View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11436_low_39 (Length: 330)

Name: NF11436_low_39
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11436_low_39
NF11436_low_39
[»] chr1 (19 HSPs)
chr1 (98-293)||(19915452-19915638)
chr1 (1-50)||(2581913-2581962)
chr1 (1-48)||(9474929-9474976)
chr1 (1-48)||(3000319-3000366)
chr1 (1-48)||(47452373-47452420)
chr1 (2-48)||(48716336-48716382)
chr1 (1-50)||(38595152-38595201)
chr1 (10-50)||(38632383-38632423)
chr1 (1-49)||(51898736-51898784)
chr1 (1-48)||(27564788-27564835)
chr1 (49-106)||(19914343-19914400)
chr1 (1-50)||(8346441-8346490)
chr1 (1-50)||(32813245-32813294)
chr1 (5-49)||(50630457-50630501)
chr1 (1-48)||(37649198-37649245)
chr1 (2-49)||(41758804-41758851)
chr1 (1-40)||(50591053-50591092)
chr1 (4-50)||(23597147-23597193)
chr1 (2-51)||(26274429-26274478)
[»] chr4 (20 HSPs)
chr4 (143-269)||(30360055-30360189)
chr4 (1-48)||(6034044-6034091)
chr4 (1-48)||(11511515-11511562)
chr4 (1-51)||(48183102-48183152)
chr4 (1-50)||(480500-480549)
chr4 (1-50)||(50052481-50052530)
chr4 (2-50)||(29239884-29239932)
chr4 (2-48)||(41236347-41236393)
chr4 (4-49)||(29234301-29234346)
chr4 (1-48)||(3481654-3481701)
chr4 (7-50)||(42044426-42044469)
chr4 (1-48)||(50526224-50526271)
chr4 (1-48)||(54473586-54473633)
chr4 (1-51)||(55475188-55475238)
chr4 (1-50)||(19670769-19670818)
chr4 (1-50)||(24995160-24995209)
chr4 (1-52)||(23608231-23608282)
chr4 (1-40)||(40574787-40574826)
chr4 (1-55)||(29548012-29548066)
chr4 (1-50)||(32766956-32767005)
[»] chr3 (23 HSPs)
chr3 (1-52)||(11095406-11095457)
chr3 (1-50)||(49607412-49607461)
chr3 (1-48)||(53982011-53982058)
chr3 (1-51)||(54868948-54868998)
chr3 (1-52)||(33118904-33118955)
chr3 (1-48)||(33644200-33644247)
chr3 (1-40)||(52629308-52629347)
chr3 (1-50)||(27714944-27714993)
chr3 (2-50)||(36707478-36707526)
chr3 (1-48)||(8076393-8076440)
chr3 (1-48)||(14623892-14623939)
chr3 (1-40)||(48587144-48587183)
chr3 (1-47)||(31456690-31456736)
chr3 (1-49)||(8956761-8956809)
chr3 (1-49)||(17470404-17470452)
chr3 (1-49)||(24700007-24700055)
chr3 (1-53)||(26141585-26141637)
chr3 (1-49)||(35536625-35536673)
chr3 (2-37)||(26754706-26754741)
chr3 (7-40)||(45058611-45058644)
chr3 (2-50)||(11347976-11348024)
chr3 (11-51)||(11907368-11907408)
chr3 (4-40)||(30801789-30801825)
[»] chr2 (23 HSPs)
chr2 (1-51)||(9058477-9058527)
chr2 (1-50)||(33436153-33436202)
chr2 (3-50)||(30915461-30915508)
chr2 (1-49)||(5574541-5574589)
chr2 (1-49)||(7465788-7465836)
chr2 (1-45)||(28863458-28863502)
chr2 (1-48)||(17473020-17473067)
chr2 (2-45)||(19930874-19930917)
chr2 (1-48)||(40701478-40701525)
chr2 (1-51)||(10249435-10249485)
chr2 (2-48)||(27864704-27864750)
chr2 (1-53)||(28381708-28381760)
chr2 (1-49)||(32505701-32505749)
chr2 (2-50)||(38882868-38882915)
chr2 (1-48)||(13438343-13438390)
chr2 (3-50)||(20700813-20700860)
chr2 (1-40)||(40613955-40613994)
chr2 (2-48)||(4060685-4060731)
chr2 (1-49)||(33436210-33436258)
chr2 (12-53)||(17823779-17823820)
chr2 (9-50)||(26891565-26891606)
chr2 (2-47)||(41575138-41575183)
chr2 (1-49)||(2533123-2533171)
[»] chr7 (22 HSPs)
chr7 (1-50)||(8080436-8080485)
chr7 (1-53)||(7389384-7389436)
chr7 (1-50)||(11044186-11044235)
chr7 (1-49)||(3434561-3434609)
chr7 (1-49)||(36361966-36362014)
chr7 (1-48)||(35137533-35137580)
chr7 (7-50)||(38837215-38837258)
chr7 (1-49)||(36362025-36362073)
chr7 (1-48)||(4999567-4999614)
chr7 (1-48)||(19329842-19329889)
chr7 (1-48)||(38267040-38267087)
chr7 (4-50)||(40957705-40957751)
chr7 (1-50)||(19436240-19436289)
chr7 (2-55)||(38044190-38044243)
chr7 (1-45)||(3783998-3784042)
chr7 (1-49)||(22343360-22343408)
chr7 (1-49)||(41915740-41915788)
chr7 (11-50)||(10343626-10343665)
chr7 (1-40)||(21234409-21234448)
chr7 (1-50)||(18207178-18207227)
chr7 (1-50)||(35468908-35468957)
chr7 (1-40)||(8238220-8238260)
[»] chr5 (19 HSPs)
chr5 (1-47)||(36875656-36875702)
chr5 (1-50)||(18520937-18520986)
chr5 (1-50)||(36732995-36733044)
chr5 (1-49)||(2740273-2740321)
chr5 (1-53)||(33149691-33149743)
chr5 (1-48)||(14831814-14831861)
chr5 (1-48)||(35785199-35785246)
chr5 (6-48)||(40145407-40145449)
chr5 (1-40)||(28177783-28177822)
chr5 (1-48)||(42414355-42414402)
chr5 (1-50)||(3921318-3921367)
chr5 (1-50)||(13811650-13811699)
chr5 (1-40)||(26720524-26720563)
chr5 (1-40)||(26990273-26990312)
chr5 (1-40)||(35943945-35943984)
chr5 (6-49)||(41470474-41470517)
chr5 (1-49)||(2252221-2252269)
chr5 (1-49)||(6679697-6679745)
chr5 (1-53)||(39688950-39689002)
[»] chr8 (22 HSPs)
chr8 (1-53)||(34012349-34012401)
chr8 (1-48)||(504174-504221)
chr8 (1-48)||(1179993-1180040)
chr8 (1-48)||(12831047-12831094)
chr8 (1-48)||(15197333-15197380)
chr8 (1-51)||(4854916-4854966)
chr8 (1-51)||(14547919-14547969)
chr8 (1-55)||(20074987-20075041)
chr8 (2-48)||(40423997-40424043)
chr8 (1-49)||(37038478-37038526)
chr8 (1-40)||(15048234-15048273)
chr8 (1-48)||(23122650-23122697)
chr8 (1-47)||(5957831-5957877)
chr8 (9-47)||(9122196-9122234)
chr8 (2-40)||(30479528-30479566)
chr8 (1-50)||(16383375-16383424)
chr8 (1-50)||(34307214-34307263)
chr8 (1-53)||(24307846-24307898)
chr8 (1-49)||(44507140-44507188)
chr8 (1-40)||(10621140-10621179)
chr8 (1-50)||(10284684-10284733)
chr8 (1-50)||(24307627-24307676)
[»] chr6 (12 HSPs)
chr6 (1-45)||(22880711-22880755)
chr6 (1-53)||(32869673-32869725)
chr6 (1-50)||(6209518-6209567)
chr6 (1-50)||(31110812-31110861)
chr6 (1-48)||(17598554-17598601)
chr6 (1-51)||(15990095-15990145)
chr6 (2-36)||(31109454-31109488)
chr6 (1-50)||(30341413-30341462)
chr6 (1-49)||(11427615-11427665)
chr6 (1-40)||(15508077-15508116)
chr6 (1-48)||(31953083-31953130)
chr6 (1-49)||(31976247-31976295)
[»] scaffold0321 (1 HSPs)
scaffold0321 (2-50)||(10163-10211)
[»] scaffold1268 (1 HSPs)
scaffold1268 (6-48)||(987-1029)
[»] scaffold1267 (1 HSPs)
scaffold1267 (6-48)||(987-1029)


Alignment Details
Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 98 - 293
Target Start/End: Original strand, 19915452 - 19915638
Alignment:
Q  98 aaaaaacattgattcaggaattttttggagtcaaggatacagaacgcattagctgcaatttagaaaaatttacaataaagaatacagaactattacacta 197  Q
    ||||||||||||||||| |||||||| ||||||| |||||||||         |||||||||||||||||||||| ||||||||||||||||||||||||    
