View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11436_low_40 (Length: 311)
Name: NF11436_low_40
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11436_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 45 - 204
Target Start/End: Original strand, 1411027 - 1411185
Alignment:
| Q |
45 |
tttaatctggagtgtcgatgctacatataacatacaacataaacagttaaataaaggaaaagggttttcaactttcaagcttcaacttcaaataattgaa |
144 |
Q |
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| T |
1411027 |
tttaatctggagcgtcgatgctacatataacatacaacataaacagttaaataaaggacaatggttt-caattttcaactttcaacttcaaataattgaa |
1411125 |
T |
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| Q |
145 |
ttcctgaacttgatgaacacaaagcactcagaaaagaagggtaggtagattcagaagcct |
204 |
Q |
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| T |
1411126 |
ttcctgaacttgatgaacacaaagcactcagaaaagaagggtaggtagattcagaagcct |
1411185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 1411220 - 1411278
Alignment:
| Q |
238 |
taactaccttaacagaattttaactaacaaaacaaacataccaggtttgaaattattga |
296 |
Q |
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| T |
1411220 |
taactaccttaacagaattttaactaacaaaacaaacataccaggtttgaaattattga |
1411278 |
T |
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