaatccctttcttccacatgtcattca 214  Q
    ||||||||| |||||||||||||| ||||||||||||  ||| | ||||||||||||||    
T  34374065 tgatgttttatttatttttaatctaaaccattgaatcattttttgccacatgtcattca 34374007  T

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Target: scaffold0060 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 11221 - 11167
Alignment:
Q  161 ttttgtttatttttaatctgaaccattgaatccctttctt-ccacatgtcattca 214  Q
    ||||| ||||||||||||||||||||||||||| ||| || ||||||||||||||    
T  11221 ttttgattatttttaatctgaaccattgaatcctttttttaccacatgtcattca 11167  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 18259213 - 18259270
Alignment:
Q  158 atgttttgtttatttttaa-tctgaaccattgaatccctttcttccacatgtcattca 214  Q
    ||||||||||||||||||| | ||||||||||||||  ||| | ||||||||||||||    
T  18259213 atgttttgtttatttttaaatatgaaccattgaatctttttttgccacatgtcattca 18259270  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 6356377 - 6356433
Alignment:
Q  158 atgttttgtttatttttaatctgaaccattgaatccctttcttccacatgtcattca 214  Q
    |||||||| ||||||| ||||||||| ||||||||  ||| | ||||||||||||||    
T  6356377 atgttttgattattttaaatctgaacaattgaatcgatttttaccacatgtcattca 6356433  T

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