View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11436_low_6 (Length: 643)

Name: NF11436_low_6
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11436_low_6
NF11436_low_6
[»] chr8 (8 HSPs)
chr8 (31-220)||(27624893-27625077)
chr8 (236-460)||(27624704-27624931)
chr8 (514-579)||(27624636-27624701)
chr8 (507-579)||(12361131-12361204)
chr8 (507-558)||(24558814-24558865)
chr8 (573-632)||(27624571-27624630)
chr8 (497-579)||(41620339-41620422)
chr8 (331-391)||(27727907-27727967)
[»] chr1 (7 HSPs)
chr1 (507-558)||(28467365-28467416)
chr1 (518-557)||(10439648-10439687)
chr1 (518-579)||(4200168-4200230)
chr1 (507-543)||(7218132-7218168)
chr1 (507-543)||(15361689-15361725)
chr1 (507-543)||(25006092-25006128)
chr1 (507-543)||(29007774-29007810)
[»] chr7 (2 HSPs)
chr7 (485-543)||(24895332-24895390)
chr7 (507-543)||(24909640-24909676)
[»] chr4 (3 HSPs)
chr4 (509-558)||(4071843-4071892)
chr4 (507-543)||(49219115-49219151)
chr4 (409-449)||(52169964-52170004)
[»] chr2 (4 HSPs)
chr2 (507-579)||(17952759-17952832)
chr2 (507-558)||(11513859-11513910)
chr2 (511-579)||(3423830-3423899)
chr2 (519-567)||(8017386-8017434)
[»] chr5 (3 HSPs)
chr5 (508-567)||(42181151-42181211)
chr5 (507-543)||(34205215-34205251)
chr5 (512-579)||(35135725-35135793)
[»] chr3 (5 HSPs)
chr3 (508-580)||(2865718-2865790)
chr3 (507-558)||(32555039-32555090)
chr3 (505-543)||(28779332-28779370)
chr3 (518-574)||(1395615-1395672)
chr3 (487-532)||(42753593-42753638)


Alignment Details
Target: chr8 (Bit Score: 142; Significance: 3e-74; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 31 - 220
Target Start/End: Complemental strand, 27625077 - 27624893
Alignment:
Q  31 aggccaaccttcttcgaaacattattgatattaaagttctaaattgcattacagttacggatcacagtcaaaagcgcagcggcttatgcgaccttaatta 130  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||      |||||||||||||||||||    
T  27625077 aggccaaccttctctgaaacattattgatattaaagttctaaattgcattacggttacagatcacagtcaaaagca-----gcttatgcgaccttaatta 27624983  T
Q  131 gggttgcagagatgtcacccaaattaaggccttgaccaaaattactttaccttatcatgacattgaattttgaacatagttgatacaaaa 220  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27624982 gggttgcagagatgtcacccaaattaaggccctgaccaaaattactttaccttatcatgacattgaattttgaacatagttaatacaaaa 27624893  T

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Target: chr8; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 236 - 460
Target Start/End: Complemental strand, 27624931 - 27624704
Alignment:
Q  236 ttatcatgacgttgaatttctgaacatagttagtacaaaacaaggaaaca--atgcagtaaatccctgcaatatagtgtcaggtcttgcatttgcttttg 333  Q
    |||||||||| |||||||| |||||||||||| |||||||||||||||||  ||||| |||||| ||||||||||||||||||||    | |||| ||||    
T  27624931 ttatcatgacattgaattt-tgaacatagttaatacaaaacaaggaaacatgatgcaataaatctctgcaatatagtgtcaggtccacaacttgcatttg 27624833  T
Q  334 catatgaaaaagactcattccattacttagatatgtatctcttagtacatgtttggatgga--tctttaaatttatcatctatttacataagcacttgtt 431  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||  | ||||||||||||||||||| |||||||||||||||    
T  27624832 catatgaaaaagactgattccattacttagatatgtatctcttagtacaggtttggattgatttatttaaatttatcatctattgacataagcacttgtt 27624733  T
Q  432 atgagactgtttaagagagcttatgttta 460  Q
    ||||||||||| ||||||||||| |||||    
T  27624732 atgagactgttcaagagagcttacgttta 27624704  T

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Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 514 - 579