T  19915452 aaaaaacattgattcagaaattttttagagtcaaagatacagaa---------tgcaatttagaaaaatttacaacaaagaatacagaactattacacta 19915542  T
Q  198 ttacagagacacctagtgaggtgtcaaggattcaagaattcttgaacaccaaactttgatcagatctgatactccaatcatctcatgttaggagca 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19915543 ttacagagacacctagtgaggtgtcaaggattcaagaattcttgaacaccaaactttgatcagatctgatactccaatcatctcatgttagtagca 19915638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 2581962 - 2581913
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2581962 gtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctt 2581913  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 9474929 - 9474976
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactc 48  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||    
T  9474929 gtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 9474976  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 3000366 - 3000319
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactc 48  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||    
T  3000366 gtgtcaaagggtgtattgccacctaagggtgtttatgtatcattactc 3000319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 47452373 - 47452420
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactc 48  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||    
T  47452373 gtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 47452420  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 48716336 - 48716382
Alignment:
Q  2 tgtcaaagggtgtattgccacctaagggtgtctatgtatgattactc 48  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||    
T  48716336 tgtcaaatggtgtattgccacctaagggtgtctatgtatcattactc 48716382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 38595201 - 38595152
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    |||||||||||||||||||||||||| ||||| ||||||| |||||||||    
T  38595201 gtgtcaaagggtgtattgccacctaaaggtgtttatgtatcattactctt 38595152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 38632383 - 38632423
Alignment:
Q  10 ggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  38632383 ggtgtattgccacctaagggtgtctatgtatcattactctt 38632423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 51898736 - 51898784
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactct 49  Q
    |||||||||||||||||||||||||| | ||||||||||| ||||||||    
T  51898736 gtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactct 51898784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 27564788 - 27564835
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactc 48  Q
    |||||||| ||||||||||||||||||| ||||||||||| |||||||    
T  27564788 gtgtcaaaaggtgtattgccacctaaggatgtctatgtatcattactc 27564835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 19914343 - 19914400
Alignment:
Q  49 ttaaattctagatggg-ctacaaggaatcgattgttaaagacctccctctaaaaaacat 106  Q
    |||||||||||||||| ||| |||||||| ||||||||| |||||||||||||||||||    
T  19914343 ttaaattctagatggggctagaaggaatcaattgttaaa-acctccctctaaaaaacat 19914400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 8346441 - 8346490
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    |||||||| ||||||||||||||||| |||| |||||||| |||||||||    
T  8346441 gtgtcaaatggtgtattgccacctaaaggtgactatgtatcattactctt 8346490  T

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Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 32813294 - 32813245
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    |||| ||||||||||||||||||||||| ||||||||||| || ||||||    
T  32813294 gtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 32813245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 50630501 - 50630457
Alignment:
Q  5 caaagggtgtattgccacctaagggtgtctatgtatgattactct 49  Q
    |||||| ||||||||||||||||||| ||||||||| ||||||||    
T  50630501 caaaggatgtattgccacctaagggtatctatgtatcattactct 50630457  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 37649245 - 37649198
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactc 48  Q
    ||||||||| |||||||||||||||| | ||||||||||| |||||||    
T  37649245 gtgtcaaagagtgtattgccacctaaagatgtctatgtatcattactc 37649198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 41758851 - 41758804
Alignment:
Q  2 tgtcaaagggtgtattgccacctaagggtgtctatgtatgattactct 49  Q
    ||||||||||||||||||||  ||| ||||||||||||| ||||||||    
T  41758851 tgtcaaagggtgtattgccatttaatggtgtctatgtatcattactct 41758804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 50591053 - 50591092
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtat 40  Q
    ||||||| |||||||||||||||||||||||| |||||||    
T  50591053 gtgtcaaggggtgtattgccacctaagggtgtttatgtat 50591092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 23597147 - 23597193
Alignment:
Q  4 tcaaagggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    |||||| |||||||||||||||| | ||||||||||| |||||||||    
T  23597147 tcaaagagtgtattgccacctaatgatgtctatgtatcattactctt 23597193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 26274478 - 26274429
Alignment:
Q  2 tgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctta 51  Q
    ||||||| | ||||||||||| ||||||||||||||||| |||| |||||    
T  26274478 tgtcaaatgatgtattgccacataagggtgtctatgtatcattattctta 26274429  T

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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 143 - 269
Target Start/End: Original strand, 30360055 - 30360189
Alignment:
Q  143 gcattagctgcaatttagaaaaatttacaataaagaatacaga----actattacactattacagagacacctagtg--aggtgtcaaggattcaagaat 236  Q
    |||||| ||||||||| ||||||||||||  ||||||||||||    |||||||||||||||||| ||||||||| |  ||||||||||||||||||| |    
T  30360055 gcattacctgcaattttgaaaaatttacatcaaagaatacagatttaactattacactattacagtgacacctagagggaggtgtcaaggattcaagagt 30360154  T
Q  237 tcttgaacacc--aaactttgatcagatctgatac 269  Q
    |||||||||||  ||||||||||||||||||||||    
T  30360155 tcttgaacaccaaaaactttgatcagatctgatac 30360189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 6034091 - 6034044
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactc 48  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||    
T  6034091 gtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 6034044  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 11511515 - 11511562
