View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11436_low_64 (Length: 217)
Name: NF11436_low_64
Description: NF11436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11436_low_64 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 5034210 - 5034011
Alignment:
| Q |
1 |
agtgtgtcttgaaataatagtgatttgttcaaatttgtctatagcatttttatggccaatcagtttaacttgtcacacattaactatacaaaggcagata |
100 |
Q |
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| T |
5034210 |
agtgtgtcttgaaataatagtgatttgttcaaatttgtctatagcatttttatggccaatgagtttaacttgtcacacattaactatacaaaggcagata |
5034111 |
T |
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| Q |
101 |
taattttgagaggatactgtggttggaattcaaggcgtgctgttcaggttctggatacaatatttcccaatgtatcgatcatttgtgttacatgtctgtg |
200 |
Q |
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| T |
5034110 |
taattttgagaggatactgtggttggaattcaaggcgtgctgttcaggttctggatacaatatttcccaatgtatcgatcatttgtgttacatgtctgtg |
5034011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 5039859 - 5039670
Alignment:
| Q |
1 |
agtgtgtcttgaaataatagtgatttgttcaaatttgtctatagcatttttatggccaatcagtttaacttgtcacacattaactatacaaaggcagata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||| |
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| T |
5039859 |
agtgtgtcttgaaataatagtgatttgttcaaatttctatatagcatttttatggccaatgagtttaacttgtcacacattaactttacataggcagata |
5039760 |
T |
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| Q |
101 |
taattttgagaggatactgtggttggaattcaaggcgtgctgttcaggttctggatacaatatttcccaatgtatcgatcatttgtgtta |
190 |
Q |
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| T |
5039759 |
taattttgagaggatactgtggttggaattcaaggcgtgctgttcaggttctggatacaatatttcccaaggtattgatcatttgtgtta |
5039670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 87 - 175
Target Start/End: Complemental strand, 25096449 - 25096361
Alignment:
| Q |
87 |
tacaaaggcagatataattttgagaggatactgtggttggaattcaaggcgtgctgttcaggttctggatacaatatttcccaatgtat |
175 |
Q |
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|||| |||| |||||| || || ||||||||| |||||||||| ||||||| ||||| ||||||||||||||||| |||||||| |||| |
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| T |
25096449 |
tacataggcggatatagttctgcgaggatactctggttggaatacaaggcgcgctgtgcaggttctggatacaatttttcccaaggtat |
25096361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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