View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11436_low_34 (Length: 346)
Name: NF11436_low_34
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11436_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 46359312 - 46359642
Alignment:
| Q |
1 |
ccatccttcctgatgacggcgagatacttggtgacattttatattgcttttttaaaagaaatatgattaaagaagcctatgctctctttctggctgcaaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||| ||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46359312 |
ccatccttcctgatgacggcgagatacttggggacgtgttgtattgcttttttaaaagaaatatgattaaagaagcctatgctctctttctggctgcaaa |
46359411 |
T |
|
| Q |
101 |
tgagagacgcaaaacaaacccaaattggccgctgaagttaagaatgttgttaccacttaatatgatcaaaatgctatgtttnnnnnnngaaactgtacat |
200 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
46359412 |
tgagagacgctaaacaaacccaaattggccgctgaagttaagaatgttgttaccacttaatatgatcaaaatgctatgtttaaaaaaagaaactgtacat |
46359511 |
T |
|
| Q |
201 |
ttggctttcaagatgttgaatgatatccctgaggaagtggacgaccgggaaaaattgtttaaactcatgctctttacacatgttttcggagccttcaata |
300 |
Q |
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||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46359512 |
ttggctttcaagatgttgaatgatatccccgaggaggtggacgaccgggaaaaattgtttaaactcatgctctttacacatgttttcggagccttcaata |
46359611 |
T |
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| Q |
301 |
tacgatatcagtataattattactgcctatg |
331 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
46359612 |
tacgatatcagtataattattactgcctatg |
46359642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 44460442 - 44460736
Alignment:
| Q |
1 |
ccatccttcctgatgacggcgagatacttggtgacattttatattgcttttttaaaagaaatatgattaaagaagcctatgctctctttctggctgcaaa |
100 |
Q |
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||||||||||||||||||||||||||||||| ||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44460442 |
ccatccttcctgatgacggcgagatacttggggacgtgttgtattgcttttttaaaagaaatatgattaaagaagcctatgctctctttctggctgcaaa |
44460541 |
T |
|
| Q |
101 |
tgagagacgcaaaacaaacccaaattggccgctgaagttaagaatgttgttaccacttaatatgatcaaaatgctatgtttnnnnnnngaaactgtacat |
200 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
44460542 |
tgagagacgcaaaacaaacccaaactggccgctgaagttaagaatgttgttaccacttaatatgatccaaatgctatgtttaaaaaaagaaactgtacat |
44460641 |
T |
|
| Q |
201 |
ttggctttcaagatgttgaatgatatccctgaggaagtggacgaccgggaaaaattgtttaaactcatgctctttacacatgttttcggagcctt |
295 |
Q |
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||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44460642 |
ttggctttcaagatgttgaatgatatccccgaggaggtggacgaccgggaaaaattgtttaaactcatgctctttacacatgttttcggagcctt |
44460736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 44467975 - 44468269
Alignment:
| Q |
1 |
ccatccttcctgatgacggcgagatacttggtgacattttatattgcttttttaaaagaaatatgattaaagaagcctatgctctctttctggctgcaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44467975 |
ccatccttcctgatgacggcgagatacttggggacgtgttgtattgcttttttaaaagaaatatgattaaagaagcctatgctctctttctggctgcaaa |
44468074 |
T |
|
| Q |
101 |
tgagagacgcaaaacaaacccaaattggccgctgaagttaagaatgttgttaccacttaatatgatcaaaatgctatgtttnnnnnnngaaactgtacat |
200 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
44468075 |
tgagagacgcaaaacaaacccaaactggccgctgaagttaagaatgttgttaccacttaatatgatccaaatgctatgtttaaaaaaagaaactgtacat |
44468174 |
T |
|
| Q |
201 |
ttggctttcaagatgttgaatgatatccctgaggaagtggacgaccgggaaaaattgtttaaactcatgctctttacacatgttttcggagcctt |
295 |
Q |
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|
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44468175 |
ttggctttcaagatgttgaatgatatccccgaggaggtggacgaccgggaaaaattgtttaaactcatgctctttacacatgttttcggagcctt |
44468269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 59 - 234
Target Start/End: Complemental strand, 34502181 - 34502006
Alignment:
| Q |
59 |
aaatatgattaaagaagcctatgctctctttctggctgcaaatgagagacgcaaaacaaacccaaattggccgctgaagttaagaatgttgttaccactt |
158 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| ||| |||||||||||| |||||| |||||| | |
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| T |
34502181 |
aaatatgattaaagaagcctatgctctctatatggctgcaaatgagaaacgcaaaacaaacccaaactggtcgctgaagttaaaaatgttattaccattg |
34502082 |
T |
|
| Q |
159 |
aatatgatcaaaatgctatgtttnnnnnnngaaactgtacatttggctttcaagatgttgaatgatatccctgagg |
234 |
Q |
| |
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|||| ||||||||| || ||||| ||||| |||||| ||||||| |||||||||||||||||||||||| |
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| T |
34502081 |
aatacgatcaaaatactttgtttaagaaaggaaacggtacatctggctttggagatgttgaatgatatccctgagg |
34502006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 292 - 331
Target Start/End: Complemental strand, 34501880 - 34501841
Alignment:
| Q |
292 |
ccttcaatatacgatatcagtataattattactgcctatg |
331 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |
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| T |
34501880 |
ccttcaatatatgatatcagtataattattactgcctatg |
34501841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 292 - 331
Target Start/End: Original strand, 44460804 - 44460843
Alignment:
| Q |
292 |
ccttcaatatacgatatcagtataattattactgcctatg |
331 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||| |
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| T |
44460804 |
ccttcaatatatgatatcagtataattattactgcctatg |
44460843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 292 - 331
Target Start/End: Original strand, 44468337 - 44468376
Alignment:
| Q |
292 |
ccttcaatatacgatatcagtataattattactgcctatg |
331 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |
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| T |
44468337 |
ccttcaatatatgatatcagtataattattactgcctatg |
44468376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 40180464 - 40180344
Alignment:
| Q |
4 |
tccttcctgatgacggcgagatacttggtgacattttatattgcttttttaaaagaaatatgattaaagaagcctatgctctctttctggctgcaaatga |
103 |
Q |
| |
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||||||||||||| || ||||||||||| | | ||| ||| |||| ||||| |||||||||||||||||||||||||||| || ||| |||||||| |
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| T |
40180464 |
tccttcctgatgatggtaagatacttggtcgcttgttaacttggttttctaaaaataatatgattaaagaagcctatgctctctatcgggcagcaaatga |
40180365 |
T |
|
| Q |
104 |
gagacgcaaaacaaacccaaa |
124 |
Q |
| |
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|| ||| |||| ||||||||| |
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| T |
40180364 |
gaaacggaaaagaaacccaaa |
40180344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 38604910 - 38604846
Alignment:
| Q |
60 |
aatatgattaaagaagcctatgctctctttctggctgcaaatgagagacgcaaaacaaacccaaa |
124 |
Q |
| |
|
||||||||||||||||| |||||| ||| |||||||||||| |||| ||| |||||||| ||||| |
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|
| T |
38604910 |
aatatgattaaagaagcatatgctatctatctggctgcaaaggagaaacggaaaacaaatccaaa |
38604846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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