Target Start/End: Complemental strand, 27624701 - 27624636
Alignment:
Q  514 cttttagcttatatgaaaataatttgacttcgtttaatcttttgtataaaaataccttatatataa 579  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  27624701 cttttagcttatatgaaaataatttgactccgtttaatcttttgtataaaaataccttatgtataa 27624636  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 507 - 579
Target Start/End: Complemental strand, 12361204 - 12361131
Alignment:
Q  507 aaaacaacttttagcttatatgaaaataatttgacttcgtttaatcttt-tgtataaaaataccttatatataa 579  Q
    |||||| ||| ||||||||||||||| ||||||||||| ||| |||||| | |||| ||||| |||||||||||    
T  12361204 aaaacagcttatagcttatatgaaaacaatttgacttcattttatctttatttatagaaataacttatatataa 12361131  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 558
Target Start/End: Complemental strand, 24558865 - 24558814
Alignment:
Q  507 aaaacaacttttagcttatatgaaaataatttgacttcgtttaatcttttgt 558  Q
    |||||||||| ||||||||| ||||||||||| |||||| || |||||||||    
T  24558865 aaaacaacttatagcttatacgaaaataatttaacttcggtttatcttttgt 24558814  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 573 - 632
Target Start/End: Complemental strand, 27624630 - 27624571
Alignment:
Q  573 tatataataagcgcttatactataagccacctaatttgtttattctaagccacatttcat 632  Q
    |||||||||||| | ||||||||||||| | ||||||||| |  ||||||||||||||||    
T  27624630 tatataataagctcctatactataagccgcttaatttgttaaccctaagccacatttcat 27624571  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 579
Target Start/End: Original strand, 41620339 - 41620422
Alignment:
Q  497 atagcttgcaaaaacaacttttagcttatatgaaaataatttgacttcgtttaatcttttg-tataaaaataccttatatataa 579  Q
    |||||||  ||||||| |||||||  |||||||| ||||||||||||  ||| |||||||| || ||||||| |||||||||||    
T  41620339 atagcttataaaaacagcttttagaatatatgaacataatttgactttattttatcttttgttacaaaaataacttatatataa 41620422  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 331 - 391
Target Start/End: Original strand, 27727907 - 27727967
Alignment:
Q  331 ttgcatatgaaaaagactcattccattacttagatatgtatctcttagtacatgtttggat 391  Q
    |||||| ||||||||||| ||| ||| ||| | || ||||||||||||| |||||||||||    
T  27727907 ttgcatttgaaaaagactgattgcatgactcaaatttgtatctcttagtgcatgtttggat 27727967  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 507 - 558
Target Start/End: Original strand, 28467365 - 28467416
Alignment:
Q  507 aaaacaacttttagcttatatgaaaataatttgacttcgtttaatcttttgt 558  Q
    |||||||||| ||||||||||||||||||||||||||  ||| |||||||||    
T  28467365 aaaacaacttgtagcttatatgaaaataatttgactttattttatcttttgt 28467416  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 518 - 557
Target Start/End: Complemental strand, 10439687 - 10439648
Alignment:
Q  518 tagcttatatgaaaataatttgacttcgtttaatcttttg 557  Q
    ||||||||||||||||||||||||||| ||| ||||||||    
T  10439687 tagcttatatgaaaataatttgacttcattttatcttttg 10439648  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 518 - 579
Target Start/End: Complemental strand, 4200230 - 4200168
Alignment:
Q  518 tagcttatatgaaaataatttgacttcgtttaatcttttg-tataaaaataccttatatataa 579  Q
    ||||||||||||||| || |||||||  ||| |||||||| |||||||||| |||||||||||    
T  4200230 tagcttatatgaaaacaacttgactttattttatcttttgttataaaaataacttatatataa 4200168  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 543
Target Start/End: Original strand, 7218132 - 7218168
Alignment:
Q  507 aaaacaacttttagcttatatgaaaataatttgactt 543  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  7218132 aaaacaacttatagcttatatgaaaacaatttgactt 7218168  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 543
Target Start/End: Complemental strand, 15361725 - 15361689
Alignment:
Q  507 aaaacaacttttagcttatatgaaaataatttgactt 543  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  15361725 aaaacagcttatagcttatatgaaaataatttgactt 15361689  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 543
Target Start/End: Original strand, 25006092 - 25006128
Alignment:
Q  507 aaaacaacttttagcttatatgaaaataatttgactt 543  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  25006092 aaaacaacttatagcttatatgaaaacaatttgactt 25006128  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 543
Target Start/End: Original strand, 29007774 - 29007810
Alignment:
Q  507 aaaacaacttttagcttatatgaaaataatttgactt 543  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  29007774 aaaacaacttatagcttatatgaaaatagtttgactt 29007810  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 485 - 543
Target Start/End: Complemental strand, 24895390 - 24895332
Alignment:
Q  485 aagctctctataatagcttgcaaaaacaacttttagcttatatgaaaataatttgactt 543  Q
    |||||||| | |||| ||||  |||||||||| ||||||||||||||||||||||||||    
T  24895390 aagctctccacaatatcttgtgaaaacaacttatagcttatatgaaaataatttgactt 24895332  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 507 - 543
Target Start/End: Complemental strand, 24909676 - 24909640
Alignment:
Q  507 aaaacaacttttagcttatatgaaaataatttgactt 543  Q
    |||||||||| ||||||||||||||||||||||||||    
T  24909676 aaaacaacttatagcttatatgaaaataatttgactt 24909640  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 509 - 558
Target Start/End: Complemental strand, 4071892 - 4071843
Alignment:
Q  509 aacaacttttagcttatatgaaaataatttgacttcgtttaatcttttgt 558  Q
    |||||||| ||||||||||||||||||||||||||  ||| |||||||||    
T  4071892 aacaacttatagcttatatgaaaataatttgactttattttatcttttgt 4071843  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 507 - 543
Target Start/End: Complemental strand, 49219151 - 49219115
Alignment:
Q  507 aaaacaacttttagcttatatgaaaataatttgactt 543  Q
    |||||||||| ||||||||||||||||||||||||||    
T  49219151 aaaacaacttatagcttatatgaaaataatttgactt 49219115  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 409 - 449
Target Start/End: Original strand, 52169964 - 52170004
Alignment:
Q  409 atctatttacataagcacttgttatgagactgtttaagaga 449  Q
    ||||||||||||||||||||||  || ||||||||||||||    
T  52169964 atctatttacataagcacttgtggtgggactgtttaagaga 52170004  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 507 - 579
Target Start/End: Original strand, 17952759 - 17952832
Alignment:
Q  507 aaaacaacttttagcttatatgaaaataatttgacttcgtttaatcttttg-tataaaaataccttatatataa 579  Q
    |||||| ||| ||||||||||||||||| ||||||||  ||| |||||||| |||| ||||| |||||||||||    
T  17952759 aaaacatcttgtagcttatatgaaaatagtttgactttattttatcttttgttatagaaatagcttatatataa 17952832  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 558
Target Start/End: Complemental strand, 11513910 - 11513859
Alignment:
Q  507 aaaacaacttttagcttatatgaaaataatttgacttcgtttaatcttttgt 558  Q
    |||||||||| ||||||||||||||| ||||||||||  ||| |||||||||    
T  11513910 aaaacaacttatagcttatatgaaaacaatttgactttattttatcttttgt 11513859  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 579
Target Start/End: Original strand, 3423830 - 3423899