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactc 48  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||    
T  11511515 gtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 11511562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 48183102 - 48183152
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctta 51  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  48183102 gtgtcaaagggtgtattgccacgtaagggtgtctatgtatcattactctta 48183152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 480500 - 480549
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  480500 gtgtcaaagggtgtattgtcacctaagggtgtctatgtatcattactctt 480549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 50052481 - 50052530
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  50052481 gtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactctt 50052530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 29239932 - 29239884
Alignment:
Q  2 tgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  29239932 tgtcaaatggtgtattgccacctaagggtgtctatgtatcattactctt 29239884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 41236393 - 41236347
Alignment:
Q  2 tgtcaaagggtgtattgccacctaagggtgtctatgtatgattactc 48  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||    
T  41236393 tgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 41236347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 29234301 - 29234346
Alignment:
Q  4 tcaaagggtgtattgccacctaagggtgtctatgtatgattactct 49  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||    
T  29234301 tcaaagggtgtattgccatctaagggtgtctatgtatcattactct 29234346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 3481701 - 3481654
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactc 48  Q
    ||||||||| |||||||||||||||| ||||||||||||| |||||||    
T  3481701 gtgtcaaagagtgtattgccacctaaaggtgtctatgtatcattactc 3481654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 42044426 - 42044469
Alignment:
Q  7 aagggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    |||| ||||||||||||||||||||||||||||| |||||||||    
T  42044426 aaggatgtattgccacctaagggtgtctatgtatcattactctt 42044469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 50526224 - 50526271
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactc 48  Q
    |||||||||||||||||||||||||| | ||||||||||| |||||||    
T  50526224 gtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactc 50526271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 54473586 - 54473633
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactc 48  Q
    |||||||| ||||||||| ||||||||||||||||||||| |||||||    
T  54473586 gtgtcaaatggtgtattgtcacctaagggtgtctatgtatcattactc 54473633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 55475238 - 55475188
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctta 51  Q
    |||||||||||||||||||||||||||| ||| ||||||| || |||||||    
T  55475238 gtgtcaaagggtgtattgccacctaaggatgtttatgtatcataactctta 55475188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 19670769 - 19670818
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    ||||||| |||||||||||||||||||||||| ||||||| || ||||||    
T  19670769 gtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 19670818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 24995160 - 24995209
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    ||||||||||||||||||||| ||||||||||| || ||| |||||||||    
T  24995160 gtgtcaaagggtgtattgccatctaagggtgtccatatatcattactctt 24995209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 23608282 - 23608231
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactcttaa 52  Q
    |||||||| ||||||||| || |||||||||||||| ||| |||||||||||    
T  23608282 gtgtcaaatggtgtattgtcatctaagggtgtctatatatcattactcttaa 23608231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 40574826 - 40574787
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtat 40  Q
    ||||||||||||||||| |||||||||| |||||||||||    
T  40574826 gtgtcaaagggtgtattaccacctaaggatgtctatgtat 40574787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 29548012 - 29548066
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactcttaaatt 55  Q
    ||||||| || ||||||||||||||||| ||| ||||||| || |||||||||||    
T  29548012 gtgtcaagggatgtattgccacctaaggatgtttatgtatcataactcttaaatt 29548066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 32767005 - 32766956
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    ||||||| ||||||||||||||||||| |||| ||||||| || ||||||    
T  32767005 gtgtcaaggggtgtattgccacctaagagtgtttatgtatcataactctt 32766956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 11095406 - 11095457
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactcttaa 52  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11095406 gtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactcttaa 11095457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 49607461 - 49607412
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  49607461 gtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctt 49607412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 53982058 - 53982011
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactc 48  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||    
T  53982058 gtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 53982011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 54868948 - 54868998
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctta 51  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  54868948 gtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactctta 54868998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 33118904 - 33118955
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactcttaa 52  Q
    |||||||||||||||||| ||||||||||||||||||||| || ||||||||    
T  33118904 gtgtcaaagggtgtattgtcacctaagggtgtctatgtatcataactcttaa 33118955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 33644247 - 33644200
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactc 48  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||    
T  33644247 gtgtcaaagggtgtattgccacccaagggtgtctatgtatcattactc 33644200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 52629347 - 52629308
