View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11436_low_51 (Length: 252)

Name: NF11436_low_51
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11436_low_51
NF11436_low_51
[»] chr6 (1 HSPs)
chr6 (3-140)||(34993756-34993893)
[»] chr4 (1 HSPs)
chr4 (156-238)||(2704513-2704595)
[»] chr8 (1 HSPs)
chr8 (156-236)||(4108879-4108959)
[»] chr2 (4 HSPs)
chr2 (157-244)||(41643874-41643961)
chr2 (197-244)||(6177817-6177864)
chr2 (197-244)||(18779360-18779407)
chr2 (156-244)||(34441880-34441968)
[»] chr5 (1 HSPs)
chr5 (197-244)||(10237456-10237503)
[»] chr3 (1 HSPs)
chr3 (156-244)||(40640593-40640681)
[»] chr1 (2 HSPs)
chr1 (197-239)||(10758264-10758306)
chr1 (156-235)||(13876887-13876966)
[»] scaffold0200 (1 HSPs)
scaffold0200 (200-244)||(24776-24820)


Alignment Details
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 3 - 140
Target Start/End: Original strand, 34993756 - 34993893
Alignment:
Q  3 tatattttattctccatataataaagaattttatgtagaaagtgtttatctaaaaaataaagctgcattataaaacaattttttatacaaggaagaaatt 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  34993756 tatattttattctccatataataaagaattttatgtagaaagtgtttatcaaaaaaataaagctgcgttataaaacaatcttttatacaaggaagaaatt 34993855  T
Q  103 ccatagtttgtgtattaatagcttgcacaactttataa 140  Q
    |||||||| |||||||||| |||||| || ||||||||    
T  34993856 ccatagttcgtgtattaattgcttgcccagctttataa 34993893  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 238
Target Start/End: Original strand, 2704513 - 2704595
Alignment:
Q  156 gaaaattttatggtgaagtcaagaaaatgannnnnnnggtaaagttaaatggtcaatcattgagtatttatatatttaattca 238  Q
    ||||||||||||||||||||| ||||||||       ||| |||||||||| ||||||||||| ||||| | |||||||||||    
T  2704513 gaaaattttatggtgaagtcatgaaaatgacttttctggtgaagttaaatgatcaatcattgaatatttgtgtatttaattca 2704595  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 4108959 - 4108879
Alignment:
Q  156 gaaaattttatggtgaagtcaagaaaatgannnnnnnggtaaagttaaatggtcaatcattgagtatttatatatttaatt 236  Q
    ||||||||||||||||||||| ||||||||       ||||||||||||||  |||||||||| ||||| | |||||||||    
T  4108959 gaaaattttatggtgaagtcatgaaaatgacttttttggtaaagttaaatgaccaatcattgaatatttgtgtatttaatt 4108879  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 244
Target Start/End: Original strand, 41643874 - 41643961
Alignment:
Q  157 aaaattttatggtgaagtcaagaaaatgannnnnnnggtaaagttaaatggtcaatcattgagtatttatatatttaattcatctcac 244  Q
    |||||| ||||||||||||| || |||||       ||| ||||||||||||||||||||||| |||| | |||||||||||| ||||    
T  41643874 aaaattctatggtgaagtcatgataatgacttttttggtgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcac 41643961  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 244
Target Start/End: Original strand, 6177817 - 6177864
Alignment:
Q  197 aagttaaatggtcaatcattgagtatttatatatttaattcatctcac 244  Q
    ||||||||||||||||||||||| |||| | |||||||||||| ||||    
T  6177817 aagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcac 6177864  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 18779407 - 18779360
Alignment:
Q  197 aagttaaatggtcaatcattgagtatttatatatttaattcatctcac 244  Q
    ||||||||||||||||||||||| |||| | |||||||||||| ||||    
T  18779407 aagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcac 18779360  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 244
Target Start/End: Complemental strand, 34441968 - 34441880
Alignment:
Q  156 gaaaattttatggtgaagtcaagaaaatgannnnnnnggtaaagttaaatggtcaatcattgagtatttatatatttaattcatctcac 244  Q
    ||||||| ||||||||||||| ||||||||       ||||||||||||||  |||| ||||| ||||| | |||||||||||| ||||    
T  34441968 gaaaattctatggtgaagtcatgaaaatgacttttttggtaaagttaaatgaccaattattgaatatttgtgtatttaattcatgtcac 34441880  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 244
Target Start/End: Original strand, 10237456 - 10237503
Alignment:
Q  197 aagttaaatggtcaatcattgagtatttatatatttaattcatctcac 244  Q
    ||||||||||||||||||||||| |||| | |||||||||||| ||||    
T  10237456 aagttaaatggtcaatcattgagcatttgtgtatttaattcatttcac 10237503  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 244
Target Start/End: Complemental strand, 40640681 - 40640593
Alignment:
Q  156 gaaaattttatggtgaagtcaagaaaatgannnnnnnggtaaagttaaatggtcaatcattgagtatttatatatttaattcatctcac 244  Q
    ||||||| ||||||||||||| || |||||       ||| ||||||||||||||||||||||| |||| | |||||||| ||| ||||    
T  40640681 gaaaattctatggtgaagtcatgagaatgacttttctggtgaagttaaatggtcaatcattgagcatttgtgtatttaatccatgtcac 40640593  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 10758306 - 10758264
Alignment:
Q  197 aagttaaatggtcaatcattgagtatttatatatttaattcat 239  Q
    ||||||||||||||||||||||| |||| | ||||||||||||    
T  10758306 aagttaaatggtcaatcattgagcatttgtgtatttaattcat 10758264  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 13876966 - 13876887
Alignment:
Q  156 gaaaattttatggtgaagtcaagaaaatgannnnnnnggtaaagttaaatggtcaatcattgagtatttatatatttaat 235  Q
    ||||||| ||||||||||| | ||||||||       ||| |||||||||| ||||||||||||||||| | ||||||||    
T  13876966 gaaaattctatggtgaagttatgaaaatgacttttatggtgaagttaaatgatcaatcattgagtatttgtgtatttaat 13876887  T

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Target: scaffold0200 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 24820 - 24776
Alignment:
Q  200 ttaaatggtcaatcattgagtatttatatatttaattcatctcac 244  Q
    |||||||||||||||||||| |||| | |||||||||||| ||||    
T  24820 ttaaatggtcaatcattgagcatttgtgtatttaattcatgtcac 24776  T

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