View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11436_low_35 (Length: 343)
Name: NF11436_low_35
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11436_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 16 - 339
Target Start/End: Complemental strand, 42767441 - 42767118
Alignment:
| Q |
16 |
aaatgttcgttcggcttacatgtttgtggttgaaatactcttgtaaatgcatcatactgcctattcaaatgggaaaaagaaaaatgaaattttagattat |
115 |
Q |
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| T |
42767441 |
aaatgttcgttcggcttacatgtttgtggttgaaatactcttgtaaatgcatcatactgcctattcaaatgggaaaaagaaaaatgaaattttagattat |
42767342 |
T |
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| Q |
116 |
atttgggttgattattcacgtttgactttagattatggtgtgtcactgtgctctgctcgatttcttcttaaacacatggaagagtattttttgttactat |
215 |
Q |
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| T |
42767341 |
atttgggttgattattcacgtttgagattagattatggtgtgtcactgtgctctgctcgatttcttcttaaacacatggaagagtattttttgttactat |
42767242 |
T |
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| Q |
216 |
caaagtggcgtaaacaatgaagtaaaatagtaaatgaataaaccaaaaaatgatagtattttttcctttcttcgtgacaaacgactaactagtctgtttg |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42767241 |
caaagtggcgtaaacaatgaagtaaaatagtaaatgaataaaccaaaaaatgagagtattttttactttcttcgtgacaaacgactaactagtctgtttg |
42767142 |
T |
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| Q |
316 |
atatggaccatttatgcaattgag |
339 |
Q |
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|||||||||||||||||| ||||| |
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| T |
42767141 |
atatggaccatttatgcatttgag |
42767118 |
T |
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