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtat 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  52629347 gtgtcaaagggtgtattgccacctaagggtgtctatgtat 52629308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 27714944 - 27714993
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    ||||||||||||||||| |||||||| ||||||||||||| |||||||||    
T  27714944 gtgtcaaagggtgtattaccacctaaaggtgtctatgtatcattactctt 27714993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 36707478 - 36707526
Alignment:
Q  2 tgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    ||||||||||||||||| ||||||||||| ||||||||| |||||||||    
T  36707478 tgtcaaagggtgtattgtcacctaagggtatctatgtatcattactctt 36707526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 8076440 - 8076393
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactc 48  Q
    ||||||||||||||| |||||||||||||||| ||||||| |||||||    
T  8076440 gtgtcaaagggtgtactgccacctaagggtgtttatgtatcattactc 8076393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 14623892 - 14623939
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactc 48  Q
    ||||||| |||||||||||||||||||| ||||||||||| |||||||    
T  14623892 gtgtcaaggggtgtattgccacctaaggatgtctatgtatcattactc 14623939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 48587144 - 48587183
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtat 40  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  48587144 gtgtcaaagggtgtattgccacctaagggtatctatgtat 48587183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 31456736 - 31456690
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattact 47  Q
    |||||||||||||||||||| |||| |||||||||||||| ||||||    
T  31456736 gtgtcaaagggtgtattgccgcctatgggtgtctatgtatcattact 31456690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 8956809 - 8956761
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactct 49  Q
    |||||||||| ||||||||||| ||||| ||||||||||| ||||||||    
T  8956809 gtgtcaaaggatgtattgccacataaggatgtctatgtatcattactct 8956761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 17470452 - 17470404
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactct 49  Q
    |||| ||| ||||||||||||||||| ||||||||||||| ||||||||    
T  17470452 gtgttaaaaggtgtattgccacctaaaggtgtctatgtatcattactct 17470404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 24700007 - 24700055
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactct 49  Q
    |||||||| |||||||||||| |||||| ||||||||||| ||||||||    
T  24700007 gtgtcaaaaggtgtattgccaactaaggatgtctatgtatcattactct 24700055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 26141585 - 26141637
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactcttaaa 53  Q
    |||| ||||||||||||||||||||||| ||||||||||| || |||| ||||    
T  26141585 gtgttaaagggtgtattgccacctaaggatgtctatgtatcataactcataaa 26141637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 35536673 - 35536625
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactct 49  Q
    |||||||| ||||||||||||| ||||| ||||||||||| ||||||||    
T  35536673 gtgtcaaatggtgtattgccacataaggatgtctatgtatcattactct 35536625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 26754741 - 26754706
Alignment:
Q  2 tgtcaaagggtgtattgccacctaagggtgtctatg 37  Q
    |||| |||||||||||||||||||||||||||||||    
T  26754741 tgtccaagggtgtattgccacctaagggtgtctatg 26754706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 45058611 - 45058644
Alignment:
Q  7 aagggtgtattgccacctaagggtgtctatgtat 40  Q
    |||||||||||||||||||||||||| |||||||    
T  45058611 aagggtgtattgccacctaagggtgtttatgtat 45058644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 11347976 - 11348024
Alignment:
Q  2 tgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    ||||||||| ||||||| ||||||||| ||||||||||| || ||||||    
T  11347976 tgtcaaaggatgtattgtcacctaaggatgtctatgtatcataactctt 11348024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 11907408 - 11907368
Alignment:
Q  11 gtgtattgccacctaagggtgtctatgtatgattactctta 51  Q
    |||||||| ||||||||||||||||||||| || |||||||    
T  11907408 gtgtattgtcacctaagggtgtctatgtatcataactctta 11907368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 30801789 - 30801825
Alignment:
Q  4 tcaaagggtgtattgccacctaagggtgtctatgtat 40  Q
    ||||||||||||||  |||||||||||||||||||||    
T  30801789 tcaaagggtgtattatcacctaagggtgtctatgtat 30801825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 9058527 - 9058477
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctta 51  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9058527 gtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctta 9058477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 33436153 - 33436202
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33436153 gtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctt 33436202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 30915508 - 30915461
Alignment:
Q  3 gtcaaagggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  30915508 gtcaaagggtgtattgccacctaagggtgtctatgtatcattactctt 30915461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 5574541 - 5574589
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactct 49  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  5574541 gtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactct 5574589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 7465788 - 7465836
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactct 49  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  7465788 gtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactct 7465836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 28863502 - 28863458
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgatta 45  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  28863502 gtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 28863458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 17473067 - 17473020
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactc 48  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||    
T  17473067 gtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 17473020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 19930874 - 19930917
Alignment:
