View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11436_low_55 (Length: 245)
Name: NF11436_low_55
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11436_low_55 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0015 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 5 - 245
Target Start/End: Original strand, 33385614 - 33385855
Alignment:
| Q |
5 |
ttcagaatggctaaaacagaaagttcacaatcggtgctcgacattggttctcatctcataagtcaagatcaatctttttgaaaa-aataattggaaatca |
103 |
Q |
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| T |
33385614 |
ttcagaatggctaaaacagaaagttcacaatcgatgctcgacattgattctcatctcataagtcaagatcaatctttttgaaaaaaataattggaaatca |
33385713 |
T |
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| Q |
104 |
actgtactaaaggttgctgattaggtagatcataattgcaagtcaagagatgcaaaagattgaagttctaaagatcataagcaaattagattgacataaa |
203 |
Q |
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| T |
33385714 |
attgtactaaaggttgcagattaggtagatcataattgcaagtcaagagatgcaaaagattgaagttataaagatcataagcaaattagaatgacataaa |
33385813 |
T |
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| Q |
204 |
aagcagagattcaaaaaacgccaaaataattgatggaagaaa |
245 |
Q |
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| T |
33385814 |
aagcaatgattcaaaaaacaccaaaataattgatggaagaaa |
33385855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 187
Target Start/End: Original strand, 17630932 - 17631067
Alignment:
| Q |
52 |
ttctcatctcataagtcaagatcaatctttttgaaaaaataattggaaatcaactgtactaaaggttgctgattaggtagatcataattgcaagtcaaga |
151 |
Q |
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| T |
17630932 |
ttctcatctcataagtcaagatcaacgtttttgaagaaaaaatagaaaatcaagcgtactttaggttatgaattaggtagattagaatattaagtcaaag |
17631031 |
T |
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| Q |
152 |
gatgcaaaagattgaagttctaaagatcataagcaa |
187 |
Q |
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| T |
17631032 |
gttgcaaatgattgaaattctaaagatcaaaagcaa |
17631067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 186
Target Start/End: Complemental strand, 19412005 - 19411831
Alignment:
| Q |
12 |
tggctaaaacagaaagttcacaatcggtgctcgacattggttctcatctcataagtcaagatcaatctttttgaaaaaataattggaaatcaactgtact |
111 |
Q |
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| T |
19412005 |
tggctaaaatagaaagttcagaattggtgttcaacattgattctcatctcaaaagtcaagatcaagctttttgatgaaaggaatggaaatcaattgtgct |
19411906 |
T |
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| Q |
112 |
aaaggttgctgattaggtagatcataattgcaagtcaagagatgcaaaagattgaagttctaaagatcataagca |
186 |
Q |
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| T |
19411905 |
tgaggatacagatcaggtagattagaatttcaagttaagggattcaaaagattgaagttctaaagatcaaaagca |
19411831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 216
Target Start/End: Original strand, 55101 - 55202
Alignment:
| Q |
114 |
aggttgctgattaggtagatcataattgcaagtcaagagatgcaaaagattgaagttctaaagatcataagcaaattagattgacataaaaagcagagat |
213 |
Q |
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| T |
55101 |
aggttgcagatcaggtagattagaattgca-gtcaagggatacaaagggttgaagttctaaagatcagaagcatatcagaatgacattagaagcagagat |
55199 |
T |
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| Q |
214 |
tca |
216 |
Q |
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| T |
55200 |
tca |
55202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 216
Target Start/End: Complemental strand, 57737 - 57636
Alignment:
| Q |
114 |
aggttgctgattaggtagatcataattgcaagtcaagagatgcaaaagattgaagttctaaagatcataagcaaattagattgacataaaaagcagagat |
213 |
Q |
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| T |
57737 |
aggttgcagatcaggtagattagaattgca-gtcaagggatacaaagggttgaagttctaaagatcagaagcatatcagaatgacattagaagcagagat |
57639 |
T |
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| Q |
214 |
tca |
216 |
Q |
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||| |
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| T |
57638 |
tca |
57636 |
T |
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