View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11436_low_58 (Length: 238)
Name: NF11436_low_58
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11436_low_58 |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 7e-76; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 76 - 223
Target Start/End: Complemental strand, 4049623 - 4049476
Alignment:
| Q |
76 |
ctttgcctttacagttaaatagaaggtctatacttggattacctttagaaagtcaagcaaatgtgagatcaccagccattgcgataaagcaagaaaaggt |
175 |
Q |
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| T |
4049623 |
ctttgcctttacagttaaatagaaggtctatacttggattacctttagaaagtcaagcaaatgtgagatcaccagccattgtgataaagcaagaaaaggt |
4049524 |
T |
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| Q |
176 |
atgaacaacatctgttttcattttatattggattctcaatctgatatt |
223 |
Q |
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| T |
4049523 |
atgaacaacatctgttttcattttatattggattctcaatctgatatt |
4049476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 4049740 - 4049663
Alignment:
| Q |
1 |
ttcataagctcttcacctcagaatagcttattttcataaactctacataatagcttcttctaactatgtcaacctctt |
78 |
Q |
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| T |
4049740 |
ttcataagctcttcacctcagaatagcttattttcataaactctacataatagcttcttctaactatgtcaacctctt |
4049663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 125
Target Start/End: Complemental strand, 36172477 - 36172434
Alignment:
| Q |
82 |
ctttacagttaaatagaaggtctatacttggattacctttagaa |
125 |
Q |
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| T |
36172477 |
ctttatagttaaatagaaggtctaaacttggattgcctttagaa |
36172434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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