Q  2 tgtcaaagggtgtattgccacctaagggtgtctatgtatgatta 45  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  19930874 tgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 19930917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 40701525 - 40701478
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactc 48  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||    
T  40701525 gtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 40701478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 10249435 - 10249485
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctta 51  Q
    |||||||| ||||||||| ||||||||||||||||||||| ||||||||||    
T  10249435 gtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactctta 10249485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 27864750 - 27864704
Alignment:
Q  2 tgtcaaagggtgtattgccacctaagggtgtctatgtatgattactc 48  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||    
T  27864750 tgtcaaagggtgtattgccacataagggtgtctatgtatcattactc 27864704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 28381708 - 28381760
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactcttaaa 53  Q
    ||||| || ||||||||||||||||||||||||||||||| ||||||| ||||    
T  28381708 gtgtcgaaaggtgtattgccacctaagggtgtctatgtatcattactcataaa 28381760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 32505701 - 32505749
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactct 49  Q
    |||||||| ||||||||| ||||||||||||||||||||| ||||||||    
T  32505701 gtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactct 32505749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 38882868 - 38882915
Alignment:
Q  2 tgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  38882868 tgtcaaagggt-tattgccacctaagggtgtctatgtatcattactctt 38882915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 13438390 - 13438343
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactc 48  Q
    |||||||||| ||||||| ||||||||||||||||||||| |||||||    
T  13438390 gtgtcaaaggatgtattgtcacctaagggtgtctatgtatcattactc 13438343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 20700860 - 20700813
Alignment:
Q  3 gtcaaagggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    |||||||||||||||||||| ||||| ||||||||||| |||||||||    
T  20700860 gtcaaagggtgtattgccacataaggatgtctatgtatcattactctt 20700813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 40613955 - 40613994
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtat 40  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  40613955 gtgtcaaagggtgtattgccacctaaggatgtctatgtat 40613994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 4060731 - 4060685
Alignment:
Q  2 tgtcaaagggtgtattgccacctaagggtgtctatgtatgattactc 48  Q
    ||||||| ||||||||| ||||||||||||||||||||| |||||||    
T  4060731 tgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactc 4060685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 33436258 - 33436210
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactct 49  Q
    |||||||| |||||||||||| |||||| ||||||||||| ||||||||    
T  33436258 gtgtcaaaaggtgtattgccatctaaggatgtctatgtatcattactct 33436210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 17823820 - 17823779
Alignment:
Q  12 tgtattgccacctaagggtgtctatgtatgattactcttaaa 53  Q
    ||||||||||||||||| ||| ||||||| ||||||||||||    
T  17823820 tgtattgccacctaaggatgtatatgtatcattactcttaaa 17823779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 26891565 - 26891606
Alignment:
Q  9 gggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    ||||||||||||||||||||||| |||||||| || ||||||    
T  26891565 gggtgtattgccacctaagggtggctatgtatcataactctt 26891606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 41575183 - 41575138
Alignment:
Q  2 tgtcaaagggtgtattgccacctaagggtgtctatgtatgattact 47  Q
    |||||||||||||||| ||| |||||| ||||||||||| ||||||    
T  41575183 tgtcaaagggtgtattaccatctaaggatgtctatgtatcattact 41575138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 2533171 - 2533123
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactct 49  Q
    |||||||||| ||||||||||| ||||| ||||||||||| || |||||    
T  2533171 gtgtcaaaggatgtattgccacttaaggatgtctatgtatcataactct 2533123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 8080436 - 8080485
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8080436 gtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctt 8080485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 7389436 - 7389384
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactcttaaa 53  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  7389436 gtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactcttaaa 7389384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 11044235 - 11044186
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  11044235 gtgtcaaaggatgtattgccacctaagggtgtctatgtatcattactctt 11044186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 3434609 - 3434561
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactct 49  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  3434609 gtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactct 3434561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 36361966 - 36362014
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactct 49  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  36361966 gtgtcaaaggatgtattgccacctaagggtgtctatgtatcattactct 36362014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 35137580 - 35137533
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactc 48  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||    
T  35137580 gtgtcaaagggtgtattgccacctaagggtgtctatttatcattactc 35137533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 38837258 - 38837215
Alignment:
Q  7 aagggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  38837258 aagggtgtattgccacctaagggtgtctatgtatcattactctt 38837215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 36362073 - 36362025
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactct 49  Q
    |||||||||| |||||| |||||||||||||||||||||| ||||||||    
T  36362073 gtgtcaaaggatgtattaccacctaagggtgtctatgtatcattactct 36362025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 4999567 - 4999614
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactc 48  Q