Alignment:
Q  511 caacttttagcttatatgaaaataatttgacttcgtttaatctttt-gtataaaaataccttatatataa 579  Q
    |||||| ||| ||||||||||||||||||||||  ||| ||||||| ||| ||||||| |||||| ||||    
T  3423830 caacttataggttatatgaaaataatttgactttattttatcttttggtacaaaaataacttatacataa 3423899  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 519 - 567
Target Start/End: Complemental strand, 8017434 - 8017386
Alignment:
Q  519 agcttatatgaaaataatttgacttcgtttaatcttttgtataaaaata 567  Q
    |||||||||||||||||||| |||| |||| ||| |||||||| |||||    
T  8017434 agcttatatgaaaataatttaactttgttttatcctttgtatagaaata 8017386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 508 - 567
Target Start/End: Original strand, 42181151 - 42181211
Alignment:
Q  508 aaacaacttttagcttatatgaaaataatttgacttcgtttaatcttttg-tataaaaata 567  Q
    ||||||||| |||||||||||||||  ||||||||| |||| |||||||| ||||||||||    
T  42181151 aaacaacttatagcttatatgaaaaccatttgactttgttttatcttttgttataaaaata 42181211  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 543
Target Start/End: Complemental strand, 34205251 - 34205215
Alignment:
Q  507 aaaacaacttttagcttatatgaaaataatttgactt 543  Q
    |||||||||| |||||||||| |||||||||||||||    
T  34205251 aaaacaacttatagcttatataaaaataatttgactt 34205215  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 512 - 579
Target Start/End: Original strand, 35135725 - 35135793
Alignment:
Q  512 aacttttagcttatatgaaaataatttgacttcgtttaatcttttg-tataaaaataccttatatataa 579  Q
    ||||| ||||||||||||||||| ||||||||  ||| |||||||| |||| ||||| |||||| ||||    
T  35135725 aacttatagcttatatgaaaatagtttgactttattttatcttttgttatagaaatatcttatacataa 35135793  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 508 - 580
Target Start/End: Original strand, 2865718 - 2865790
Alignment:
Q  508 aaacaacttttagcttatatgaaaataatttgacttcgtttaatcttttgtataaaaataccttatatataat 580  Q
    ||||||||| ||| ||||||||||| |||||||||| |||| | ||||  |||| ||||| ||||||||||||    
T  2865718 aaacaacttataggttatatgaaaacaatttgactttgttttaactttgttatagaaatagcttatatataat 2865790  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 558
Target Start/End: Original strand, 32555039 - 32555090
Alignment:
Q  507 aaaacaacttttagcttatatgaaaataatttgacttcgtttaatcttttgt 558  Q
    |||||||||| ||||||||| ||||||||||||||||  ||| |||||||||    
T  32555039 aaaacaacttatagcttataggaaaataatttgactttattttatcttttgt 32555090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 505 - 543
Target Start/End: Complemental strand, 28779370 - 28779332
Alignment:
Q  505 caaaaacaacttttagcttatatgaaaataatttgactt 543  Q
    |||||||||||| ||||||||||||||||| ||||||||    
T  28779370 caaaaacaacttatagcttatatgaaaatagtttgactt 28779332  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 518 - 574
Target Start/End: Complemental strand, 1395672 - 1395615
Alignment:
Q  518 tagcttatatgaaaataatttgacttcgtttaatcttttg-tataaaaataccttata 574  Q
    ||||||||||||||||||||||||||  ||| |||||||| |||| ||||| ||||||    
T  1395672 tagcttatatgaaaataatttgactttattttatcttttgttatagaaatagcttata 1395615  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 532
Target Start/End: Complemental strand, 42753638 - 42753593
Alignment:
Q  487 gctctctataatagcttgcaaaaacaacttttagcttatatgaaaa 532  Q
    ||||||||  |||||||| ||||||||||| |||||||||||||||    
T  42753638 gctctctaggatagcttgtaaaaacaacttatagcttatatgaaaa 42753593  T

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