View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11436_low_49 (Length: 255)

Name: NF11436_low_49
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11436_low_49
NF11436_low_49
[»] chr1 (2 HSPs)
chr1 (23-241)||(15219880-15220099)
chr1 (23-241)||(15200898-15201117)
[»] chr5 (1 HSPs)
chr5 (23-241)||(37636045-37636264)
[»] chr4 (1 HSPs)
chr4 (25-241)||(16600251-16600468)
[»] scaffold0741 (1 HSPs)
scaffold0741 (23-241)||(4927-5146)
[»] chr3 (3 HSPs)
chr3 (28-241)||(27540494-27540708)
chr3 (23-241)||(20305318-20305536)
chr3 (88-176)||(25808996-25809084)
[»] scaffold0065 (1 HSPs)
scaffold0065 (23-241)||(40911-41130)
[»] chr7 (1 HSPs)
chr7 (24-241)||(26176087-26176302)
[»] chr6 (1 HSPs)
chr6 (25-241)||(7653538-7653755)
[»] chr8 (1 HSPs)
chr8 (134-188)||(15747671-15747725)
[»] chr2 (1 HSPs)
chr2 (88-176)||(12398689-12398777)


Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 23 - 241
Target Start/End: Original strand, 15219880 - 15220099
Alignment:
Q  23 gtaactgtgcccgctacccagacattacacttatccatctttgaagcaaacaaga-tttgtcataacctcttcctagggacatcatgcaccatgctcatg 121  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  15219880 gtaactgtgcccgctgcccagacattacacttatccatctctgaagcaaacaagaatttgtaataacctcttcctagggacatcatgcaccatgctcatg 15219979  T
Q  122 cagtcttacattgcttctgtaatttcgattcaatttcctttgtagagtatggcttctctcctttgtttgaaaccagacgtccccgtaggtttgtcttacc 221  Q
    ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||     
T  15219980 cagccttccattgcttctgtaatttcgattcaatttcctttgtagagtatggcttctctcctttgtttaaaaccagacgtccccgtaggttagtcttaca 15220079  T
Q  222 aaaattcattccacgttcat 241  Q
    ||||||||||||||||||||    
T  15220080 aaaattcattccacgttcat 15220099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 23 - 241
Target Start/End: Original strand, 15200898 - 15201117
Alignment:
Q  23 gtaactgtgcccgctacccagacattacacttatccatctttgaagcaaacaaga-tttgtcataacctcttcctagggacatcatgcaccatgctcatg 121  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  15200898 gtaactgtgcccgctgcccagacattacacttatccatctctgaagcaaacaagaatttgtaataacctcttcctagggacatcatgcaccatgctcatg 15200997  T
Q  122 cagtcttacattgcttctgtaatttcgattcaatttcctttgtagagtatggcttctctcctttgtttgaaaccagacgtccccgtaggtttgtcttacc 221  Q
    ||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||| ||||||||     
T  15200998 cagccttccattgcttctgtaatttcgattcaatttcctttgtagagtatggtttctctcctttgtttaaaaccagaagtccccgtaggtatgtcttaca 15201097  T
Q  222 aaaattcattccacgttcat 241  Q
    ||||||||||||||||||||    
T  15201098 aaaattcattccacgttcat 15201117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 23 - 241
Target Start/End: Original strand, 37636045 - 37636264
Alignment:
Q  23 gtaactgtgcccgctacccagacattacacttatccatctttgaagcaaacaagatttg-tcataacctcttcctagggacatcatgcaccatgctcatg 121  Q
    ||||||||||| ||| ||||||||||||| |||||||||| ||||||||| |||| ||  | |||||||||||| || |||||||||| |||||  | ||    
T  37636045 gtaactgtgcctgctgcccagacattacatttatccatctctgaagcaaagaagaattcataataacctcttccaagagacatcatgcgccatgaacctg 37636144  T
Q  122 cagtcttacattgcttctgtaatttcgattcaatttcctttgtagagtatggcttctctcctttgtttgaaaccagacgtccccgtaggtttgtcttacc 221  Q
    ||||||| || ||||| ||||||||||||||||| ||||||||||| || |  ||||||||||||||| |||||||||||||||||||||| |||||||     
T  37636145 cagtcttccagtgcttttgtaatttcgattcaatctcctttgtagaataggctttctctcctttgtttaaaaccagacgtccccgtaggttggtcttaca 37636244  T
Q  222 aaaattcattccacgttcat 241  Q
     |||||||||||||||||||    
T  37636245 gaaattcattccacgttcat 37636264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 25 - 241
Target Start/End: Original strand, 16600251 - 16600468
Alignment:
Q  25 aactgtgcccgctacccagacattacacttatccatctttgaagcaaacaagatttg-tcataacctcttcctagggacatcatgcaccatgctcatgca 123  Q
    ||||||||||||| || |||||||||| |||||||||| ||||||||| |||| ||  | |||||||||||| ||||||||||||  ||||| ||  |||    
