View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11436_low_43 (Length: 300)
Name: NF11436_low_43
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11436_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 10 - 284
Target Start/End: Complemental strand, 4123653 - 4123379
Alignment:
| Q |
10 |
atgaataaaaaggaacttcttagttttgaggttgatcaaaatgagtgtgatttttatggaaaatgtgggccatttggtaactgtgataattctgttgtgc |
109 |
Q |
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| T |
4123653 |
atgaataaaaaggaacttcttagatttgaggttgatcaaaatgagtgtgatttttatggaaaatgtgggccatttggtaactgtgataattctgttgtgc |
4123554 |
T |
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| Q |
110 |
caatttgtagttgttttgatgggtttgaggcaaagaattctgtggaatggagtttaggaaattggactaatggttgtgtgaggaaagagggattgaactt |
209 |
Q |
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| T |
4123553 |
caatttgtagttgttttgatgggtttgaggcaaagaattctgtggaatggagtttaggaaattggactaatggttgtgtgaggaaagagggattgaactt |
4123454 |
T |
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| Q |
210 |
gaagtgtgagatggtgaagaatggatcaactgtagttaagcaagatggatttaaggtgtatcataatatgaaagt |
284 |
Q |
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| T |
4123453 |
gaagtgtgagatggtgaagaatggatcaactgtagttaagcaagatggatttaaggtgtatcataatatgaaagt |
4123379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 10 - 282
Target Start/End: Complemental strand, 4153003 - 4152731
Alignment:
| Q |
10 |
atgaataaaaaggaacttcttagttttgaggttgatcaaaatgagtgtgatttttatggaaaatgtgggccatttggtaactgtgataattctgttgtgc |
109 |
Q |
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|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4153003 |
atgaataaaaaggaactttttagacttgaggttgatcaaaatgagtgtgatttttatggaaaatgtgggccatttggtaactgtgataattctactgtgc |
4152904 |
T |
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| Q |
110 |
caatttgtagttgttttgatgggtttgaggcaaagaattctgtggaatggagtttaggaaattggactaatggttgtgtgaggaaagagggattgaactt |
209 |
Q |
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| T |
4152903 |
caatttgtagttgttttgatgggtttgagccaaagaattctgtggaatggagtttaggcaattggactaatggttgtgtgaggaaagaaggaatgaactt |
4152804 |
T |
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| Q |
210 |
gaagtgtgagatggtgaagaatggatcaactgtagttaagcaagatggatttaaggtgtatcataatatgaaa |
282 |
Q |
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|||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4152803 |
aaagtgtgagatggtgaagaatggatcaagtatagttaaacaagatggatttaaggtgtatcataatatgaaa |
4152731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 12 - 282
Target Start/End: Complemental strand, 4144998 - 4144728
Alignment:
| Q |
12 |
gaataaaaaggaacttcttagttttgaggttgatcaaaatgagtgtgatttttatggaaaatgtgggccatttggtaactgtgataattctgttgtgcca |
111 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||| ||| |
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| T |
4144998 |
gaataaaaaggaactttttagacttgaggttgatcaaaatgagtgtgatttttatggaaaatgtgggccatttggaaattgtgataattctagtgtacca |
4144899 |
T |
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| Q |
112 |
atttgtagttgttttgatgggtttgaggcaaagaattctgtggaatggagtttaggaaattggactaatggttgtgtgaggaaagagggattgaacttga |
211 |
Q |
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|||||||||||||||||||||||| || |||||||||| ||||| ||||||||||||||||||||||||||||||||||| | ||| ||||||||||||| |
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| T |
4144898 |
atttgtagttgttttgatgggtttcagccaaagaattcggtggagtggagtttaggaaattggactaatggttgtgtgagaacagaaggattgaacttga |
4144799 |
T |
|
| Q |
212 |
agtgtgagatggtgaagaatggatcaactgtagttaagcaagatggatttaaggtgtatcataatatgaaa |
282 |
Q |
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||||||||||||||||||||||||||| | |||| || ||||||| |||| |||| |||||||||||||| |
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| T |
4144798 |
agtgtgagatggtgaagaatggatcaaatctagtgaaacaagatgcatttttggtgcatcataatatgaaa |
4144728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 12 - 284
Target Start/End: Complemental strand, 4134196 - 4133921
Alignment:
| Q |
12 |
gaataaaaaggaacttcttagttttgaggttgatcaaaatgagtgtgatttttatggaaaatgtgggccatttggtaactgtgataattctgttgtgcca |
111 |
Q |
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|||||||||||||| | |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||| ||| |
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| T |
4134196 |
gaataaaaaggaacattttagacttgaggtggatcaaaatgagtgtgatttttatggaaaatgtgggccatttggaaattgtgataattctagtgtacca |
4134097 |
T |
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| Q |
112 |
a---tttgtagttgttttgatgggtttgaggcaaagaattctgtggaatggagtttaggaaattggactaatggttgtgtgaggaaagagggattgaact |
208 |
Q |
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| |||||||||||||| | ||||||||| ||||||||| ||||||||||||| | | ||||||||||||||||||||||||| || ||| |||||| |
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| T |
4134096 |
aatatttgtagttgttttaaagggtttgagccaaagaatttggtggaatggagttcaaggaattggactaatggttgtgtgaggacagcaggaatgaact |
4133997 |
T |
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| Q |
209 |
tgaagtgtgagatggtgaagaatggatcaactgtagttaagcaagatggatttaaggtgtatcataatatgaaagt |
284 |
Q |
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|||||||||||||| |||||| ||||||| || | |||| |||||||| ||| |||| ||| ||||||||||| |
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| T |
4133996 |
tgaagtgtgagatgttgaagaccggatcaaatgaatttaaacaagatggttttttggtgaatcggaatatgaaagt |
4133921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 45 - 255
Target Start/End: Complemental strand, 4163321 - 4163108
Alignment:
| Q |
45 |
tcaaaatgagtgtgatttttatggaaaatgtgggccatttggtaactgtgataattctgttgtgccaa---tttgtagttgttttgatgggtttgaggca |
141 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| || ||||||| |||| ||| |||| |||||||||||||| | ||||||||| || |
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| T |
4163321 |
tcaaaacgagtgtgatttttatggaaaatgtgggccatttggaaattgtgatatttctagtgtaccaaatatttgtagttgttttaaagggtttgagcca |
4163222 |
T |
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| Q |
142 |
aagaattctgtggaatggagtttaggaaattggactaatggttgtgtgaggaaagagggattgaacttgaagtgtgagatggtgaagaatggatcaactg |
241 |
Q |
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||||||| ||||| ||||||| | | ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| | |
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| T |
4163221 |
aagaatttggtggagtggagttcaaggaattggactaatggttgtgtgaggaaagaaggaatgaacttgaagtgtgagatggtgaagaatggatcaagcg |
4163122 |
T |
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| Q |
242 |
tagttaagcaagat |
255 |
Q |
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||||||| |||||| |
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| T |
4163121 |
tagttaaacaagat |
4163108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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