View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11436_low_45 (Length: 277)
Name: NF11436_low_45
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11436_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 25731923 - 25732164
Alignment:
| Q |
16 |
ataggtggggccgaataaatt-taatgtttaatggtgagataactcatgtttccattttgacacgatccaaatcctttaaaatccgatcaaatgaagtct |
114 |
Q |
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| T |
25731923 |
ataggtggggccgaataaattataatgtttaatggcgagataactcatgtttctattt-gacacaatccaaatcctttaaaatccgatcaaatgaagtct |
25732021 |
T |
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| Q |
115 |
cacttctcacttttgaaaacaacctcatagttattacaagcaagttcaaccatcttttgaccaaacacaaaccactccaacaatggcttcctcatcagaa |
214 |
Q |
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|| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25732022 |
ca-ttctcacttttgaaaacaacct-atagttattacaagcaagttcagccatcttttgaccaaacacaaaccactccaacaatggcttcctcatcagaa |
25732119 |
T |
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| Q |
215 |
acctcctccaccaacctccccttgaaaccaatcccaggaagctac |
259 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25732120 |
acctcctcaaccaacctccccttgaaaccaatcccaggaagctac |
25732164 |
T |
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