T  16600251 aactgtgcccgctgcctagacattacatttatccatctctgaagcaaagaagaattcataataacctcttccgagggacatcatgtgccatgatcccgca 16600350  T
Q  124 gtcttacattgcttctgtaatttcgattcaatttcctttgtagagtatggcttctctcctttgtttgaaaccagacgtccccgtaggtttgtcttaccaa 223  Q
    ||||| || ||||||||||||||| ||||||| ||||||||||| || || ||||||||||||| | |||||||||||||||| ||||||||||||| ||    
T  16600351 gtcttccagtgcttctgtaatttcaattcaatctcctttgtagaatagggtttctctcctttgtgtaaaaccagacgtccccgaaggtttgtcttacaaa 16600450  T
Q  224 aattcattccacgttcat 241  Q
    ||||||||||| ||||||    
T  16600451 aattcattccatgttcat 16600468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0741 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0741
Description:

Target: scaffold0741; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 23 - 241
Target Start/End: Complemental strand, 5146 - 4927
Alignment:
Q  23 gtaactgtgcccgctacccagacattacacttatccatctttgaagcaaacaagatttg-tcataacctcttcctagggacatcatgcaccatgctcatg 121  Q
    ||||||||||| ||| ||||||||||||| |||||||||| ||||||||| |||| ||  | |||||||||||| || |||||||||| |||||  | ||    
T  5146 gtaactgtgcctgctgcccagacattacatttatccatctctgaagcaaagaagaattcataataacctcttccaagagacatcatgcgccatgaacttg 5047  T
Q  122 cagtcttacattgcttctgtaatttcgattcaatttcctttgtagagtatggcttctctcctttgtttgaaaccagacgtccccgtaggtttgtcttacc 221  Q
    ||||||| || ||||| ||||||||||||||||| ||||||||||| || |  |||||||||||||||  ||||||||||||||||||||| |||||||     
T  5046 cagtcttccagtgcttttgtaatttcgattcaatctcctttgtagaataggctttctctcctttgtttagaaccagacgtccccgtaggttggtcttaca 4947  T
Q  222 aaaattcattccacgttcat 241  Q
     |||||||||||||||||||    
T  4946 gaaattcattccacgttcat 4927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 28 - 241
Target Start/End: Original strand, 27540494 - 27540708
Alignment:
Q  28 tgtgcccgctacccagacattacacttatccatctttgaagcaaacaagatttg-tcataacctcttcctagggacatcatgcaccatgctcatgcagtc 126  Q
    |||||||||| |||| |||||||| |||||||||| ||||||||| |||| ||  | |||||||||||| ||||||||||| ||||||| || |||||||    
T  27540494 tgtgcccgctgcccatacattacatttatccatctctgaagcaaagaagaattcataataacctcttccgagggacatcatacaccatgatcctgcagtc 27540593  T
Q  127 ttacattgcttctgtaatttcgattcaatttcctttgtagagtatggcttctctcctttgtttgaaaccagacgtccccgtaggtttgtcttaccaaaat 226  Q
    || || ||||||||||||||| ||||||| ||||||||||| || |  ||||||||||||||| |||||| ||||||||| ||||| |||||||  ||||    
T  27540594 ttccagtgcttctgtaatttcaattcaatctcctttgtagaataggttttctctcctttgtttaaaaccatacgtccccgaaggttcgtcttacagaaat 27540693  T
Q  227 tcattccacgttcat 241  Q
    |||||||||||||||    
T  27540694 tcattccacgttcat 27540708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 23 - 241
Target Start/End: Original strand, 20305318 - 20305536
Alignment:
Q  23 gtaactgtgcccgctacccagacattacacttatccatctttgaagcaaacaagatttg-tcataacctcttcctagggacatcatgcaccatgctcatg 121  Q
    ||||||||||| ||| ||||||||||||| |||||||||| ||||||||| |||| ||  | |||||||||||| || |||||||||| |||||  | |     
T  20305318 gtaactgtgcctgctgcccagacattacatttatccatctctgaagcaaagaagaattcataataacctcttccaagagacatcatgcgccatgaaccta 20305417  T
Q  122 cagtcttacattgcttctgtaatttcgattcaatttcctttgtagagtatggcttctctcctttgtttgaaaccagacgtccccgtaggtttgtcttacc 221  Q
    ||||||| || ||||| ||||||||||||||||| ||||||||||| || |  ||||||||||||||| ||||||||||| |||||||||| |||||||     
T  20305418 cagtcttccagtgcttttgtaatttcgattcaatctcctttgtagaataggctttctctcctttgtttaaaaccagacgt-cccgtaggttggtcttaca 20305516  T
Q  222 aaaattcattccacgttcat 241  Q
     |||||||||||||||||||    
T  20305517 gaaattcattccacgttcat 20305536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 176
Target Start/End: Original strand, 25808996 - 25809084
Alignment:
Q  88 cctcttcctagggacatcatgcaccatgctcatgcagtcttacattgcttctgtaatttcgattcaatttcctttgtagagtatggctt 176  Q
