View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11436_low_32 (Length: 356)
Name: NF11436_low_32
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11436_low_32 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold1445 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 17 - 356
Target Start/End: Complemental strand, 26372612 - 26372270
Alignment:
| Q |
17 |
cagtcatgcatacaatattttaatatcatgaaaattgatgcaataaatcaaatatgaaacacc------tacacagacaccgatgccaatactaatttga |
110 |
Q |
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| T |
26372612 |
cagtcatgcatacaatattttaatatcatgaaaattgatgcaataaatcgaatatgaaacaccaacacatacacagacaccgatgccaatactaatttga |
26372513 |
T |
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| Q |
111 |
gaaaatgaaattatagaatgtaatcacattgttagtggcgtgtcaggccagacactgacacgtattgtcttcaatcagaagtgtcagtgatacaaataaa |
210 |
Q |
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| T |
26372512 |
gaaaatgaaattatagaatgtaatcacattgttagtggcgtgtcaggccagacactgacacgtattgtcttcaatcaaaagtgtcagtgatacaaataga |
26372413 |
T |
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| Q |
211 |
tnnnnnnnntgaattaaaattaccagcagattgacgttgaaaagaccttttcccttcccagaagccaagaacagctcattccaacacggcttgtaacctc |
310 |
Q |
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| T |
26372412 |
t---aaaaatgaattaaaattaccagcagattgatgttaaaaagaccctttcccttcccagaagccaagaacagctcattccaacaaggcttataacctc |
26372316 |
T |
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| Q |
311 |
tatgaaaattacgaatttcagaaggacgaaaaaaccaagcaactct |
356 |
Q |
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| T |
26372315 |
tatgaaaattacgaatttcagaaggacgaaaaaaccaaacaactct |
26372270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1445 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold1445
Description:
Target: scaffold1445; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 252 - 356
Target Start/End: Complemental strand, 1325 - 1221
Alignment:
| Q |
252 |
aagaccttttcccttcccagaagccaagaacagctcattccaacacggcttgtaacctctatgaaaattacgaatttcagaaggacgaaaaaaccaagca |
351 |
Q |
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| T |
1325 |
aagacctttgcctttcccagaagccaagaacaactcattccaactcggctgataacttcgatgaaaactctgaatttccgaaggacgaaagaaccaaaca |
1226 |
T |
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| Q |
352 |
actct |
356 |
Q |
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| T |
1225 |
actct |
1221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 147
Target Start/End: Original strand, 20119945 - 20120001
Alignment:
| Q |
92 |
gatgccaatactaatttgagaaaatgaaattatagaatgtaatcacat-tgttagtg |
147 |
Q |
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| T |
20119945 |
gatgccgataataatttgagaaaatgaaataatttaatgtaatcacatgtgttagtg |
20120001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 28524532 - 28524496
Alignment:
| Q |
103 |
taatttgagaaaatgaaattatagaatgtaatcacat |
139 |
Q |
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| T |
28524532 |
taatttgaaaaaatgaaatgatagaatgtaatcacat |
28524496 |
T |
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