View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11436_low_33 (Length: 353)
Name: NF11436_low_33
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11436_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 38536537 - 38536205
Alignment:
| Q |
1 |
tataactctatctgccaggatattaaaattcatccataatttgaagcaagtgttcagcaacttcttnnnnnnnnn-gtgttcaaacgacaacttgtttga |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
38536537 |
tataactctatctgccaggatattaaaattcatccataatttgaagcaagtgttcagcaacttcttaaaaaaaaaagtgttcaa-cgacaacttgtttga |
38536439 |
T |
|
| Q |
100 |
tttacatcaagatactatgacagtcaactgagaggatttacattgaagtattataatgatttcttgtgtcaaaagtcttaataacaagatgtttaagcga |
199 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| | | ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38536438 |
tttacatcaagatactatgac----------gaggatttacattgaagtattacactaatttcttgtgtcaaaagtcttaataacaaaatgtttaagcga |
38536349 |
T |
|
| Q |
200 |
cgtgttccgttgattgccacaacgacaagtgtatttggatgaagaaaagtggaggttgaccattatataagtgacaaaatccataaactaaatatcttat |
299 |
Q |
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||||||||||||||| ||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38536348 |
cgtgttccgttgattaccacagcaacaagtgtatgtggatgaagaaaagtggaggttgaccattatataagtgacaaaatccataaactaaatatcttat |
38536249 |
T |
|
| Q |
300 |
tgctcttgactcaatgtggttgatcctctttaactcctcctatg |
343 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38536248 |
tgctcttgattcaatgtggttgatcctctttaactcctcctatg |
38536205 |
T |
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