View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11436_low_37 (Length: 332)
Name: NF11436_low_37
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11436_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 47559517 - 47559204
Alignment:
| Q |
1 |
aaagaaagggaatgaacctgttgaaagcttttgacagttttaccgatactgcgaccaacttcaggcaatttcttaggaccaaaaacgatggcagcaacac |
100 |
Q |
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| T |
47559517 |
aaagaaagggaatgaacctgttgaaagcttttgacagttttaccgatactgcgaccaacttcaggcaatttcttaggaccaaaaacgatggcagcaacac |
47559418 |
T |
|
| Q |
101 |
cagcaataacaacgagttcaggtacacctaatccgaaaagtgcgttgcaagtgaaaccattattgtttannnnnnnnnnnnnnnnnngtggaggattaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
47559417 |
cagcaataacaacgagttcaggtacacctaatccgaaaagtgcgttgcaagtgaaaccattattgttta------ttcttcttcttcgtggaggattaat |
47559324 |
T |
|
| Q |
201 |
agaaacccttgaaatggaacaaagagatgaagaagaagagaaagcgaggtgttgttgtgttgctgcaattggggttgg------aattgaaattgaagaa |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
47559323 |
agaaacccttgaaatggaacaaagagatgaagaagaagagaaagcgaggtgttgttgtgttgctgcaattggggttggaattgaaattgaaattgaagaa |
47559224 |
T |
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| Q |
295 |
caaaacgaaacgcagttcat |
314 |
Q |
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|||||||||||||||||||| |
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| T |
47559223 |
caaaacgaaacgcagttcat |
47559204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 36004108 - 36004251
Alignment:
| Q |
14 |
gaacctgttgaaagcttttgacagttttaccgatactgcgaccaacttcaggcaatttcttaggaccaaaaacgatggcagcaacaccagcaataacaac |
113 |
Q |
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| T |
36004108 |
gaacctgttggaagcttttgacggttttgccgatgctgcgaccaacttcaggcaatttcttgggaccgaaaacaagagcagcaactccggcaataacaac |
36004207 |
T |
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| Q |
114 |
gagttcaggtacacctaatccgaaaagtgcgttgcaagtgaaac |
157 |
Q |
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| T |
36004208 |
aagctcgggcacgcctaatccaaagaaggcgttgcaagtaaaac |
36004251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 294
Target Start/End: Complemental strand, 21946129 - 21946082
Alignment:
| Q |
247 |
aggtgttgttgtgttgctgcaattggggttggaattgaaattgaagaa |
294 |
Q |
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|||||||||||| | |||||||||||||||||||||||||| ||||| |
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| T |
21946129 |
aggtgttgttgttgtactgcaattggggttggaattgaaattaaagaa |
21946082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 294
Target Start/End: Original strand, 52491315 - 52491348
Alignment:
| Q |
261 |
tgctgcaattggggttggaattgaaattgaagaa |
294 |
Q |
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| T |
52491315 |
tgctgcaattagggttggaattgaaattgaagaa |
52491348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 291
Target Start/End: Original strand, 30927289 - 30927317
Alignment:
| Q |
263 |
ctgcaattggggttggaattgaaattgaa |
291 |
Q |
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| T |
30927289 |
ctgcaattggggttggaattgaaattgaa |
30927317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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