View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11436_low_44 (Length: 280)

Name: NF11436_low_44
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11436_low_44
NF11436_low_44
[»] chr1 (1 HSPs)
chr1 (1-272)||(46809574-46809845)
[»] chr7 (7 HSPs)
chr7 (32-228)||(30298745-30298941)
chr7 (27-243)||(30303933-30304152)
chr7 (14-243)||(30286268-30286497)
chr7 (32-151)||(30291401-30291520)
chr7 (32-151)||(30314941-30315060)
chr7 (164-243)||(30291279-30291358)
chr7 (164-243)||(30314819-30314898)


Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 46809845 - 46809574
Alignment:
Q  1 tattacctcattgatctccacagaactgacaaatatatccaaatcttgaagttgtggatttttctctggggtaatctcaaagaacttgccaaacttgttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46809845 tattacctcattgatctccacagaactgacaaatatatccaaatcttgaagttgtggatttttctctggggtaatctcaaagaacttgccaaacttgttg 46809746  T
Q  101 gaatagagggggttgcggcttctcaagttgaagggtccagactcagaggatatgcttctctttgagcttgatttggcatgtctcctcagttcctcaatct 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46809745 gaatagagggggttgcggtttctcaagttgaagggtccagactcagaggatatgcttctctttgagcttgatttggcatgtctcctcagttcctcaatct 46809646  T
Q  201 gttctcttgacactttgactattgcattagcttcttggctctgttgtctccctttacgacctctcctttgct 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46809645 gttctcttgacactttgactattgcattagcttcttggctctgttgtctccctttacgacctctcctttgct 46809574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 32 - 228
Target Start/End: Complemental strand, 30298941 - 30298745
Alignment:
Q  32 aatatatccaaatcttgaagttgtggatttttctctggggtaatctcaaagaacttgccaaacttgttggaatagagggggttgcggcttctcaagttga 131  Q
    ||||||||||| |||| |||||||||||||||||| || || ||||||||||| |||||||||| |||||||||||  || | |||||||||||||||||    
T  30298941 aatatatccaagtctttaagttgtggatttttctccggagtgatctcaaagaagttgccaaactcgttggaatagataggttcgcggcttctcaagttga 30298842  T
Q  132 agggtccagactcagaggatatgcttctctttgagcttgatttggcatgtctcctcagttcctcaatctgttctcttgacactttgactattgcatt 228  Q
    | ||| |||| || ||||||   || ||  | ||||| ||||| |||||||| |||| ||||||||||||||||||||| |||||||||||| ||||    
T  30298841 atggtgcagattcggaggatccactccttctggagctagattttgcatgtctgctcaattcctcaatctgttctcttgatactttgactattacatt 30298745  T

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Target: chr7; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 27 - 243
Target Start/End: Complemental strand, 30304152 - 30303933
Alignment:
Q  27 tgacaaatatatccaaatcttgaagttgtggatttttctctggggtaatctcaaagaacttgccaaacttgttggaatagagggggttgcggcttctcaa 126  Q
    |||| ||||||||||| |||||||||||| |||||||||| || || ||||||||||| |||||||||| |||||||||||  || ||||| ||||||||    
T  30304152 tgactaatatatccaagtcttgaagttgttgatttttctccggagtgatctcaaagaagttgccaaactcgttggaatagataggtttgcgacttctcaa 30304053  T
Q  127 gttgaagggtccagactcagaggat---atgcttctctttgagcttgatttggcatgtctcctcagttcctcaatctgttctcttgacactttgactatt 223  Q
    |||||| ||| |||| || ||||||    | || ||  | ||||| |||||||||||||| |||| ||||||||||||||| ||||| ||||| ||||||    
T  30304052 gttgaatggtgcagattcggaggatgcactcctcctactagagctagatttggcatgtctgctcaattcctcaatctgttcccttgatacttttactatt 30303953  T
Q  224 gcattagcttcttggctctg 243  Q
     |||| ||||| ||||||||    
T  30303952 acatttgcttcctggctctg 30303933  T