    |||||||| |||||||||||| |||||||||||||||||| |||||||    
T  4999567 gtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 4999614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 19329889 - 19329842
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactc 48  Q
    |||||||| ||||||||||||||||||| ||||||||||| |||||||    
T  19329889 gtgtcaaaaggtgtattgccacctaaggatgtctatgtatcattactc 19329842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 38267087 - 38267040
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactc 48  Q
    |||||||||||||||||| ||| ||||||||||||||||| |||||||    
T  38267087 gtgtcaaagggtgtattgtcacataagggtgtctatgtatcattactc 38267040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 40957751 - 40957705
Alignment:
Q  4 tcaaagggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    |||||| ||||||||||||||||| |||||||||||| |||||||||    
T  40957751 tcaaagagtgtattgccacctaagagtgtctatgtatcattactctt 40957705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 19436240 - 19436289
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    |||||||| ||||||||| ||||||||| ||||||||||| |||||||||    
T  19436240 gtgtcaaaaggtgtattgtcacctaaggatgtctatgtatcattactctt 19436289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 38044243 - 38044190
Alignment:
Q  2 tgtcaaagggtgtattgccacctaagggtgtctatgtatgattactcttaaatt 55  Q
    |||||| |||||||||||||||||||||||| ||||||| || |||||| ||||    
T  38044243 tgtcaaggggtgtattgccacctaagggtgtttatgtatcataactcttcaatt 38044190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 3784042 - 3783998
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgatta 45  Q
    |||||||| | ||||||||||||||||||||||||||||| ||||    
T  3784042 gtgtcaaaagatgtattgccacctaagggtgtctatgtatcatta 3783998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 22343408 - 22343360
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactct 49  Q
    ||||||| |||||||||||||||||||||||| ||||||| || |||||    
T  22343408 gtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactct 22343360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 41915788 - 41915740
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactct 49  Q
    ||||||| |||||||||||||||||||||||| ||||||| || |||||    
T  41915788 gtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactct 41915740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 10343626 - 10343665
Alignment:
Q  11 gtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    ||||||| |||||||||||||||||||||| |||||||||    
T  10343626 gtgtatttccacctaagggtgtctatgtatcattactctt 10343665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 21234448 - 21234409
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtat 40  Q
    |||||||||||||||||| ||||||||| |||||||||||    
T  21234448 gtgtcaaagggtgtattgtcacctaaggatgtctatgtat 21234409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 18207227 - 18207178
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    |||||||  ||||||||||||||||||| ||||||||||| || ||||||    
T  18207227 gtgtcaagaggtgtattgccacctaaggttgtctatgtatcataactctt 18207178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 35468908 - 35468957
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    |||||||| | |||||||||| |||||| ||||||||||| |||||||||    
T  35468908 gtgtcaaatgatgtattgccatctaaggatgtctatgtatcattactctt 35468957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 8238260 - 8238220
Alignment:
Q  1 gtgtcaaagggtgtattgccaccta-agggtgtctatgtat 40  Q
    ||||||||||||||||||||||||| ||||||| |||||||    
T  8238260 gtgtcaaagggtgtattgccacctacagggtgtttatgtat 8238220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 36875656 - 36875702
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattact 47  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||    
T  36875656 gtgtcaaagggtgtattgccacctaagggtgtctatgtatcattact 36875702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 18520937 - 18520986
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  18520937 gtgtcaaagggtgtattgccacctaagggtgtctatgtatcattattctt 18520986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 36732995 - 36733044
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  36732995 gtgtcaaagggtgtattgctacctaagggtgtctatgtatcattactctt 36733044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 2740321 - 2740273
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactct 49  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  2740321 gtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactct 2740273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 33149691 - 33149743
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactcttaaa 53  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||| ||||    
T  33149691 gtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactcataaa 33149743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 14831861 - 14831814
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactc 48  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||    
T  14831861 gtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactc 14831814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 35785246 - 35785199
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactc 48  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||    
T  35785246 gtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 35785199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 48
Target Start/End: Complemental strand, 40145449 - 40145407
Alignment:
Q  6 aaagggtgtattgccacctaagggtgtctatgtatgattactc 48  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  40145449 aaagggtgtattgccacctaagggtgtctatgtatcattactc 40145407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 28177822 - 28177783
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtat 40  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  28177822 gtgtcaaagggtgtattgccacctaaggatgtctatgtat 28177783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 42414355 - 42414402
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactc 48  Q
    |||||||||||||||||||||||||  ||||||||||||| |||||||    
T  42414355 gtgtcaaagggtgtattgccacctactggtgtctatgtatcattactc 42414402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 3921318 - 3921367
