View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11436_low_5 (Length: 661)
Name: NF11436_low_5
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11436_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 2e-88; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 32266195 - 32266026
Alignment:
| Q |
18 |
aagaaatctatgagaatggtagcaaatgtttgaaatatgagttttttgattatgaaaaggacaatgatatttcttatgattcaacaacagatgttgagag |
117 |
Q |
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| T |
32266195 |
aagaaatctatgagaatggtagcaaaagtttgaaatatgagttttttgattatgaaaaggacaatgatatttcttatgattcaacaacagatgttgagag |
32266096 |
T |
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| Q |
118 |
tgatgaagaaaacagttcagaaagtgattcttttcctgctgcaaaatctcataacagtaaagctgtgaat |
187 |
Q |
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| T |
32266095 |
tgatgaagaaaacagttcagaaagtgattcttttcctgctgcaaaatctcataacagtaaagctgtgaat |
32266026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 396 - 625
Target Start/End: Complemental strand, 32265826 - 32265594
Alignment:
| Q |
396 |
ttccttgtttgattgatctcaatctacctgctcctgttgatgaataagggaaatggcttaatgggttatcttggtttttacttttacatcattttttgaa |
495 |
Q |
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| T |
32265826 |
ttccttgtttgattgatctcaatctacctgctcctgttgatgaataagggaaatggcttaatgggttatcttggtttttacttttacatcattttttgaa |
32265727 |
T |
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| Q |
496 |
gcatcttcttctattgaggtacattgatgaatatcttgaattttaagaatgnnnnnnnnnnnnnnnnngt---tggcattatcacatatgatgaaagcat |
592 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
32265726 |
gcatcttcttctattgaggtacattgatgaatatcttgaattttaagaattgttttttttttctttttttttttggcattatcacatatgatgaaagcat |
32265627 |
T |
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| Q |
593 |
ttgcaatgtacagaaagccatgtgggttaatga |
625 |
Q |
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| T |
32265626 |
ttgcaatgtacagaaagccatgtgggttaatga |
32265594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 257 - 367
Target Start/End: Complemental strand, 32265956 - 32265846
Alignment:
| Q |
257 |
tatgaatgtccaatttgttataaaattttcaggtcaggacaagcattaggaggacataaaagatcacattttgttggaggatctgaagagaacacttttg |
356 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32265956 |
tatgaatgtccaatttgctacaaaattttcaggtcaggacaagcattaggaggacataaaagatcacattttgttggaggatctgaagagaacacttttg |
32265857 |
T |
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| Q |
357 |
tgatcaaacaa |
367 |
Q |
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||||||||||| |
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| T |
32265856 |
tgatcaaacaa |
32265846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 258 - 360
Target Start/End: Complemental strand, 19300482 - 19300380
Alignment:
| Q |
258 |
atgaatgtccaatttgttataaaattttcaggtcaggacaagcattaggaggacataaaagatcacattttgttggaggatctgaagagaacacttttgt |
357 |
Q |
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|||||||||||||||| | || ||||||| |||||||||||| ||||| || || |||||||| |||||| |||||||| ||| || |||||| |||| |
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| T |
19300482 |
atgaatgtccaatttgcaacaagattttcaagtcaggacaagctttagggggtcacaaaagatcccattttattggaggaaatgatgataacactcttgt |
19300383 |
T |
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| Q |
358 |
gat |
360 |
Q |
| |
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||| |
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|
| T |
19300382 |
gat |
19300380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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