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Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 14 - 243
Target Start/End: Complemental strand, 30286497 - 30286268
Alignment:
Q  14 atctccacagaactgacaaatatatccaaatcttgaagttgtggatttttctctggggtaatctcaaagaacttgccaaacttgttggaatagagggggt 113  Q
    |||||| || || |||| ||||||||||| |||| ||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||  || |    
T  30286497 atctccgcataattgaccaatatatccaagtctttaagctgtggatttttctctggggtgatctcaaagaaattgccaaacttgttggagtagataggtt 30286398  T
Q  114 tgcggcttctcaagttgaagggtccagactcagaggatatgcttctctttgagcttgatttggcatgtctcctcagttcctcaatctgttctcttgacac 213  Q
    |  || ||||||||||||  ||| |||| ||||| |||   || ||  | ||||| || ||||||| | | |||||||| ||||||||||||||||| ||    
T  30286397 tctggtttctcaagttgattggttcagattcagaagattcactccttctggagctagacttggcatttttgctcagttcttcaatctgttctcttgatac 30286298  T
Q  214 tttgactattgcattagcttcttggctctg 243  Q
    ||| |||||| |||| ||||| ||||||||    
T  30286297 ttttactattacatttgcttcctggctctg 30286268  T

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Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 151
Target Start/End: Complemental strand, 30291520 - 30291401
Alignment:
Q  32 aatatatccaaatcttgaagttgtggatttttctctggggtaatctcaaagaacttgccaaacttgttggaatagagggggttgcggcttctcaagttga 131  Q
    ||||||||||| ||||||||||||||||||||||| || || ||||||||||| |||||||||| |||||||||||  || |  ||||||||||||||||    
T  30291520 aatatatccaagtcttgaagttgtggatttttctccggagtgatctcaaagaagttgccaaactcgttggaatagataggttcacggcttctcaagttga 30291421  T
Q  132 agggtccagactcagaggat 151  Q
    | ||| |||| || ||||||    
T  30291420 atggtgcagattcggaggat 30291401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 151
Target Start/End: Complemental strand, 30315060 - 30314941
Alignment:
Q  32 aatatatccaaatcttgaagttgtggatttttctctggggtaatctcaaagaacttgccaaacttgttggaatagagggggttgcggcttctcaagttga 131  Q
    ||||||||||| ||||||||||||||||||||||| || || ||||||||||| |||||||||| |||||||||||  || |   |||||||||||||||    
T  30315060 aatatatccaagtcttgaagttgtggatttttctccggagtgatctcaaagaagttgccaaactcgttggaatagataggttcatggcttctcaagttga 30314961  T
Q  132 agggtccagactcagaggat 151  Q
    | ||| |||| || ||||||    
T  30314960 atggtgcagattcggaggat 30314941  T

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Target: chr7; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 30291358 - 30291279
Alignment:
Q  164 gagcttgatttggcatgtctcctcagttcctcaatctgttctcttgacactttgactattgcattagcttcttggctctg 243  Q
    ||||| |||||||||||||| |||| ||||||||||||||| |||||||||||||||||| |||| ||||| ||||||||    
T  30291358 gagctagatttggcatgtctgctcaattcctcaatctgttcccttgacactttgactattacatttgcttcctggctctg 30291279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 30314898 - 30314819
Alignment:
Q  164 gagcttgatttggcatgtctcctcagttcctcaatctgttctcttgacactttgactattgcattagcttcttggctctg 243  Q
    ||||| |||||||||||||| |||| ||||||||||||||| |||||||||||||||||| |||  ||||| ||||||||    
T  30314898 gagctagatttggcatgtctgctcaattcctcaatctgttcccttgacactttgactattacatctgcttcctggctctg 30314819  T

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