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    ||||||| |||||||||||||||||||||||| ||||||| || ||||||    
T  3921318 gtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 3921367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 13811699 - 13811650
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    |||||||| | |||||||||||||||||||||||||||||  ||||||||    
T  13811699 gtgtcaaatgatgtattgccacctaagggtgtctatgtatctttactctt 13811650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 26720563 - 26720524
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtat 40  Q
    |||| ||||||||||||||||||||||| |||||||||||    
T  26720563 gtgttaaagggtgtattgccacctaaggatgtctatgtat 26720524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 26990312 - 26990273
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtat 40  Q
    |||| ||||||||||||||||||||||| |||||||||||    
T  26990312 gtgttaaagggtgtattgccacctaaggatgtctatgtat 26990273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 35943945 - 35943984
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtat 40  Q
    |||||||| | |||||||||||||||||||||||||||||    
T  35943945 gtgtcaaatgatgtattgccacctaagggtgtctatgtat 35943984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 41470474 - 41470517
Alignment:
Q  6 aaagggtgtattgccacctaagggtgtctatgtatgattactct 49  Q
    ||||| ||||||||||||||| ||||||||||||| ||||||||    
T  41470474 aaaggatgtattgccacctaaaggtgtctatgtattattactct 41470517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 2252221 - 2252269
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactct 49  Q
    ||||||| |||||||||||||||||||| ||| ||||||| || |||||    
T  2252221 gtgtcaaggggtgtattgccacctaaggatgtttatgtatcataactct 2252269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 6679745 - 6679697
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactct 49  Q
    |||||||| ||||||||||||||||| | ||||||||||| || |||||    
T  6679745 gtgtcaaaaggtgtattgccacctaaagatgtctatgtatcataactct 6679697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 39688950 - 39689002
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactcttaaa 53  Q
    ||||||| || ||||||||||| ||||||||| ||||||| || |||||||||    
T  39688950 gtgtcaagggatgtattgccacttaagggtgtttatgtatcataactcttaaa 39689002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 34012349 - 34012401
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactcttaaa 53  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||| ||||    
T  34012349 gtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactcataaa 34012401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 504174 - 504221
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactc 48  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||    
T  504174 gtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 504221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 1179993 - 1180040
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactc 48  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||    
T  1179993 gtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 1180040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 12831094 - 12831047
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactc 48  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||    
T  12831094 gtgtcaaagggtgtattgtcacctaagggtgtctatgtatcattactc 12831047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 15197380 - 15197333
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactc 48  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||    
T  15197380 gtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactc 15197333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 4854916 - 4854966
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctta 51  Q
    |||| ||||||||||||||||||||||| ||||||||||| ||||||||||    
T  4854916 gtgttaaagggtgtattgccacctaaggatgtctatgtatcattactctta 4854966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 14547969 - 14547919
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctta 51  Q
    |||||||| |||||||||||||||||||||||||||||||  |||||||||    
T  14547969 gtgtcaaatggtgtattgccacctaagggtgtctatgtatctttactctta 14547919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 20074987 - 20075041
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactcttaaatt 55  Q
    ||||||||| |||||||||||||||||| ||||||||||| ||||||| ||||||    
T  20074987 gtgtcaaagagtgtattgccacctaaggatgtctatgtatcattactcataaatt 20075041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 40423997 - 40424043
Alignment:
Q  2 tgtcaaagggtgtattgccacctaagggtgtctatgtatgattactc 48  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||    
T  40423997 tgtcaaagggtgtattgccacctaagggtatctatgtatcattactc 40424043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 37038526 - 37038478
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactct 49  Q
    |||||||||||||||||||||||||| | ||||||||||| ||||||||    
T  37038526 gtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactct 37038478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 15048234 - 15048273
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtat 40  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  15048234 gtgtcaaagggtgtattgccacctaaggatgtctatgtat 15048273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 23122650 - 23122697
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactc 48  Q
    |||||||| ||||||||||||| ||||||||||||||||| |||||||    
T  23122650 gtgtcaaaaggtgtattgccacttaagggtgtctatgtatcattactc 23122697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 5957877 - 5957831
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattact 47  Q
    |||||||||||||||||||||||||||  ||||||||||| ||||||    
T  5957877 gtgtcaaagggtgtattgccacctaagaatgtctatgtatcattact 5957831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 9122234 - 9122196
Alignment:
Q  9 gggtgtattgccacctaagggtgtctatgtatgattact 47  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  9122234 gggtgtattgccacctaagggtgtctatgtatcattact 9122196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 30479528 - 30479566
Alignment:
Q  2 tgtcaaagggtgtattgccacctaagggtgtctatgtat 40  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  30479528 tgtcaaagggtgtattgccacctaagggtgtttatgtat 30479566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 16383424 - 16383375
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    ||||||| |||||||||||||||||||||||| ||||||| || ||||||    
T  16383424 gtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 16383375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 34307263 - 34307214
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    ||||||| |||||||||||||||||||||||| ||||||| || ||||||    
T  34307263 gtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 34307214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 24307846 - 24307898
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactcttaaa 53  Q
    ||||||| || ||||||||||||||||||||| ||||||| || |||||||||    
T  24307846 gtgtcaagggatgtattgccacctaagggtgtttatgtatcataactcttaaa 24307898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 44507140 - 44507188
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactct 49  Q
    |||| |||| ||||||| |||||||||||||||||||||| ||||||||    
T  44507140 gtgttaaagagtgtattaccacctaagggtgtctatgtatcattactct 44507188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 10621140 - 10621179
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtat 40  Q
    ||||||||||||||||| |||||||||| |||||||||||    
T  10621140 gtgtcaaagggtgtattaccacctaaggatgtctatgtat 10621179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 10284684 - 10284733
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    ||||||||| |||||||| ||| ||||||||||||||||| || ||||||    
T  10284684 gtgtcaaagagtgtattgtcacttaagggtgtctatgtatcataactctt 10284733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 24307676 - 24307627
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    ||||||| || ||||||||||||||||||||| ||||||| || ||||||    
T  24307676 gtgtcaatggatgtattgccacctaagggtgtttatgtatcataactctt 24307627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 22880711 - 22880755
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgatta 45  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  22880711 gtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 22880755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 32869725 - 32869673
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactcttaaa 53  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||| ||||    
T  32869725 gtgtcaaagggtgtattgccacctaagggtgtctatgtatctttactcataaa 32869673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 6209518 - 6209567
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    ||||||||  |||||||||||||||||||||||||||||| |||||||||    
T  6209518 gtgtcaaatagtgtattgccacctaagggtgtctatgtatcattactctt 6209567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 31110812 - 31110861
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    |||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  31110812 gtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactctt 31110861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 17598601 - 17598554
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactc 48  Q
    |||||||| | ||||||||||||||||||||||||||||| |||||||    
T  17598601 gtgtcaaaagatgtattgccacctaagggtgtctatgtatcattactc 17598554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 15990095 - 15990145
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctta 51  Q
    ||||||| |||||||||||||||||||||||| ||||||| || |||||||    
T  15990095 gtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctta 15990145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 31109454 - 31109488
Alignment:
Q  2 tgtcaaagggtgtattgccacctaagggtgtctat 36  Q
    |||||||||||||||||||||||||||||||||||    
T  31109454 tgtcaaagggtgtattgccacctaagggtgtctat 31109488  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 30341413 - 30341462
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    ||||||| |||||||||||||||||||||||| ||||||| || ||||||    
T  30341413 gtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 30341462  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 11427665 - 11427615
Alignment:
Q  1 gtgtcaaagggtgtattgccaccta--agggtgtctatgtatgattactct 49  Q
    |||||||||| ||||||||||||||  ||||||||||||||| ||||||||    
T  11427665 gtgtcaaaggatgtattgccacctaagagggtgtctatgtatcattactct 11427615  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 15508077 - 15508116
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtat 40  Q
    ||||||| |||||||||||||||||||||||| |||||||    
T  15508077 gtgtcaaggggtgtattgccacctaagggtgtttatgtat 15508116  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 31953083 - 31953130
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactc 48  Q
    ||||||| |||||||||||||||||||| ||||||| ||| |||||||    
T  31953083 gtgtcaaggggtgtattgccacctaaggatgtctatctatcattactc 31953130  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 31976295 - 31976247
Alignment:
Q  1 gtgtcaaagggtgtattgccacctaagggtgtctatgtatgattactct 49  Q
    |||| ||||||| ||||||||||||||| ||||||||||| || |||||    
T  31976295 gtgttaaagggtatattgccacctaaggatgtctatgtatcataactct 31976247  T

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Target: scaffold0321 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 10163 - 10211
Alignment:
Q  2 tgtcaaagggtgtattgccacctaagggtgtctatgtatgattactctt 50  Q
    ||||||||| ||||||||||||||| ||||||||||||| || ||||||    
T  10163 tgtcaaaggatgtattgccacctaaaggtgtctatgtatcataactctt 10211  T

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Target: scaffold1268 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 987 - 1029
Alignment:
Q  6 aaagggtgtattgccacctaagggtgtctatgtatgattactc 48  Q
    ||||||||||||||||||||| | ||||||||||| |||||||    
T  987 aaagggtgtattgccacctaaagatgtctatgtatcattactc 1029  T

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Target: scaffold1267 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 987 - 1029
Alignment:
Q  6 aaagggtgtattgccacctaagggtgtctatgtatgattactc 48  Q
    ||||||||||||||||||||| | ||||||||||| |||||||    
T  987 aaagggtgtattgccacctaaagatgtctatgtatcattactc 1029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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