    ||||||||||  |||||||||||||| || | ||| ||||| ||| ||||||| |||  ||||||||||||| || ||||  |||||||    
T  25808996 cctcttcctaaagacatcatgcaccaggcacctgccgtcttccatagcttctgcaatcgcgattcaatttcccttatagaaaatggctt 25809084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 23 - 241
Target Start/End: Complemental strand, 41130 - 40911
Alignment:
Q  23 gtaactgtgcccgctacccagacattacacttatccatctttgaagcaaacaagatttg-tcataacctcttcctagggacatcatgcaccatgctcatg 121  Q
    |||||||||||  || ||||||||||||| |||||||||| ||||||||| |||| ||  | |||||||||||| || |||||||||| |||||  | ||    
T  41130 gtaactgtgccttctgcccagacattacatttatccatctctgaagcaaagaagaattcataataacctcttccaagagacatcatgcgccatgaacctg 41031  T
Q  122 cagtcttacattgcttctgtaatttcgattcaatttcctttgtagagtatggcttctctcctttgtttgaaaccagacgtccccgtaggtttgtcttacc 221  Q
    ||||||| || ||||| ||||||||||||||||| ||||||||||| || |  |||||||||||| || |||| ||||||||| ||| ||| |||||||     
T  41030 cagtcttccagtgcttttgtaatttcgattcaatctcctttgtagaataggctttctctcctttgcttaaaactagacgtccctgtaagttggtcttaca 40931  T
Q  222 aaaattcattccacgttcat 241  Q
     |||||||||||||||||||    
T  40930 gaaattcattccacgttcat 40911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 24 - 241
Target Start/End: Complemental strand, 26176302 - 26176087
Alignment:
Q  24 taactgtgcccgctacccagacattacacttatccatctttgaagcaaacaagatttg-tcataacctcttcctagggacatcatgcaccatgctcatgc 122  Q
    |||||||||| ||| ||||||||   || |||||||||| ||||||||| |||| ||  | |||||||||||| || |||||||||| |||||  | |||    
T  26176302 taactgtgcctgctgcccagaca---catttatccatctctgaagcaaagaagaattcataataacctcttccaagagacatcatgcgccatgaacctgc 26176206  T
Q  123 agtcttacattgcttctgtaatttcgattcaatttcctttgtagagtatggcttctctcctttgtttgaaaccagacgtccccgtaggtttgtcttacca 222  Q
    |||||| || ||||| ||||||||||||||||| ||||||||||| || |  |||||||| |||||| ||||||||||||||| |||||| |||||||      
T  26176205 agtcttccagtgcttttgtaatttcgattcaatctcctttgtagaataggctttctctccattgtttaaaaccagacgtccccataggttggtcttactg 26176106  T
Q  223 aaattcattccacgttcat 241  Q
    |||||||||||||||||||    
T  26176105 aaattcattccacgttcat 26176087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 25 - 241
Target Start/End: Complemental strand, 7653755 - 7653538
Alignment:
Q  25 aactgtgcccgctacccagacattacacttatccatctttgaagcaaacaagatttg-tcataacctcttcctagggacatcatgcaccatgctcatgca 123  Q
    ||||||||||||| |||||||| |||| |||||||||| ||||||||| |||| ||  | ||||||||| || ||||||||||||  ||||| || ||||    
T  7653755 aactgtgcccgctgcccagacaatacatttatccatctctgaagcaaagaagaattcataataacctctcccgagggacatcatgtgccatgatcctgca 7653656  T
Q  124 gtcttacattgcttctgtaatttcgattcaatttcctttgtagagtatggcttctctcctttgtttgaaaccagacgtccccgtaggtttgtcttaccaa 223  Q
    ||||| || ||||| | ||||||| ||||||| ||||||||||| ||  | ||||||||||||| | ||||||||| |||||| ||||| |||||||  |    
T  7653655 gtcttccagtgcttatataatttcaattcaatctcctttgtagaatagagtttctctcctttgtgtaaaaccagacatccccgaaggttcgtcttacaga 7653556  T
Q  224 aattcattccacgttcat 241  Q
    ||||||||||| ||||||    
T  7653555 aattcattccatgttcat 7653538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 15747671 - 15747725
Alignment:
Q  134 gcttctgtaatttcgattcaatttcctttgtagagtatggcttctctcctttgtt 188  Q
    ||||||||||||| |||||||||||||||||||| || ||||| |||||||||||    
T  15747671 gcttctgtaattttgattcaatttcctttgtagaatagggcttgtctcctttgtt 15747725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 176
Target Start/End: Original strand, 12398689 - 12398777
Alignment:
Q  88 cctcttcctagggacatcatgcaccatgctcatgcagtcttacattgcttctgtaatttcgattcaatttcctttgtagagtatggctt 176  Q
    ||||||||||  |||||||||| ||| || | ||| ||||| ||| ||||||| |||  ||||||||||||| |||||||  |||||||    
T  12398689 cctcttcctaaagacatcatgcgccaggcacctgctgtcttccatagcttctgcaatcgcgattcaatttcccttgtagaaaatggctt 12398777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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